EsuBft1433_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1433_5a-0001
Unique NameEsuBft1433_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_647contigScaffold_647:385778..387001 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LSX2
ProteomeIdEsuBft1433_5
Protein domainsIPR018247
Protein domainsIPR011992
Protein domainsPF12763
Protein domainsIPR002048
Protein domainsSSF47473
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsIPR000261
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsPTHR11216
Protein domainsSIGNAL_PEPTIDE_N_REGION
Ownerapollo_admin@sb-roscoff.fr
Noteepidermal growth factor receptor substrate 15 os:homo sapiens gn:eps15 pe:1 sv:2 [Automatic annotation]
Nb exon2
Max annot lvl2759|Eukaryota
Length686
Hectar predicted targeting categoryother localisation
Evalue3e-129
EggNOG OGsKOG0998@1|root,KOG0998@2759|Eukaryota
Ec32 ortholog descriptionPhox homologous domain
Ec32 orthologEc-26_001740.1
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K12472
KEGG Pathwayko04144,map04144
Descriptionendocytosis
COG categoryS
BRITEko00000,ko00001,ko04131
Cross References
External references for this mRNA
DatabaseAccession
GO0030139
GO2001137
GO0030866
GO0019904
GO0030132
GO1901741
GO0055038
GO0072661
GO0030136
GO0048471
GO0070062
GO0006897
GO0003676
GO0005515
GO0005901
GO0051260
GO0016050
GO0007596
GO0005509
GO0086036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1433_5aEsuBft1433_5aEctocarpus subulatus male Bft15bgeneScaffold_647 385778..387001 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1433_5a-0001-exonagat-exon-93889Ectocarpus subulatus male Bft15bexonScaffold_647 385778..385932 -
EsuBft1433_5a-0001-exonEsuBft1433_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_647 386471..387001 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1433_5a-0001-exonagat-three_prime_utr-3835Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_647 385778..385800 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1433_5a-0001-cdsEsuBft1433_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_647 385801..385932 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1433_5a-0001-exonagat-five_prime_utr-2536Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_647 386978..387001 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1433_5a-0001EsuBft1433_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_647 385801..386977 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1433_5a-0001 ID=EsuBft1433_5a-0001|Name=EsuBft1433_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=686bp|location=Sequence derived from alignment at Scaffold_647:385778..387001- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGACTACCCCCCACCTCCAGACAAATGCTGCAGGCCTGGCTGCAGTCCCT
CTGCACGGCGGCCTCCACCAACACTCCCGCCCTCCGCGTGCCCCTGTACG
ACTTCCTCGAGACGGCCTCGTACTACCCGCCCGAAGCGCCTGTCACGTCG
TCCGACCCCACCACCGCCTCCGCCCAGCACACCGCCGTAGCCACTCCCGC
CGCCACCACCGCCACCACCGGCGTACCGGTCGCCGCCGCCTACGCCGAGG
CCTTGCCCCCCGCCGCGGGTACCAAGGGCGTAGGAGTTTCGTCCGCCGGC
CCCCCGCCGCCGAAGCCGGACTCTGCGGAAGACGGATGGGCGGTACCCCC
GGAGTCACGAGACGCTTCCGACCTTAAGATGGCCATGGCCGGCCCGAGCG
CGGCGGGAAAGCTTACCGGAGAGCAGGCGGCGGTGGCCTTGAGGACGGGG
ACCGGGGCCGGGCAGGAGGACTTGAGGGCCGTGTGGGCGCTGTCGGACAT
CGACCAGGACGGGATGTTGGACCGCGACGAGTTTGCCGTTGCGTGGTACC
