EsuBft1418_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1418_7a-0001
Unique Name	EsuBft1418_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_242	contig	Scaffold_242:1180064..1184525 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1418_7
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	355
Hectar predicted targeting category	no signal peptide or anchor
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1418_7a	EsuBft1418_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_242 1180064..1184525 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1418_7a-0001	EsuBft1418_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_242 1180140..1180295 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1418_7a-0001-exon	agat-exon-57479	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 1180064..1182666 +
EsuBft1418_7a-0001-exon	agat-exon-57478	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 1182880..1183418 +
EsuBft1418_7a-0001-exon	EsuBft1418_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 1183482..1183566 +
EsuBft1418_7a-0001-exon	agat-exon-57480	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 1184200..1184525 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1418_7a-0001-exon	agat-five_prime_utr-2453	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_242 1180064..1180139 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1418_7a-0001-cds	EsuBft1418_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_242 1180140..1180295 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1418_7a-0001-exon	agat-three_prime_utr-3723	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_242 1180296..1182666 +
EsuBft1418_7a-0001-exon	agat-three_prime_utr-3724	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_242 1182880..1183418 +
EsuBft1418_7a-0001-exon	agat-three_prime_utr-3725	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_242 1183482..1183566 +
EsuBft1418_7a-0001-exon	agat-three_prime_utr-3726	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_242 1184200..1184525 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_242:1180064..1184525+
coding sequence from alignment at Scaffold_242:1180064..1184525+

spliced messenger RNA

