EsuBft1418_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1418_9a-0001
Unique NameEsuBft1418_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:1189862..1193769 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G873
ProteomeIdEsuBft1418_9
Protein domainsPTHR19446
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Noterna-directed dna polymerase from mobile element jockey os:drosophila funebris gn:jockey\pol pe: [Automatic annotation]
Nb exon2
Max annot lvl2759|Eukaryota
Length3435
Evalue3.5e-46
EggNOG OGsCOG0553@1|root,COG2940@1|root,COG5076@1|root,KOG1075@1|root,KOG0383@2759|Eukaryota,KOG0384@2759|Eukaryota,KOG1075@2759|Eukaryota,KOG1081@2759|Eukaryota,KOG1474@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG koko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG ReactionR00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathwayko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG ModuleM00089
EC2.1.1.43,2.3.1.15,3.6.4.12
Descriptionacetylation-dependent protein binding
COG categoryBK
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1418_9aEsuBft1418_9aEctocarpus subulatus male Bft15bgeneScaffold_242 1189862..1193769 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1418_9a-0001EsuBft1418_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 1192975..1193769 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1418_9a-0001-exonagat-exon-57482Ectocarpus subulatus male Bft15bexonScaffold_242 1189862..1190555 -
EsuBft1418_9a-0001-exonagat-exon-57481Ectocarpus subulatus male Bft15bexonScaffold_242 1190711..1193300 -
EsuBft1418_9a-0001-exonEsuBft1418_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 1193619..1193769 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1418_9a-0001-exonagat-three_prime_utr-3727Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 1189862..1190555 -
EsuBft1418_9a-0001-exonagat-three_prime_utr-3728Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 1190711..1192974 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1418_9a-0001-cdsEsuBft1418_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 1192975..1193300 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1418_9a-0001 ID=EsuBft1418_9a-0001|Name=EsuBft1418_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3435bp|location=Sequence derived from alignment at Scaffold_242:1189862..1193769- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAATTTGCAGCGAGGTTGGGGGGCCCCTCGGGCGGCCAGGTGCGAGG
TACGGCGGAAGGCACGGGCCCCAGCATGGGGGCCGGAGGACGTGGACATC
AGCAGAAACAGCCGGCGGGAGGAAGATTTCGGGGGCGTGACGCCGCTTCC
GAAGGAATCATCCAAGGTAGAAAGAGGGCGGGAAAGCCGACGTACTGCTT
