EsuBft1418_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1418_8a-0001
Unique Name	EsuBft1418_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_242	contig	Scaffold_242:1187401..1188738 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G873
ProteomeId	EsuBft1418_8
Protein domains	SSF56672
Protein domains	Coil
Protein domains	PTHR19446
Protein domains	IPR000477
Owner	apollo_admin@sb-roscoff.fr
Note	rna-directed dna polymerase from mobile element jockey os:drosophila funebris gn:jockey\pol pe: [Automatic annotation]
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	1338
Evalue	1.83e-112
EggNOG OGs	COG0553@1\|root,COG2940@1\|root,COG5076@1\|root,KOG1075@1\|root,KOG0383@2759\|Eukaryota,KOG0384@2759\|Eukaryota,KOG1075@2759\|Eukaryota,KOG1081@2759\|Eukaryota,KOG1474@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
KEGG rclass	RC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG ko	ko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG Reaction	R00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathway	ko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG Module	M00089
EC	2.1.1.43,2.3.1.15,3.6.4.12
Description	acetylation-dependent protein binding
COG category	BK
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1418_8a	EsuBft1418_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_242 1187401..1188738 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1418_8a-0001-exon	EsuBft1418_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 1187401..1188738 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1418_8a-0001-cds	EsuBft1418_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_242 1187401..1188738 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1418_8a-0001	EsuBft1418_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_242 1187401..1188738 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_242:1187401..1188738-
coding sequence from alignment at Scaffold_242:1187401..1188738-

spliced messenger RNA

>EsuBft1418_8a-0001 ID=EsuBft1418_8a-0001|Name=EsuBft1418_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1338bp|location=Sequence derived from alignment at Scaffold_242:1187401..1188738- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGATGGTGAAGAAGCTTGGAGGATGGAAGCAGAAACTGTGGAAGGG
AGACAAGTTGGAGCTGCTGCTGTTTGGGATTCCAAGGGACATGACGAGGG
AACACTTCAAGAACTGTTGTGACAGGGAGGGACTGCACTGCCTAGCANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNACGAAAAGCGCGGTCATGCTAGACGGAGAACTGTCAAAATT
CTTCGACATTGAGCAGGGGGTCCCACAAGGTTGTACGCTGTCCCCAACAT
TGTTCCAGGTGTTCGTCAACGATCTGCTGGAGGTCGTAGAGGCAGTCCGG
AAGGAAGTCAAGGTCGGGGACACGGAAGCGTCGGTGGCAGGAATGCTGTT
TGCGGATAATATTGTCGGTATGTCGGACACCCTTGAGGGACTGCAACTGC
AAATTGACGCGGCGAAGAAGTTTACTGATAAGTGGAGATTGTCTGCCAAC
GTTAAGAAGAGTGCCGTCATGGTATGCAACGAGAACAAGGAGGAACCAGT
AGAACATAGATGGAAGTGGGGGATCGAGGAGATTGCAGTAGTGGACCAGT
ACACATACCTCGGAGTAGAGATCGCAAAAGACTGCTCGTGGAATGCACAC
ATGTCCAAGGTAGCGGAAAAGGGCAAAGCACGAGCAGGGAAGCTGCACCC
AATACTCGCAAACCGGCACCTCGATACACGCATCAAATTGACGGTTTTGA
AGAGCGTAATCGTACCGCCGCTAGAGTACGCCGGAGAAGTATGGGAAGGA
AATAAGAAGGTAGTGAAAGAACTCGAGGCGGCGCAGATGAAAGCAGCGAA
AATCATCCTTGGGTGCTCCAAGCGCACAAGTAATGCAGCTGTCAGGGCAC
AATCGGGGACCCAATCCCTACGGTCGGGAAGAGACGCGAGGAAGCTGACC
TGGCAGTATCGCATGTGCGGGATGGGAGAGGAGAGGTTGCCGAGAATTGT
ATGGGAGGCGAAGTGGGCAAACAAAAAGAGGGGTAGACAACCCACGGAAT
GGGTCAAGGTTGTAGAGGACGTATGGAAGGGTCTCGACATCGACGAAGAT
GAAACGCTGGAAACGGAGGGTCTAAAGGGGTTCAAGGACAAGATATCTGT
TGCTCGTGCCGAGAGAGCAGAACATAATCGAAGGAAAGAAGTCAAGGATA
AGGAGTCAAACCTCCAATGCCCTAGCAGCGATTTCTAG

