EsuBft1433_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1433_3a-0001
Unique Name	EsuBft1433_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_647	contig	Scaffold_647:364618..368835 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D8LSW9
ProteomeId	EsuBft1433_3
Protein domains	PS51257
Protein domains	IPR018171
Protein domains	PTHR17224
Protein domains	SignalP-TM
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	SIGNAL_PEPTIDE
Protein domains	SignalP-noTM
Protein domains	IPR001328
Protein domains	NON_CYTOPLASMIC_DOMAIN
Owner	apollo_admin@sb-roscoff.fr
Note	peptidyl-trna hydrolase os:rhodopirellula baltica (strain sh1) gn:pth pe:3 sv:1 [Automatic annotation]
Nb exon	4
Max annot lvl	2759\|Eukaryota
Length	1556
Hectar predicted targeting category	chloroplast
Evalue	1.78e-115
EggNOG OGs	COG0193@1\|root,KOG2255@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
KEGG ko	ko:K01056
EC	3.1.1.29
Description	aminoacyl-tRNA hydrolase activity
COG category	J
BRITE	ko00000,ko01000,ko03012

Cross References

External references for this mRNA


Database	Accession
GO	0004045

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1433_3a	EsuBft1433_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_647 364618..368835 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1433_3a-0001	EsuBft1433_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_647 365030..368786 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1433_3a-0001-exon	agat-exon-93882	Ectocarpus subulatus male Bft15b	exon	Scaffold_647 364618..365196 -
EsuBft1433_3a-0001-exon	EsuBft1433_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_647 365732..365912 -
EsuBft1433_3a-0001-exon	agat-exon-93881	Ectocarpus subulatus male Bft15b	exon	Scaffold_647 367303..367395 -
EsuBft1433_3a-0001-exon	agat-exon-93883	Ectocarpus subulatus male Bft15b	exon	Scaffold_647 368133..368835 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1433_3a-0001-exon	agat-three_prime_utr-3833	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_647 364618..365029 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1433_3a-0001-cds	EsuBft1433_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_647 365030..365196 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1433_3a-0001-exon	agat-five_prime_utr-2535	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_647 368787..368835 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_647:364618..368835-
coding sequence from alignment at Scaffold_647:364618..368835-

spliced messenger RNA

>EsuBft1433_3a-0001 ID=EsuBft1433_3a-0001|Name=EsuBft1433_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1556bp|location=Sequence derived from alignment at Scaffold_647:364618..368835- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AAGCAGCAGAAGCAGCAGCAGCAGTCGGGAAAGCATCAGTAGAGTGATCA
TGCTGATGCATACGCGGCGGTTCTGGCGTAACTCGCTCTTGTCGTTGATG
TCGTCGGCCTGTCTTATGCGCCCCCCGCCGTCTGCGCAAGCGTTCCTGCT
GACCAGTATAGCGTCGACGGCACGCACGTCAACAACGGCAAGACTGGCGA
ACGCCATCATCATGGGAAAGCAGCAGGTCGCAACCACCACCATTTCATCA
CGACGAGTATGCAGCAAAGCCCCGCGCTCTTCCGGCCGAAGCAGCAACCC
GCTGCTCTCCTCGATGAGACCCCGAGTCCCCCACCTCTTGGATTCCGCCG
CGTCTTCCAGCCTGGCCGCTTCACCTGCCACTGGGGACACAGCCGCTCCC
GCGCCCAAGGCTGACCAGAACCCACCGCAGGCGGGAGCGACCGGTGAGGG
CCGAGGGTTCGGAAGCAAACCTGCCGGACAGCAGTCGCAGCAGCAGCAGC
AGCAGGAGCAGCAGCACCGGCGGCCAAAACAGCAGCGACGGCCGCAGCCG
AAGGCGCCCCCGCGGGGGGACAACCTACTGGTGGTGGGTCTCGGTAACCC
GGGCGACAAGTACAAGATGACCAGGCACAATGCAGGGTTCCTGGTGGCCG
AGGAGCTGGCGAGGCGGCATGGGGGCACCCTCAAGATCAAGACCGCGTTT
CAGGGCGAGTATTGCTCGGTGAGAGTGAAACATAAGTCCGTGGGGATCCT
GCGACCTATCACGTACATGAACAACAGCGGGATATCTGCCCGAAAGGTGA
TGGACTTCTTCAAGCTCCCCATGAACGCGGCCATAGTCCTGGTGGACGAG
GTAGCGCTAGACTTTGGCCAGCTCCGGCTCAAGGGGAAGGGGGGGGCGGG
GGGGCACAACGGGCTCAAGAGCTTGCAGGCGCACCTCAAGACTCCGGAGT
ATACCCGACTTAGGATCGGCGTAGGAGCGTCAAAGTTTTCGGAGGCCTTG
TCGGACCACGTTCTTGGAGAGTTCACGAGAACAGAAAAGAAGGAGCTCGA
CAACGTTATCGCCGACGCGTGCGACGCGGTGGAGCACTGGATAGAGGAGG
AAGACATGGCTAAGGTCATGACGCGGTTCAACTCAGCGCGATGACATTCG
GCGGCGGCGGCGGCGGCAGCGGCAGCGCTTTCGCGTGGCCGAGGAGATAA
CGCCAACACCCCAAAGCAATGATCCAGTGGTTACGGAAAGTAATATTTGC
TTTACGCGTTATGCCATCGCCTTATAGACTACGTTGAGGAGCGGAGAGGA
TTCCCCACAACCTTCAAAACCACGACAGGTGTATGTCACCATCGAGGCGT
TCTGCGTTAGAGGACCGCCGTATCTTGGCATGGTGCAAATGGACAAGCCC
CTCAGCTCCTTGCTAGAATAGTAACTTTCGACCAAGGGTCGCGTTGAAGA
CACGGCCATGGCGTTGGTGTGTGCCCCTTTTTTGCTAGTCGTGAGATTTG
AAAACAGAATAAACACCGGGATGACAGAGAGAAAAGGTCCCCGCAGTTTT
CTGATT