CTTCCTGGACGTGAAAAAGGCATACGGCACCGTGTGGAGAACTGGGTTGT
GGAAACAAATGTCCAAATACGGGATCAAGGGGAAAATGTGGAGAGTGCTG
AAGAAGATGACAGAGTGTACGAAAAGCGCGGTCATGCTAGACGGAGAACT
GTCTAAATTCTTCGACATTGAGCAGGGGGTCCCACAAGGTTGCACGCTGT
CCCCAACATTGTTCCAGGTGTTCATCAACGATCTGTTGGAAGTCGTAGAG
GCAGTCCGGAAGGGAGTAAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNCCCCCCCAAGTGGGTTGGCGCTGTTGGCAAAGCGCTGTAAAACAC
GCCACCCCAAATATAGCCCCCTTGTTATGCGCTACCAAAGACGCGTGACG
CATGGACAAGTGGAGTGAGGATAGCTGTTTACGAAAACCTCACAGGTTGA
GGAATGTAGGAGATTGCCGGAAACACACACGTGTTGAGTGATTATAGCTG
CATACTGAAACCCCAAGGGTTGAGTGAGGTTTGAGATTGCCAGACACATG
GACGGATCGAGTGGGGATAGCTGCATACTGAAACCCCACGGGCTGAGTGA
CGTTGGAGTGCCCGACACATAGACGCATTGAGTGAGGATAGACACATGCT
GAACCTCACAGGTGATTTGTGGTGGAGACTGCCGGACACATAGACGTGTT
AAGTGAGGATAGCTACATACTGAAATCTCACAGATGCATTGTTTGCCAGA
CACATAAACGCGCTGAGTGGGGATAGCTGCATACTGAAACTTCACAGATG
GATTGGTTTTTGACTTTGCCAGACACATAGACGCGCTGAGTAGGGAAACT
ACATATTAAAACCTCACGAGTTGAAGTGATGTTGGATAGTGCCGGACACA
TAGACGCGCTGAGTAGGGAAACTACATATTAAAACCTCACGAGTTGAAGT
GATGTTGGATAGTGCCGGACACATAGACGCGCTGAGTGAGGATAGACACA
TAAACCTCACAGGTGATTTGTATTGGAGATTGCCGGACACATAGACGTGT
TGAGTGAGGATAGCTGCATACTAAAACCTCACAAGTGGATTGGTTTTTGA
GTTTGCCACACACACAGACGCGCTGAGCGGGGATAGCTACATAACGAAAC
CTCACGAGTTGAGTGATGTTGGATAGTGCCAGACACATTGGCGCTTTGAG
TGAGGATAGCTGCATATTGAGACCTAACGGGTTGAGTGACGTTTGCGACT
GCCGGACTCATAGCCGCATCGAGTAAAGAACGCTTCATACTGAAACCTCA
CAGGTTGATTTGTATTGGAGATTGCCGGACACATAGGCGCGTTGAGTGAG
GATAGCTGTATACTGAAAATCCACAGTAGCAAGAGTGAGGGGACAATTCG
AGAATGTAGTACACATAGACCCGACCCTCAACCCG
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protein sequence of EsuBft1418_9a-0001

>EsuBft1418_9 ID=EsuBft1418_9|Name=EsuBft1418_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=159bp
MQFAARLGGPSGGQVRGTAEGTGPSMGAGGRGHQQKQPAGGRFRGRDAAS
EGIIQGRKRAGKPTYCFFLDVKKAYGTVWRTGLWKQMSKYGIKGKMWRVL
KKMTECTKSAVMLDGELSKFFDIEQGVPQGCTLSPTLFQVFINDLLEVVE
AVRKGVKXX
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mRNA from alignment at Scaffold_242:1189862..1193769-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1418_9a-0001 ID=EsuBft1418_9a-0001|Name=EsuBft1418_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3908bp|location=Sequence derived from alignment at Scaffold_242:1189862..1193769- (Ectocarpus subulatus male Bft15b)
ATGCAATTTGCAGCGAGGTTGGGGGGCCCCTCGGGCGGCCAGGTGCGAGG
TACGGCGGAAGGCACGGGCCCCAGCATGGGGGCCGGAGGACGTGGACATC
AGCAGAAACAGCCGGCGGGAGGAAGATTTCGGGGGCGTGACGCCGCTTCC
GGTAGGTGGGGCAGGGGCCCTTTTCACTCGGGCCGCCTGGCAGTAATCTT
CCCGCCTACCCCGTCACCCAACAGGGCTACGACTACAGCGCTTACCCCCC
CCACTTGTACCGCCCGCAGGGAAACCCGCCGCCGATCCTCGCGGCCGAAC
CTCGCAAACGTGGTGAAACCTGCGGTGAACTCGGACACAACCACTTATTC
TGTCCTTCGCCTGTTGATGTAGGAAGGCCAGCTGGCATGCCGGCCGCCAA