protein sequence of EsuBft1418_8a-0001

>EsuBft1418_8 ID=EsuBft1418_8|Name=EsuBft1418_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=445bp
MRMVKKLGGWKQKLWKGDKLELLLFGIPRDMTREHFKNCCDREGLHCLAX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTKSAVMLDGELSKFFDIEQGVPQGCTLSPTLFQVFVNDLLEVVEAVR
KEVKVGDTEASVAGMLFADNIVGMSDTLEGLQLQIDAAKKFTDKWRLSAN
VKKSAVMVCNENKEEPVEHRWKWGIEEIAVVDQYTYLGVEIAKDCSWNAH
MSKVAEKGKARAGKLHPILANRHLDTRIKLTVLKSVIVPPLEYAGEVWEG
NKKVVKELEAAQMKAAKIILGCSKRTSNAAVRAQSGTQSLRSGRDARKLT
WQYRMCGMGEERLPRIVWEAKWANKKRGRQPTEWVKVVEDVWKGLDIDED
ETLETEGLKGFKDKISVARAERAEHNRRKEVKDKESNLQCPSSDF

mRNA from alignment at Scaffold_242:1187401..1188738-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1418_8a-0001 ID=EsuBft1418_8a-0001|Name=EsuBft1418_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1338bp|location=Sequence derived from alignment at Scaffold_242:1187401..1188738- (Ectocarpus subulatus male Bft15b)
ATGAGGATGGTGAAGAAGCTTGGAGGATGGAAGCAGAAACTGTGGAAGGG
AGACAAGTTGGAGCTGCTGCTGTTTGGGATTCCAAGGGACATGACGAGGG
AACACTTCAAGAACTGTTGTGACAGGGAGGGACTGCACTGCCTAGCANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNACGAAAAGCGCGGTCATGCTAGACGGAGAACTGTCAAAATT
CTTCGACATTGAGCAGGGGGTCCCACAAGGTTGTACGCTGTCCCCAACAT
TGTTCCAGGTGTTCGTCAACGATCTGCTGGAGGTCGTAGAGGCAGTCCGG
AAGGAAGTCAAGGTCGGGGACACGGAAGCGTCGGTGGCAGGAATGCTGTT
TGCGGATAATATTGTCGGTATGTCGGACACCCTTGAGGGACTGCAACTGC
AAATTGACGCGGCGAAGAAGTTTACTGATAAGTGGAGATTGTCTGCCAAC
GTTAAGAAGAGTGCCGTCATGGTATGCAACGAGAACAAGGAGGAACCAGT
AGAACATAGATGGAAGTGGGGGATCGAGGAGATTGCAGTAGTGGACCAGT
ACACATACCTCGGAGTAGAGATCGCAAAAGACTGCTCGTGGAATGCACAC
ATGTCCAAGGTAGCGGAAAAGGGCAAAGCACGAGCAGGGAAGCTGCACCC
AATACTCGCAAACCGGCACCTCGATACACGCATCAAATTGACGGTTTTGA
AGAGCGTAATCGTACCGCCGCTAGAGTACGCCGGAGAAGTATGGGAAGGA
AATAAGAAGGTAGTGAAAGAACTCGAGGCGGCGCAGATGAAAGCAGCGAA
AATCATCCTTGGGTGCTCCAAGCGCACAAGTAATGCAGCTGTCAGGGCAC
AATCGGGGACCCAATCCCTACGGTCGGGAAGAGACGCGAGGAAGCTGACC
TGGCAGTATCGCATGTGCGGGATGGGAGAGGAGAGGTTGCCGAGAATTGT
ATGGGAGGCGAAGTGGGCAAACAAAAAGAGGGGTAGACAACCCACGGAAT
GGGTCAAGGTTGTAGAGGACGTATGGAAGGGTCTCGACATCGACGAAGAT
GAAACGCTGGAAACGGAGGGTCTAAAGGGGTTCAAGGACAAGATATCTGT
TGCTCGTGCCGAGAGAGCAGAACATAATCGAAGGAAAGAAGTCAAGGATA
AGGAGTCAAACCTCCAATGCCCTAGCAGCGATTTCTAG