protein sequence of EsuBft1433_3a-0001

>EsuBft1433_3 ID=EsuBft1433_3|Name=EsuBft1433_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=364bp
MLMHTRRFWRNSLLSLMSSACLMRPPPSAQAFLLTSIASTARTSTTARLA
NAIIMGKQQVATTTISSRRVCSKAPRSSGRSSNPLLSSMRPRVPHLLDSA
ASSSLAASPATGDTAAPAPKADQNPPQAGATGEGRGFGSKPAGQQSQQQQ
QQEQQHRRPKQQRRPQPKAPPRGDNLLVVGLGNPGDKYKMTRHNAGFLVA
EELARRHGGTLKIKTAFQGEYCSVRVKHKSVGILRPITYMNNSGISARKV
MDFFKLPMNAAIVLVDEVALDFGQLRLKGKGGAGGHNGLKSLQAHLKTPE
YTRLRIGVGASKFSEALSDHVLGEFTRTEKKELDNVIADACDAVEHWIEE
EDMAKVMTRFNSAR

mRNA from alignment at Scaffold_647:364618..368835-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1433_3a-0001 ID=EsuBft1433_3a-0001|Name=EsuBft1433_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4218bp|location=Sequence derived from alignment at Scaffold_647:364618..368835- (Ectocarpus subulatus male Bft15b)
AAGCAGCAGAAGCAGCAGCAGCAGTCGGGAAAGCATCAGTAGAGTGATCA
TGCTGATGCATACGCGGCGGTTCTGGCGTAACTCGCTCTTGTCGTTGATG
TCGTCGGCCTGTCTTATGCGCCCCCCGCCGTCTGCGCAAGCGTTCCTGCT
GACCAGTATAGCGTCGACGGCACGCACGTCAACAACGGCAAGACTGGCGA
ACGCCATCATCATGGGAAAGCAGCAGGTCGCAACCACCACCATTTCATCA
CGACGAGTATGCAGCAAAGCCCCGCGCTCTTCCGGCCGAAGCAGCAACCC
GCTGCTCTCCTCGATGAGACCCCGAGTCCCCCACCTCTTGGATTCCGCCG
CGTCTTCCAGCCTGGCCGCTTCACCTGCCACTGGGGACACAGCCGCTCCC
GCGCCCAAGGCTGACCAGAACCCACCGCAGGCGGGAGCGACCGGTGAGGG
CCGAGGGTTCGGAAGCAAACCTGCCGGACAGCAGTCGCAGCAGCAGCAGC
AGCAGGAGCAGCAGCACCGGCGGCCAAAACAGCAGCGACGGCCGCAGCCG
AAGGCGCCCCCGCGGGGGGACAACCTACTGGTGGTGGGTCTCGGTAACCC
GGGCGACAAGTACAAGATGACCAGGCACAATGCAGGGTTCCTGGTGGCCG
AGGAGCTGGCGAGGCGGCATGGGGGCACCCTCAAGATCAAGACCGCGTTT
CAGGTGAATGGTCTCGCGTTGTTTCCCACATGTCCTTTGCATTTCCGGCG
GAGACGAGACTAACATGCGCACTGCTGGGTGTGGACAGGCGACCCCATCC
CACACCCATTCGGGTGACTGCCGTCACTTTCCCTGCTGCTGTAGAGCGAT
CCCGATGGAGTTTGCCGAAACACAGTGCTGTTTCACATGGTAATCAGTGG
TACAGGTTTTTGCTGAGAGGGCCACAAGGAAGCCAACAAGCAAGTGCAGT
TTTGCAGGCCCTCTCGTTGGGCTGGATGGCCCATCGTCTGTACCGCTTTG
CCGCGCCACGAACGACAAGGACGAACGTATCGTGTGTATGGTACCTACTG
ATGGATTCGGTTTGCAATCGAGCCGCAGAATGCTTGGGCCGGGCACCCGC
ATTGCTAGACACCCTGCTTTACAAAGGCGCACTTTAATACTGTAGTGCTC
CAAGACGAAACCACAATCGAATACTGCCATTTTGCTGGACGACCCTGGAT
ATGGAGTTTCCTTCCTTGGCTCTTTCTCGGACGTCGTCCTCTTAGACCAG
CAGAACCGCATTGGTTGTACTGCCAGATTGACCGGAGCTCCAGCGGTACT
CTCTGGCATCATGTTGACGCCCATCCCGCTGCTTTCATCTTGCCCGAGGA
CTGTCGTCCAAACCACCCCTCATCTTTGATGCGACCCGCCCCATCCGTTT