>EsuBft1418_7a-0001 ID=EsuBft1418_7a-0001|Name=EsuBft1418_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3553bp|location=Sequence derived from alignment at Scaffold_242:1180064..1184525+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTGATATCTACGTACCCTCGGAAAACGAACCCACGTGAGGACGAGTTCAT
CGTTGAGGTGGTGAACAACACACACGATGGTCGATTTAGCAAGCGAGCCC
TGCTTGACTTCCATTTCCGGCGAGTTGAATGAGTGCCTGCACCGTACTGT
CCTGTGGGGTCTTTCCCTGAGACGACCCCGGTTGTTAATGACCCGATGCG
TGACGTCTTACGTCCAGAACAGATGGGGATGACATCTTCCACGCAACCTT
ACGGTGTGTCGGTTTAAGGTACAAACGCGGCATCGAACAAACGTCTTCCA
CGACGCCATCTGTATGTGGAGGTTTACCGAATATCGGACGATAAACAGAA
CTTGGTATATGGCCGAGCGAAGATTCTAAATGGAGATGTACCGATTCTAC
CCGACACAACGGCCGCCGCGTAGTCCGTCCAAAGCAACTGTTCTCTACAC
TTAACACCAAGGGGCGACCTACAGTACAGTAGTCTGTGGAAGCTATATAA
CAGTATCACCCGAACCAACGTCGCAGCTTCGTTGGGCATGGGGTAGGCTT
AGGGATAGGGTTTGAGGGCTACGGGTAAGCACTGTGGTTCTCCCGATCTG
TCCTCCTGATCCTTTCAGCGGAAACACGGCAAACTCTCTACGAACTTTCA
TGGATCGCACCCAGCTGATGTGGAGAAGAATTTTCATCAGCCGGACAATA
CCGCGCGGGCGGTATTGCAACTATTGTCTATGAAGTCTATGATACAACTA
GACAAAACAATGGGAGCTTACAGCAAGACTACTCCGGGGTATCTCAACCA
TTCCTGCCAGGGAAAGCTACAGTAGAACCAGCATGTTTGCTGGAGATCAG
GTACAGCAAGGAATCAGAGCAGGCTGCCGTCAAGATGGTCTACCAAGGAA
TACTGTTGAGTCGCTGTCGTGCCGGCGTTGTGTTGCTGGCGACGTATGTA
GTCAAACCAATATCCTCTCGGGCTTACACTTGCGAAATATGCCCATCATG
TTGCCGAGGAGAGGGCGTTAGGCTTACAGTACTATGTGGACAAGAATTAT
TCCATGGGACGCGGAGTCTCTCAAGTCTACGTCTTATTTGGGAGTGCATA
ACAAAAGTGGTTTCAGCGCGGCGCGAAAAAAAATTGCCCCAGAGGTTCCG
GTGAGCTGGACGAGTGGTGGTGTCAGTCGTGAATTAATTGTAAGACCAGA
CTACTGTATGTACAGGTGCAAGCGGTCGCGTGAATGCGTCTCGGGCGATT
CCGACGATGACATGACTGCTCATCGAGGTTTAAGAAACCCGGACGACTGG
GAGCGAGGAAGAGCTGTGTTGCCCGACGATCATACGTCTCAGCGATCACG
TATAGCTCACAATAGCGCTCACAGAGAATAAATGAACCTCCTGATTGAAG
GCTGGCGGGAGCTGTCGAATCTCAACATTCTTTCTAAATATATCGGCTCT
AAGGGGTATCATTAACGACAAAAAATCACGGAACATTTTACGGAATCGTT
GTTTCTTGAACATATATGCAGGCGTTTTTCCCCGGAAATATGAAAAGAAG
GAGCCGGGATTTTTTGGGCTTGCTACTTTAACGGATCCGTGACAGAAGCA
TCGGACAAGCGCACTTCGGACAAGCGCACCGCGACTGAGAACGCTAGAAA
GACCTGCCAGACTCACATCTTGATCTGTTGTGGAGATGGATAAGCGGCAG
AAGCGGCGTTCAGTCAGTTCTTGGTCCAAAACTAGAGATTGCGTGGTGCT
CTCGTCTTCAACTGCTGCTGTTGGTGCTGGGGAATTTTTTCACTCATAGC
AAACACGGAAACAGTAGAACGAGTACAGCAGCAGCACCAAGACCTCCAAC
GCGCTGATTCATTCGGTTCGGCTGTCTATATGATACCATCTCCCGGCGCC
GTGCTGCTTCGTGGGTATTGGGTGCTTGGGTGCTGCTCAATAAGGTGTGT
GAGAGACGTGTGCCACCTCACCAAAATGCCGTTGGAAAAAATGCGGCGAG
ATTATCTGTTCTTGGTCGGACTCGTCAACATCAATCCACAGCACGACGCA
GCAGAAGAGCAACAGGGCCTCCGACATGCTAGTTCTTTCGGATTGGCCAT
GTACATGATGCTGGCCGTCAGCGCGGCTGCCGCCCAATGATTGTTGAGCT
