EsuBft1424_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1424_5a-0001
Unique NameEsuBft1424_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_499contigScaffold_499:165910..166660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1424_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length53
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1424_5aEsuBft1424_5aEctocarpus subulatus male Bft15bgeneScaffold_499 165910..166660 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1424_5a-0001-exonagat-exon-106760Ectocarpus subulatus male Bft15bexonScaffold_499 165910..166412 -
EsuBft1424_5a-0001-exonEsuBft1424_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_499 166631..166660 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1424_5a-0001-exonagat-three_prime_utr-3775Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_499 165910..166370 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1424_5a-0001-cdsEsuBft1424_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_499 166371..166412 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1424_5a-0001EsuBft1424_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_499 166371..166660 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1424_5a-0001 ID=EsuBft1424_5a-0001|Name=EsuBft1424_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=533bp|location=Sequence derived from alignment at Scaffold_499:165910..166660- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTCCTCTATTAAGGACAGTACTGAGACACAGAGCCAGGCAAACAT
GCGGGAATTTATCGCGACGTAGTGAGGGCGGGGGTTACAGCTACAGCGGC
TGTTTGATTTCTTGCATGTCCCGTTCTTGCGGTCGTGTTTTTTTTTCTTG
TTCAGGCTACATCGAAGGAGGGTGAGGAGGAGACAGATTTAGCTTCCTCC
TTCACCAATAGGTTGTGCCAGCAGGAGCTTCGCAAAAGTGTTACCGCCAA
AAACCCATGGGCTTCATGATCAGTGGTTTGCTTTCGCTGTCGAGGAGTGA
TGTTGAGGTTGCGCGAAATGGTTTGATCCCTTTAAGGCCAGTGCCACGGC
ATTCTTGCCAACATAATATTAGGCATCTATGAGGTGCATCCTTTGCGATA
TTCATGTGAAGGGTATAAGTCAGGTTGTGCATATGTGCAGTACGTGCGCT
GAGGTGGGTACAGCAACAAGGTGCAGCATGTGTGTCCCGTCCAGTTGACT
TCTTAAGCAAAACATGTGTGGTCGACAGGGCAG
back to top

protein sequence of EsuBft1424_5a-0001

>EsuBft1424_5 ID=EsuBft1424_5|Name=EsuBft1424_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=23bp
MVSSIKDSTETQSQANMREFIAT
back to top

mRNA from alignment at Scaffold_499:165910..166660-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1424_5a-0001 ID=EsuBft1424_5a-0001|Name=EsuBft1424_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=751bp|location=Sequence derived from alignment at Scaffold_499:165910..166660- (Ectocarpus subulatus male Bft15b)
ATGGTGTCCTCTATTAAGGACAGTACTGAGGTGAAGTTATCTAAAAACGG
CGGGGAAGTTTGCTTTCTTTCTGTATACAGTAGAGGACCCCGTTTAGTGC
CGGTTGAATAGTGCCGGCCAAATCTCGGCGCACAGAACCCGCCCTGAATG
GTGCCAGACCGGCACTATTCAGGGCTTCCCACTATAGTGCCGGTTCAAGC
ACGCACGCACACACAACACACAAGAGACACACACAACAAAGAAGACAGAC
ACAGAGCCAGGCAAACATGCGGGAATTTATCGCGACGTAGTGAGGGCGGG
GGTTACAGCTACAGCGGCTGTTTGATTTCTTGCATGTCCCGTTCTTGCGG
TCGTGTTTTTTTTTCTTGTTCAGGCTACATCGAAGGAGGGTGAGGAGGAG
ACAGATTTAGCTTCCTCCTTCACCAATAGGTTGTGCCAGCAGGAGCTTCG
CAAAAGTGTTACCGCCAAAAACCCATGGGCTTCATGATCAGTGGTTTGCT
TTCGCTGTCGAGGAGTGATGTTGAGGTTGCGCGAAATGGTTTGATCCCTT
TAAGGCCAGTGCCACGGCATTCTTGCCAACATAATATTAGGCATCTATGA
GGTGCATCCTTTGCGATATTCATGTGAAGGGTATAAGTCAGGTTGTGCAT
ATGTGCAGTACGTGCGCTGAGGTGGGTACAGCAACAAGGTGCAGCATGTG
TGTCCCGTCCAGTTGACTTCTTAAGCAAAACATGTGTGGTCGACAGGGCA
G
back to top

Coding sequence (CDS) from alignment at Scaffold_499:165910..166660-

>EsuBft1424_5a-0001 ID=EsuBft1424_5a-0001|Name=EsuBft1424_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=72bp|location=Sequence derived from alignment at Scaffold_499:165910..166660- (Ectocarpus subulatus male Bft15b)
ATGGTGTCCTCTATTAAGGACAGTACTGAGACACAGAGCCAGGCAAACAT
GCGGGAATTTATCGCGACGTAG
back to top