EsuBft1424_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1424_2a-0001
Unique Name	EsuBft1424_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_499	contig	Scaffold_499:206406..208716 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1424_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	55
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1424_2a	EsuBft1424_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_499 206406..208716 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1424_2a-0001-exon	EsuBft1424_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_499 206406..206841 +
EsuBft1424_2a-0001-exon	agat-exon-106750	Ectocarpus subulatus male Bft15b	exon	Scaffold_499 208599..208716 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1424_2a-0001-exon	agat-five_prime_utr-2492	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_499 206406..206495 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1424_2a-0001-cds	EsuBft1424_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_499 206496..206841 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1424_2a-0001-exon	agat-three_prime_utr-3774	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_499 208703..208716 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1424_2a-0001	EsuBft1424_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_499 206496..208702 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_499:206406..208716+
coding sequence from alignment at Scaffold_499:206406..208716+

spliced messenger RNA

>EsuBft1424_2a-0001 ID=EsuBft1424_2a-0001|Name=EsuBft1424_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=554bp|location=Sequence derived from alignment at Scaffold_499:206406..208716+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CACAGCACACACCGCGCACACCACAAAACACAACGCTTTTCTGCACCAGC
GCCACTCTGCACACAGCAGTCGCATCCCGTACAGCAGACCATGAATGCTA
TGAAACTAGATGGCGTACAGTCTCTCCCGCTGGAGTTCAACTCGTATGCG
GAGACAGTGATTTCGATGCTGCGGGACAAGAGGAGCTCCGGCCTGACGGA
CACCAAGTTGCTGAAGCACCTCCAGAACGTGTGCATCGTGTACGCGTGTT
TGGCGGTCAAGCGCAACGCCGGGATTGTCTCCACACAGGCCAAGCACGCG
GCAGTGGCGAAGGGGTACAAGGACATCGCTGTCCCTGGCTTCTTCAAGTG
GCTCAAGGAAAACTTGGAGGCGGATCAATACTTCTCGCAGCCGTGGCTCA
CGTTCGAGGTCATGGGAAGGACGTCGATGAGCGGAGGACAACCTGGGGAC
CAACTACCGTCGGGCAGCCAAGACGAAGACGCCATCGAGTACCTTCTGCA
CGGAGTCTACCACATGGAATCCGGAACGGGGAACGCATAAGACCCGATCG
AGTT

protein sequence of EsuBft1424_2a-0001

>EsuBft1424_2 ID=EsuBft1424_2|Name=EsuBft1424_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=149bp
MNAMKLDGVQSLPLEFNSYAETVISMLRDKRSSGLTDTKLLKHLQNVCIV
YACLAVKRNAGIVSTQAKHAAVAKGYKDIAVPGFFKWLKENLEADQYFSQ
PWLTFEVMGRTSMSGGQPGDQLPSGSQDEDAIEYLLHGVYHMESGTGNA

mRNA from alignment at Scaffold_499:206406..208716+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1424_2a-0001 ID=EsuBft1424_2a-0001|Name=EsuBft1424_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2311bp|location=Sequence derived from alignment at Scaffold_499:206406..208716+ (Ectocarpus subulatus male Bft15b)
CACAGCACACACCGCGCACACCACAAAACACAACGCTTTTCTGCACCAGC
GCCACTCTGCACACAGCAGTCGCATCCCGTACAGCAGACCATGAATGCTA
TGAAACTAGATGGCGTACAGTCTCTCCCGCTGGAGTTCAACTCGTATGCG
GAGACAGTGATTTCGATGCTGCGGGACAAGAGGAGCTCCGGCCTGACGGA
CACCAAGTTGCTGAAGCACCTCCAGAACGTGTGCATCGTGTACGCGTGTT
TGGCGGTCAAGCGCAACGCCGGGATTGTCTCCACACAGGCCAAGCACGCG
GCAGTGGCGAAGGGGTACAAGGACATCGCTGTCCCTGGCTTCTTCAAGTG
GCTCAAGGAAAACTTGGAGGCGGATCAATACTTCTCGCAGCCGTGGCTCA
CGTTCGAGGTCATGGGAAGGACGTCGATGAGCGGAGGTGAGACACAACGA
ACGCGGGAGAGAGAGAGGCAGGTTTCGAGTGCGTAAGACAACCGTCATGA
TGGAGACAGGCTGGGTTCGGTGCCTTCATGGTGTGCTGTTCAACATGACA
TGCTCAACGTAGGGTGTAGGGTACCGGGTCCGGCCAAAGTTGCATTTTTG
CTGCACTCACCAGGCCATGACGGGCTGCTGCCGCAAGAAGAACCAAGATG
ATACTGCTGCTGTATGCATAGGATACCTTGTCAAGCCACGGCCCATCCTT
TGGGCGGCAATCACAGGATGCAACCCTTTAGTAAGTGCACCAGTCGTAAC
GTAGCTTGTCGAGGCTCAGCTGTATGGCTACCCGAGCGTGGCCATATTCT
TGAGCAGTACATACCGCACTTACTCCTACCGATAGGCACATGGAGAGCAA
TATTCTGTACAGCGACGACGCAACACAATGCACGCCCTCCAGCAGGGTAT
GTTTGCCGCTACTGCTGACCATTAACTACTACTGCTGCTGTTCGACTTTT
GCCTACCCCATGTTGCTGCGACGCAGACGCGGTCCTCTTCACCGACGGCA
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNAGAGTGCGTTACGATCGCTGCCAATCTCACCCGTTCTTCCTACCTCT
CTCTACCTTGTTCCCGTGCACCCCTGGCCCAGTTTCGTCGAAGGACAACC
TGGGGACCAACTACCGTCGGGCAGCCAAGACGAAGACGCCATCGAGTACC
TTCTGCACGGAGTCTACCACATGGAATCCGGAACGGGGAACGCATAAGAC
CCGATCGAGTT

Coding sequence (CDS) from alignment at Scaffold_499:206406..208716+

>EsuBft1424_2a-0001 ID=EsuBft1424_2a-0001|Name=EsuBft1424_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=450bp|location=Sequence derived from alignment at Scaffold_499:206406..208716+ (Ectocarpus subulatus male Bft15b)
ATGAATGCTATGAAACTAGATGGCGTACAGTCTCTCCCGCTGGAGTTCAA
CTCGTATGCGGAGACAGTGATTTCGATGCTGCGGGACAAGAGGAGCTCCG
GCCTGACGGACACCAAGTTGCTGAAGCACCTCCAGAACGTGTGCATCGTG
TACGCGTGTTTGGCGGTCAAGCGCAACGCCGGGATTGTCTCCACACAGGC
CAAGCACGCGGCAGTGGCGAAGGGGTACAAGGACATCGCTGTCCCTGGCT
TCTTCAAGTGGCTCAAGGAAAACTTGGAGGCGGATCAATACTTCTCGCAG
CCGTGGCTCACGTTCGAGGTCATGGGAAGGACGTCGATGAGCGGAGGACA
ACCTGGGGACCAACTACCGTCGGGCAGCCAAGACGAAGACGCCATCGAGT
ACCTTCTGCACGGAGTCTACCACATGGAATCCGGAACGGGGAACGCATAA