GGCGCCGCGCTCGACTGCATGTTTTCTCGGACGCGTTCAGGGCGAGTATT
GCTCGGTGAGAGTGAAACATAAGTCCGTGGGGATCCTGCGACCTATCACG
TACATGAACAACAGCGGGATATCTGCCCGAAAGGTGAAAGAGGACGGGAG
CGCAAGAAGGCGCACGATGCTATGTATCATGGTTTACGACGCTTTTGTTG
GAAGTTGTTTTGCCGTCCTACCTCAACGAGCACCGGGTACTCCTGAACCG
TGTTTGGATTATTTAACGTGTTGCGTTGTGGGAAGAACACGAGGGCCTCT
TCATTGTTCAGACAGACAGTCACTCTTCGTTTCTCCGCAGAAACAGGTCA
ATTGTTATCCGAACGTGCCTTGCACCAACCTCGTCGCGCACACTTTTTCG
AAGAAGACATATGTACGACTTTTCTGCATTTGGCGTGTACACTTTCGTGG
TGCCAGCGTGGCATGGTTTTCGTTGCCGTCGCACCTTGCACAATATTCCT
TACGGGTGCTTATGAGACGAGTCGCCTTTACGCCCTCGTTCTGCCCCCCC
CCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCC
CCCCCCCCACCGAAAACGGTAGCTGTACTGGGGCATAGGAAGTGACTTGA
AAAAGCTGTTGGCGATGTCGATAGGACAGATGGGCTACATACGGAAATCA
TTTTTGAGCCACCGTTGGCAAGTAGGAAGGAACGATTGGCCATCGGTGAT
CGGTCCTGTGTGAACAGTGCTCCTCTTTCTCTGCAGGACGCGTGATCAAT
GTTCTAAACGCGAAGGCACGCAAAAGATAAGAGTACGCCCCACCCCCCCT
CCCTCCTCGTGGCCGTCGCCCAGGTGATGGACTTCTTCAAGCTCCCCATG
AACGCGGCCATAGTCCTGGTGGACGAGGTAGCGCTAGACTTTGGCCAGCT
CCGGCTCAAGGGGAAGGGGGGGGCGGGGGGGCACAACGGGCTCAAGAGCT
TGCAGGCGCACCTCAAGACTCCGGAGTATACCCGACTTAGGATCGGCGTA
GGAGGTGTGTGGTTTACCTATGTCTGCCATGTGTATACCGCCGGTGACAC
AAGACACCACACCCCTTGAACCGATTTCCAAAGCTCGACTGCTCCACGAC
GAAGAGGATGAAAAACTCAATTGATGCGTTTTCAGAAAGATGTCGACGTG
ATGGTTCCAACGACGATATGTTCGGCACGACCTCTCTTTTCTACTGTGGA
GTGATCGAGCTTTGAAATCGGACCAGGCCAAGGTGTGTGTGGTATCTTGA
GTCACCCGCGGTATCTACGAGGAGCTGAGATCGCGTTTGTGTCAAGGTGC
TAGTGGGTGGCCCGTGAAAACGCGCGCACGGGTATCTTTCAGGTGTCTTG
TTACCGCATTGTGACTCAACCCCCTCGCTCGTTCGGCCCGTGCTCGAAAG
AGGGATGGTTGACTACTGCAGTAAGTCACGAATGCTGCTGGGGTAAGGAG
CGATCCTGTGGGTGTCTGCTTTCGCTTCGATTATTACACACGGCTCCGTC
CCACTTTTGCGCGGCTCAACCTTAACTTTTCGCTGACAGCGTCAAAGTTT
TCGGAGGCCTTGTCGGACCACGTTCTTGGAGAGTTCACGAGAACAGAAAA
GAAGGAGCTCGACAACGTTATCGCCGACGCGTGCGACGCGGTGGAGCACT
GGATAGAGGAGGAAGACATGGCTAAGGTCATGACGCGGTTCAACTCAGCG
CGATGACATTCGGCGGCGGCGGCGGCGGCAGCGGCAGCGCTTTCGCGTGG
CCGAGGAGATAACGCCAACACCCCAAAGCAATGATCCAGTGGTTACGGAA
AGTAATATTTGCTTTACGCGTTATGCCATCGCCTTATAGACTACGTTGAG
GAGCGGAGAGGATTCCCCACAACCTTCAAAACCACGACAGGTGTATGTCA
CCATCGAGGCGTTCTGCGTTAGAGGACCGCCGTATCTTGGCATGGTGCAA
ATGGACAAGCCCCTCAGCTCCTTGCTAGAATAGTAACTTTCGACCAAGGG
TCGCGTTGAAGACACGGCCATGGCGTTGGTGTGTGCCCCTTTTTTGCTAG
TCGTGAGATTTGAAAACAGAATAAACACCGGGATGACAGAGAGAAAAGGT
CCCCGCAGTTTTCTGATT