CGTCTTCCTTTGGGTAGTTGATGGTTAAAGATGGGAGTCGCAACCGTGAA
AAATGAGCTGGCGAACTGAAGAAATCGAAAGCAACACCCAGGCTGCGTCA
ATCTGCCCTGCGCCTGTTGTTGCAGAAAACTGAAAGCAGCAGGCCGGGTG
GATAGGATCTTTCGAAGTGTGTTGTCCTCTGTGTCGGTTGCTGCTCATAG
CGCTTTCACCACTGCTCTACGGTGAGCAACACCAAGTCAACCTGTTGTGT
GCCAAGCAATGCGTGTATTCAGGGAAGGAAACGTACTTTTTGGATGACAT
CACGAATAGGACAAGCGAAAAAAAGTCAGGTTTTCTTTTCACAGTTGCGT
GGAAAATTGCACGACTTTTCCGAAGCGTTAACAACGAGCAAACGTTGTGC
GTCTCCACAACGGTACTACAGCAGTACACTCGCGGGAGCAGAACTCAAAA
CAGGCTCTAGCTGCTGCAGGCTCTAGCTGCTGCAGGCTGCTGTGTACCGT
TGTGATTGCCAGGTGCGAGCACCAGGGTGCCACGAGCTTGGAGCCTACCG
CTGATCGGAGATTGGGATGGTGAAAAATTATTCCAGCGAATTCGAGCGAT
GCTAGTGGCATCATCGTGTGTAATCTCCCGTGGTCCTCTAATGTGTGAAA
TCTCCCGTGGTACTCTCATGTGCCGCCAGCAGGATAGAGCGAAAGCTCTA
TCTCACACATCCAGCAGTACTAAGTCTTGTAGTCTGCTGCAAAACGTTTG
AAGTATACTGCAATACCAGCTTTCGTGGGAATTAGTTCATACCTGTGGGA
GATGGTGAAGGGAATGATTGTAGGAAGCAATGCGTGCCAAGTGCCGGTGT
GCCCCCTTCCTCCAAAATATTTCTTTTATTGCCGTTTGGCCGCAGGAGCT
GGGCCGAGGGTCAAAGCGGGGAATTTGCCGGGGCATTGGCCGGGGCCTTT
TATGTGGGTCTGGCAGTGCTGCACGACTGAAAAAAATAAAAAGCGGCTCG
CGGCGCAACAGACCTCCACACCCAGCACGGGCTCTAGAGGGCGAACCAGA
GGCTAAACTGCCCAGAAAACTCGAGAGGTATTCAATGCATGGGATAACGG
CCGGCACAGGTCGTGCTGACAGATGACCCGTCGGAGAGGTAGGCGGGGCA
ACCGGGCTGGTGGGGCTAACAACCCCGCAGGAGCTCAACCGGCTACGCCA
CCGGCTACGCCTCCGAACCAGCCTAGGAGCTCTGTTACACCCGGAAGCGG
GGGTATGCAGCCAGCATGAGACCTTCGACAGCTTACGGAAGGCACGCTAA
CCCCGCGTACTCCAGTGGCGACAACTCAGGGGGAGAGATAACAAGTGAAC
GTGCACGGATCGGGAGCGGGAGAGAGGGCAACTTAACCACTGAGGTGCGC
ACC

protein sequence of EsuBft1418_7a-0001

>EsuBft1418_7 ID=EsuBft1418_7|Name=EsuBft1418_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=51bp
MVDLASEPCLTSISGELNECLHRTVLWGLSLRRPRLLMTRCVTSYVQNRW
G

mRNA from alignment at Scaffold_242:1180064..1184525+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1418_7a-0001 ID=EsuBft1418_7a-0001|Name=EsuBft1418_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4462bp|location=Sequence derived from alignment at Scaffold_242:1180064..1184525+ (Ectocarpus subulatus male Bft15b)
TTGATATCTACGTACCCTCGGAAAACGAACCCACGTGAGGACGAGTTCAT
CGTTGAGGTGGTGAACAACACACACGATGGTCGATTTAGCAAGCGAGCCC
TGCTTGACTTCCATTTCCGGCGAGTTGAATGAGTGCCTGCACCGTACTGT
CCTGTGGGGTCTTTCCCTGAGACGACCCCGGTTGTTAATGACCCGATGCG
TGACGTCTTACGTCCAGAACAGATGGGGATGACATCTTCCACGCAACCTT
ACGGTGTGTCGGTTTAAGGTACAAACGCGGCATCGAACAAACGTCTTCCA
CGACGCCATCTGTATGTGGAGGTTTACCGAATATCGGACGATAAACAGAA