GGCGCCGCCCAGACCCTAGGCCGGTGGCTACAGCCACCGGCCGCCGGCTG
CCGTGACGTCACTCGGTAGAAGGAATCATCCAAGGTAGAAAGAGGGCGGG
AAAGCCGACGTACTGCTTCTTCCTGGACGTGAAAAAGGCATACGGCACCG
TGTGGAGAACTGGGTTGTGGAAACAAATGTCCAAATACGGGATCAAGGGG
AAAATGTGGAGAGTGCTGAAGAAGATGACAGAGTGTACGAAAAGCGCGGT
CATGCTAGACGGAGAACTGTCTAAATTCTTCGACATTGAGCAGGGGGTCC
CACAAGGTTGCACGCTGTCCCCAACATTGTTCCAGGTGTTCATCAACGAT
CTGTTGGAAGTCGTAGAGGCAGTCCGGAAGGGAGTAAAAGNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNCCCCCCCAAGTGGGTTGGCGCTGTTGG
CAAAGCGCTGTAAAACACGCCACCCCAAATATAGCCCCCTTGTTATGCGC
TACCAAAGACGCGTGACGCATGGACAAGTGGAGTGAGGATAGCTGTTTAC
GAAAACCTCACAGGTTGAGGAATGTAGGAGATTGCCGGAAACACACACGT
GTTGAGTGATTATAGCTGCATACTGAAACCCCAAGGGTTGAGTGAGGTTT
GAGATTGCCAGACACATGGACGGATCGAGTGGGGATAGCTGCATACTGAA
ACCCCACGGGCTGAGTGACGTTGGAGTGCCCGACACATAGACGCATTGAG
TGAGGATAGACACATGCTGAACCTCACAGGTGATTTGTGGTGGAGACTGC
CGGACACATAGACGTGTTAAGTGAGGATAGCTACATACTGAAATCTCACA
GATGCATTGGTTTTTGAGTTTGCCAGACACATAAACGCGCTGAGTGGGGA
TAGCTGCATACTGAAATCTCACAGATGCATTGGTTTTTGAGTTTGCCAGA
CACATAAACGCGCTGAGTGGGGATAGCTGCATACTGAAATCTCACAGATG
CATTGGTTTTTGAGTTTGCCAGACACATAAACGCGCTGAGTGGGGATAGC
TGCATACTGAAACTTCACAGATGGATTGGTTTTTGACTTTGCCAGACACA
TAGACGCGCTGAGTAGGGAAACTACATATTAAAACCTCACGAGTTGAAGT
GATGTTGGATAGTGCCGGACACATAGACGCGCTGAGTAGGGAAACTACAT
ATTAAAACCTCACGAGTTGAAGTGATGTTGGATAGTGCCGGACACATAGA
CGCGCTGAGTGAGGATAGACACATAAACCTCACAGGTGATTTGTATTGGA
GATTGCCGGACACATAGACGTGTTGAGTGAGGATAGCTGCATACTAAAAC
CTCACAAGTGGATTGGTTTTTGAGTTTGCCACACACACAGACGCGCTGAG
CGGGGATAGCTACATAACGAAACCTCACGAGTTGAGTGATGTTGGATAGT
GCCAGACACATTGGCGCTTTGAGTGAGGATAGCTGCATATTGAGACCTAA
CGGGTTGAGTGACGTTTGCGACTGCCGGACTCATAGCCGCATCGAGTAAA
GAACGCTTCATACTGAAACCTCACAGGTTGATTTGTATTGGAGATTGCCG
GACACATAGGCGCGTTGAGTGAGGATAGCTGTATACTGAAAATCCACAGT
AGCAAGAGTGAGGGGACAATTCGAGAATGTAGTACACATAGACCCGACCC
TCAACCCG
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Coding sequence (CDS) from alignment at Scaffold_242:1189862..1193769-

>EsuBft1418_9a-0001 ID=EsuBft1418_9a-0001|Name=EsuBft1418_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=477bp|location=Sequence derived from alignment at Scaffold_242:1189862..1193769- (Ectocarpus subulatus male Bft15b)
ATGCAATTTGCAGCGAGGTTGGGGGGCCCCTCGGGCGGCCAGGTGCGAGG
TACGGCGGAAGGCACGGGCCCCAGCATGGGGGCCGGAGGACGTGGACATC
AGCAGAAACAGCCGGCGGGAGGAAGATTTCGGGGGCGTGACGCCGCTTCC
GAAGGAATCATCCAAGGTAGAAAGAGGGCGGGAAAGCCGACGTACTGCTT
CTTCCTGGACGTGAAAAAGGCATACGGCACCGTGTGGAGAACTGGGTTGT
GGAAACAAATGTCCAAATACGGGATCAAGGGGAAAATGTGGAGAGTGCTG
AAGAAGATGACAGAGTGTACGAAAAGCGCGGTCATGCTAGACGGAGAACT
GTCTAAATTCTTCGACATTGAGCAGGGGGTCCCACAAGGTTGCACGCTGT
CCCCAACATTGTTCCAGGTGTTCATCAACGATCTGTTGGAAGTCGTAGAG
GCAGTCCGGAAGGGAGTAAAAGNNNNN
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