Coding sequence (CDS) from alignment at Scaffold_647:364618..368835-

>EsuBft1433_3a-0001 ID=EsuBft1433_3a-0001|Name=EsuBft1433_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1095bp|location=Sequence derived from alignment at Scaffold_647:364618..368835- (Ectocarpus subulatus male Bft15b)
ATGCTGATGCATACGCGGCGGTTCTGGCGTAACTCGCTCTTGTCGTTGAT
GTCGTCGGCCTGTCTTATGCGCCCCCCGCCGTCTGCGCAAGCGTTCCTGC
TGACCAGTATAGCGTCGACGGCACGCACGTCAACAACGGCAAGACTGGCG
AACGCCATCATCATGGGAAAGCAGCAGGTCGCAACCACCACCATTTCATC
ACGACGAGTATGCAGCAAAGCCCCGCGCTCTTCCGGCCGAAGCAGCAACC
CGCTGCTCTCCTCGATGAGACCCCGAGTCCCCCACCTCTTGGATTCCGCC
GCGTCTTCCAGCCTGGCCGCTTCACCTGCCACTGGGGACACAGCCGCTCC
CGCGCCCAAGGCTGACCAGAACCCACCGCAGGCGGGAGCGACCGGTGAGG
GCCGAGGGTTCGGAAGCAAACCTGCCGGACAGCAGTCGCAGCAGCAGCAG
CAGCAGGAGCAGCAGCACCGGCGGCCAAAACAGCAGCGACGGCCGCAGCC
GAAGGCGCCCCCGCGGGGGGACAACCTACTGGTGGTGGGTCTCGGTAACC
CGGGCGACAAGTACAAGATGACCAGGCACAATGCAGGGTTCCTGGTGGCC
GAGGAGCTGGCGAGGCGGCATGGGGGCACCCTCAAGATCAAGACCGCGTT
TCAGGGCGAGTATTGCTCGGTGAGAGTGAAACATAAGTCCGTGGGGATCC
TGCGACCTATCACGTACATGAACAACAGCGGGATATCTGCCCGAAAGGTG
ATGGACTTCTTCAAGCTCCCCATGAACGCGGCCATAGTCCTGGTGGACGA
GGTAGCGCTAGACTTTGGCCAGCTCCGGCTCAAGGGGAAGGGGGGGGCGG
GGGGGCACAACGGGCTCAAGAGCTTGCAGGCGCACCTCAAGACTCCGGAG
TATACCCGACTTAGGATCGGCGTAGGAGCGTCAAAGTTTTCGGAGGCCTT
GTCGGACCACGTTCTTGGAGAGTTCACGAGAACAGAAAAGAAGGAGCTCG
ACAACGTTATCGCCGACGCGTGCGACGCGGTGGAGCACTGGATAGAGGAG
GAAGACATGGCTAAGGTCATGACGCGGTTCAACTCAGCGCGATGA