CTTGGTATATGGCCGAGCGAAGATTCTAAATGGAGATGTACCGATTCTAC
CCGACACAACGGCCGCCGCGTAGTCCGTCCAAAGCAACTGTTCTCTACAC
TTAACACCAAGGGGCGACCTACAGTACAGTAGTCTGTGGAAGCTATATAA
CAGTATCACCCGAACCAACGTCGCAGCTTCGTTGGGCATGGGGTAGGCTT
AGGGATAGGGTTTGAGGGCTACGGGTAAGCACTGTGGTTCTCCCGATCTG
TCCTCCTGATCCTTTCAGCGGAAACACGGCAAACTCTCTACGAACTTTCA
TGGATCGCACCCAGCTGATGTGGAGAAGAATTTTCATCAGCCGGACAATA
CCGCGCGGGCGGTATTGCAACTATTGTCTATGAAGTCTATGATACAACTA
GACAAAACAATGGGAGCTTACAGCAAGACTACTCCGGGGTATCTCAACCA
TTCCTGCCAGGGAAAGCTACAGTAGAACCAGCATGTTTGCTGGAGATCAG
GTACAGCAAGGAATCAGAGCAGGCTGCCGTCAAGATGGTCTACCAAGGAA
TACTGTTGAGTCGCTGTCGTGCCGGCGTTGTGTTGCTGGCGACGTATGTA
GTCAAACCAATATCCTCTCGGGCTTACACTTGCGAAATATGCCCATCATG
TTGCCGAGGAGAGGGCGTTAGGCTTACAGTACTATGTGGACAAGAATTAT
TCCATGGGACGCGGAGTCTCTCAAGTCTACGTCTTATTTGGGAGTGCATA
ACAAAAGTGGTTTCAGCGCGGCGCGAAAAAAAATTGCCCCAGAGGTTCCG
GTGAGCTGGACGAGTGGTGGTGTCAGTCGTGAATTAATTGTAAGACCAGA
CTACTGTATGTACAGGTGCAAGCGGTCGCGTGAATGCGTCTCGGGCGATT
CCGACGATGACATGACTGCTCATCGAGGTTTAAGAAACCCGGACGACTGG
GAGCGAGGAAGAGCTGTGTTGCCCGACGATCATACGTCTCAGCGATCACG
TATAGCTCACAATAGCGCTCACAGAGAATAAATGAACCTCCTGATTGAAG
GCTGGCGGGAGCTGTCGAATCTCAACATTCTTTCTAAATATATCGGCTCT
AAGGGGTATCATTAACGACAAAAAATCACGGAACATTTTACGGAATCGTT
GTTTCTTGAACATATATGCAGGCGTTTTTCCCCGGAAATATGAAAAGAAG
GAGCCGGGATTTTTTGGGCTTGCTACTTTAACGGATCCGTGACAGAAGCA
TCGGACAAGCGCACTTCGGACAAGCGCACCGCGACTGAGAACGCTAGAAA
GACCTGCCAGACTCACATCTTGATCTGTTGTGGAGATGGATAAGCGGCAG
AAGCGGCGTTCAGTCAGTTCTTGGTCCAAAACTAGAGATTGCGTGGTGCT
CTCGTCTTCAACTGCTGCTGTTGGTGCTGGGGAATTTTTTCACTCATAGC
AAACACGGAAACAGTAGAACGAGTACAGCAGCAGCACCAAGACCTCCAAC
GCGCTGATTCATTCGGTTCGGCTGTCTATATGATACCATCTCCCGGCGCC
GTGCTGCTTCGTGGGTATTGGGTGCTTGGGTGCTGCTCAATAAGGTGTGT
GAGAGACGTGTGCCACCTCACCAAAATGCCGTTGGAAAAAATGCGGCGAG
ATTATCTGTTCTTGGTCGGACTCGTCAACATCAATCCACAGCACGACGCA
GCAGAAGAGCAACAGGGCCTCCGACATGCTAGTTCTTTCGGATTGGCCAT
GTACATGATGCTGGCCGTCAGCGCGGCTGCCGCCCAATGATTGTTGAGCT
CGTCTTCCTTTGGGTAGTTGATGGTTAAAGATGGGAGTCGCAACCGTGAA
AAATGAGCTGGCGAACTGAAGAAATCGAAAGCAACACCCAGGCTGCGTCA
ATCTGCCCTGCGCCTGTTGTTGCAGAAAACTGAAAGCAGCAGGCCGGGTG
GATAGGATCTTTCGAAGTGTGTTGTCCTCTGTGTCGGTTGCTGCTCATAG
CGCTTTCACCACTGCTCTACGGTGAGCAACACCAAGTCAACCTGTTGTGT
GCCAAGCAATGCGTGTATTCAGGGAAGGAAACGTACTTTTTGGATGACAT
CACGAATAGGACAAGCGAAAAAAAGTCAGGTTTTCTTTTCACAGTTGCGT
GGAAAATTGCACGACTTTTCCGAAGCGTTAACAACGAGCAAACGTTGTGC
GTCTCCACAACGGTACTACAGCAGTACACTCGCGGGAGCAGAACTCAAAA
CAGGTACAGTAGTCTAGCACTACATACAAAGGCATTGTTTGATCAGCACC