Coding sequence (CDS) from alignment at Scaffold_242:1187401..1188738-

>EsuBft1418_8a-0001 ID=EsuBft1418_8a-0001|Name=EsuBft1418_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1338bp|location=Sequence derived from alignment at Scaffold_242:1187401..1188738- (Ectocarpus subulatus male Bft15b)
ATGAGGATGGTGAAGAAGCTTGGAGGATGGAAGCAGAAACTGTGGAAGGG
AGACAAGTTGGAGCTGCTGCTGTTTGGGATTCCAAGGGACATGACGAGGG
AACACTTCAAGAACTGTTGTGACAGGGAGGGACTGCACTGCCTAGCANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNACGAAAAGCGCGGTCATGCTAGACGGAGAACTGTCAAAATT
CTTCGACATTGAGCAGGGGGTCCCACAAGGTTGTACGCTGTCCCCAACAT
TGTTCCAGGTGTTCGTCAACGATCTGCTGGAGGTCGTAGAGGCAGTCCGG
AAGGAAGTCAAGGTCGGGGACACGGAAGCGTCGGTGGCAGGAATGCTGTT
TGCGGATAATATTGTCGGTATGTCGGACACCCTTGAGGGACTGCAACTGC
AAATTGACGCGGCGAAGAAGTTTACTGATAAGTGGAGATTGTCTGCCAAC
GTTAAGAAGAGTGCCGTCATGGTATGCAACGAGAACAAGGAGGAACCAGT
AGAACATAGATGGAAGTGGGGGATCGAGGAGATTGCAGTAGTGGACCAGT
ACACATACCTCGGAGTAGAGATCGCAAAAGACTGCTCGTGGAATGCACAC
ATGTCCAAGGTAGCGGAAAAGGGCAAAGCACGAGCAGGGAAGCTGCACCC
AATACTCGCAAACCGGCACCTCGATACACGCATCAAATTGACGGTTTTGA
AGAGCGTAATCGTACCGCCGCTAGAGTACGCCGGAGAAGTATGGGAAGGA
AATAAGAAGGTAGTGAAAGAACTCGAGGCGGCGCAGATGAAAGCAGCGAA
AATCATCCTTGGGTGCTCCAAGCGCACAAGTAATGCAGCTGTCAGGGCAC
AATCGGGGACCCAATCCCTACGGTCGGGAAGAGACGCGAGGAAGCTGACC
TGGCAGTATCGCATGTGCGGGATGGGAGAGGAGAGGTTGCCGAGAATTGT
ATGGGAGGCGAAGTGGGCAAACAAAAAGAGGGGTAGACAACCCACGGAAT
GGGTCAAGGTTGTAGAGGACGTATGGAAGGGTCTCGACATCGACGAAGAT
GAAACGCTGGAAACGGAGGGTCTAAAGGGGTTCAAGGACAAGATATCTGT
TGCTCGTGCCGAGAGAGCAGAACATAATCGAAGGAAAGAAGTCAAGGATA
AGGAGTCAAACCTCCAATGCCCTAGCAGCGATTTCTAG