TGGCCCACCAAGCCGCGGCGGGCAACAAGCCGCCTGCTTCGCTTCCAGCC
GACATCGTGCCGCCTTCCAAGCGCCAAGCGGCACAGCACAGCTTAGCGAA
CCCGTTCGGTTAGGCGGGGGGGGGGGAAAGAGATCA
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protein sequence of EsuBft1433_5a-0001

>EsuBft1433_5 ID=EsuBft1433_5|Name=EsuBft1433_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=212bp
MLQAWLQSLCTAASTNTPALRVPLYDFLETASYYPPEAPVTSSDPTTASA
QHTAVATPAATTATTGVPVAAAYAEALPPAAGTKGVGVSSAGPPPPKPDS
AEDGWAVPPESRDASDLKMAMAGPSAAGKLTGEQAAVALRTGTGAGQEDL
RAVWALSDIDQDGMLDRDEFAVAWYLAHQAAAGNKPPASLPADIVPPSKR
QAAQHSLANPFG
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mRNA from alignment at Scaffold_647:385778..387001-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1433_5a-0001 ID=EsuBft1433_5a-0001|Name=EsuBft1433_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1224bp|location=Sequence derived from alignment at Scaffold_647:385778..387001- (Ectocarpus subulatus male Bft15b)
TGACTACCCCCCACCTCCAGACAAATGCTGCAGGCCTGGCTGCAGTCCCT
CTGCACGGCGGCCTCCACCAACACTCCCGCCCTCCGCGTGCCCCTGTACG
ACTTCCTCGAGACGGCCTCGTACTACCCGCCCGAAGCGCCTGTCACGTCG
TCCGACCCCACCACCGCCTCCGCCCAGCACACCGCCGTAGCCACTCCCGC
CGCCACCACCGCCACCACCGGCGTACCGGTCGCCGCCGCCTACGCCGAGG
CCTTGCCCCCCGCCGCGGGTACCAAGGGCGTAGGAGTTTCGTCCGCCGGC
CCCCCGCCGCCGAAGCCGGACTCTGCGGAAGACGGATGGGCGGTACCCCC
GGAGTCACGAGACGCTTCCGACCTTAAGATGGCCATGGCCGGCCCGAGCG
CGGCGGGAAAGCTTACCGGAGAGCAGGCGGCGGTGGCCTTGAGGACGGGG
ACCGGGGCCGGGCAGGAGGACTTGAGGGCCGTGTGGGCGCTGTCGGACAT
CGACCAGGACGGGATGTTGGACCGCGACGAGGTGCGACGAAAAGCGTGGT
TTTTGCTGCTGGTGGAGCCTTATGTGTCTCGAAGGGTTGGGGGAGATTTT
GGGAGGCAACAACGGCTTAGAGGACAGTTTGTTGGAGTTTCTTTCTCAAC
AAACTCTTGTGGTTTTTTCGTTTTGCTTTCCCGCTTTCGAGTGCTACCGA
AGCGACGAATACGTCTCGATTTCAAGGGTTTTGTTTCTAGCCGAGTGATA
AATGCAATGCCTCCTACGAATCCGAACTACTGTACCGAGGATTCAACGAG
GTTCTGCGAAACAGTAATCACCCTTCCGGCCCCGGTTCCACATGGACACG
ATGCTGCAACAAATTTTGAAATTTCCCTCTCATGTTGCTCCCCGTTTGTC
TCTGTTCCTCCATCTTGTTTGTATCAACACAAAGTCTGTCTTCACCTGCT
TAACGCTCTCCTTTTTCGCCCCCCGCCCGCCCATCCGTTTTTCATTTTTT
TCTCTATCGCACGTCCGACCTTGGTTTCATGTCGCTTGGGCCACGCACAT
GTGGATTCTGCTGGAACAGTTTGCCGTTGCGTGGTACCTGGCCCACCAAG
CCGCGGCGGGCAACAAGCCGCCTGCTTCGCTTCCAGCCGACATCGTGCCG
CCTTCCAAGCGCCAAGCGGCACAGCACAGCTTAGCGAACCCGTTCGGTTA
GGCGGGGGGGGGGGAAAGAGATCA
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Coding sequence (CDS) from alignment at Scaffold_647:385778..387001-

>EsuBft1433_5a-0001 ID=EsuBft1433_5a-0001|Name=EsuBft1433_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=639bp|location=Sequence derived from alignment at Scaffold_647:385778..387001- (Ectocarpus subulatus male Bft15b)
ATGCTGCAGGCCTGGCTGCAGTCCCTCTGCACGGCGGCCTCCACCAACAC
TCCCGCCCTCCGCGTGCCCCTGTACGACTTCCTCGAGACGGCCTCGTACT
ACCCGCCCGAAGCGCCTGTCACGTCGTCCGACCCCACCACCGCCTCCGCC
CAGCACACCGCCGTAGCCACTCCCGCCGCCACCACCGCCACCACCGGCGT
ACCGGTCGCCGCCGCCTACGCCGAGGCCTTGCCCCCCGCCGCGGGTACCA
AGGGCGTAGGAGTTTCGTCCGCCGGCCCCCCGCCGCCGAAGCCGGACTCT
GCGGAAGACGGATGGGCGGTACCCCCGGAGTCACGAGACGCTTCCGACCT
TAAGATGGCCATGGCCGGCCCGAGCGCGGCGGGAAAGCTTACCGGAGAGC
AGGCGGCGGTGGCCTTGAGGACGGGGACCGGGGCCGGGCAGGAGGACTTG
AGGGCCGTGTGGGCGCTGTCGGACATCGACCAGGACGGGATGTTGGACCG
CGACGAGTTTGCCGTTGCGTGGTACCTGGCCCACCAAGCCGCGGCGGGCA
ACAAGCCGCCTGCTTCGCTTCCAGCCGACATCGTGCCGCCTTCCAAGCGC
CAAGCGGCACAGCACAGCTTAGCGAACCCGTTCGGTTAG
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