CACGCACTGTGAGTAGTGCCAGAAGCAGCAACGACGTGCGCAGGCGCGGA
TGAGGAAAACGAGTGTGCTTGGCAAACAGTCGTCGGCAGAAGGATTCGAT
TCTTCATCGGACGAAAACAACACTAACTCAGCCCGTCTTGAGTGCGCTTC
CGCCCTGCTGCTGCAGGCTCTAGCTGCTGCAGGCTCTAGCTGCTGCAGGC
TGCTGTGTACCGTTGTGATTGCCAGGTGCGAGCACCAGGGTGCCACGAGC
TTGGAGCCTACCGCTGATCGGAGATTGGGATGGTGAAAAATTATTCCAGC
GAATTCGAGCGATGCTAGTGGCATCATCGTGTGTAATCTCCCGTGGTCCT
CTAATGTGTGAAATCTCCCGTGGTACTCTCATGTGCCGCCAGCAGGATAG
AGCGAAAGCTCTATCTCACACATCCAGCAGTACTAAGTCTTGTAGTCTGC
TGCAAAACGTTTGAAGTATACTGCAATACCAGCTTTCGTGGGAATTAGTT
CATACCTGTGGGAGATGGTGAAGGGAATGATTGTAGGAAGCAATGCGTGC
CAAGTGCCGGTGTGCCCCCTTCCTCCAAAATATTTCTTTTATTGCCGTTT
GGCCGCAGGAGCTGGGCCGAGGGTCAAAGCGGGGAATTTGCCGGGGCATT
GGCCGGGGCCTTTTATGTGGGTCTGGCAGTGCTGCACGACTGAAAAAAAT
AAAAAGTAAGTGTGAGAAAAAACGCTTCCAACGGGAAAGCAGCCCCCTGT
GGAAACCCCTCGGATCAGGCGGCTCGCGGCGCAACAGACCTCCACACCCA
GCACGGGCTCTAGAGGGCGAACCAGAGGCTAAACTGCCCAGAAAACTCGA
GAGGTATGTTAACACGATGCAAGGGCACATCAGGGTATGTTTTATACGCC
CAGGTACACATGGTAGGGTGAGAAATTCAGACTTTAGCTAGAGCATACCA
CACTGCGGCAGCACCAATATCCACGAGGAAGCATCACACGCGAGCCGACC
TCTGCGCAAGCTTGGCGTGTTGCAGCCCAATTATGCTGAAGACGTATACC
TAGGTCTCATTTCCACCTAATGCAAAAGGTTTGAGGTGATTTAGTGCGTT
AGAAAATAAGCATGGTGTGTTCAAAACTCAAATTTCAGGAGAGCCTACGT
CGGGGGGTTCGAACGCACGCTCTCGCATGTTGCGCATGTTTAGTCCACTG
GATACACGACCCCCATCCAAAGAAAAAATGGAAATGCTCGATACAGTCCG
GCCGCCACAAAAATTTATAGGCTGCTGAAATCGCTCATGATGTATGTGAC
ATCGTATACTGTGTTGTACTCAAGAGAATACGTATAACAGCAGTCTTTAT
CAGTTGATACTGATATTTCTAACACATGGCTGTCAAGAGACAACGATAGA
ACCACAGACATAGCGTAGGTGTGCGCCTGCGTAGGCTGTACGTGTCACGT
GACCTTTTGTAATTTTTGGTTGTATACCATGGCCAGGTATTCAATGCATG
GGATAACGGCCGGCACAGGTCGTGCTGACAGATGACCCGTCGGAGAGGTA
GGCGGGGCAACCGGGCTGGTGGGGCTAACAACCCCGCAGGAGCTCAACCG
GCTACGCCACCGGCTACGCCTCCGAACCAGCCTAGGAGCTCTGTTACACC
CGGAAGCGGGGGTATGCAGCCAGCATGAGACCTTCGACAGCTTACGGAAG
GCACGCTAACCCCGCGTACTCCAGTGGCGACAACTCAGGGGGAGAGATAA
CAAGTGAACGTGCACGGATCGGGAGCGGGAGAGAGGGCAACTTAACCACT
GAGGTGCGCACC

Coding sequence (CDS) from alignment at Scaffold_242:1180064..1184525+

>EsuBft1418_7a-0001 ID=EsuBft1418_7a-0001|Name=EsuBft1418_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=156bp|location=Sequence derived from alignment at Scaffold_242:1180064..1184525+ (Ectocarpus subulatus male Bft15b)
ATGGTCGATTTAGCAAGCGAGCCCTGCTTGACTTCCATTTCCGGCGAGTT
GAATGAGTGCCTGCACCGTACTGTCCTGTGGGGTCTTTCCCTGAGACGAC
CCCGGTTGTTAATGACCCGATGCGTGACGTCTTACGTCCAGAACAGATGG
GGATGA