EsuBft1418_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1418_5a-0001
Unique NameEsuBft1418_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:1176898..1179414 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LPY1
ProteomeIdEsuBft1418_5
Protein domainsSSF63829
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length120
Hectar predicted targeting categoryother localisation
Evalue1e-76
EggNOG OGs2D5U8@1|root,2SZPX@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1418_5aEsuBft1418_5aEctocarpus subulatus male Bft15bgeneScaffold_242 1176898..1179414 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1418_5a-0001EsuBft1418_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 1177515..1179414 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1418_5a-0001-exonagat-exon-57477Ectocarpus subulatus male Bft15bexonScaffold_242 1176898..1177685 -
EsuBft1418_5a-0001-exonagat-exon-57475Ectocarpus subulatus male Bft15bexonScaffold_242 1178085..1178353 -
EsuBft1418_5a-0001-exonagat-exon-57476Ectocarpus subulatus male Bft15bexonScaffold_242 1179118..1179249 -
EsuBft1418_5a-0001-exonEsuBft1418_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 1179399..1179414 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1418_5a-0001-exonagat-three_prime_utr-3721Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 1176898..1177514 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1418_5a-0001-cdsEsuBft1418_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 1177515..1177685 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1418_5a-0001 ID=EsuBft1418_5a-0001|Name=EsuBft1418_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1205bp|location=Sequence derived from alignment at Scaffold_242:1176898..1179414- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCATCAATCAAATGGGAACATCTGGAAGGGGGATCTCGAAACCGG
CCAGGGCGAAGTGTTTGAGCTTGGCGCTCCGGGCCCCGCCGTAGGCCTGG
ACCACGACCGCCGATCTGGCTACCTTTTCGTCGCTGGGGGACCTGTAGGC
ACGGCACGCGTGTACGATGAGGATTTCGCTTTGGTCGCAGATCTGGTCCT
GAGTGACGGCAACTCGTCATTTGTGAATGACGTCATCATCACCAAGACCG
CCGCATACTTCACGGATTCTTTTCAACCGAAGATATACAAGGCAAGGCAA
CTGCGCCCTTCTTTGAATGAATTTCGTCCAAGAGAATGGGGGCACAGCAT
GTCCAGTCGGCAGCACCCGGTGCTCCAATTCGAGCAAGTTTCCACCGTTT
CCATCGAAGAGAAAAACGTGAACCTCGACAGGGAGACCGGTGCGTTGGTG
GATGGATTGGCTGTCCACACGCTAGTCCTCAGCGACAACGTTCCCGTGTT
GGAAGGCGCGTTCAATGTCAACGGTATCGAGGTGAGCGACATGTCGGAAA
GGGCACAGCCCAAATCTGTGAGAACCATACCTCAGTAGCGAGTGCGAAAG
CAAGTGACCCAAAATAATGGTTTCCATTCTCACGTGTGAGGGTATCGTGC
GATAATATATGCGCCCTCACGCCTTGACATTGCACGTACTCATGCGCAGC
AGTTGGAACGTTTCTTGTTCCTCCTTCGCCGTAAGACACGGTCTAGGTGT
GCAGCGGAGAGAGAATCCATCTGCCTTGTGTACCCCCTCGCATTGTTTCG
CTATCGCCCTAAAAACAAACGCACCACAGTACTATTAATACTATGTTCGC
GCCATCGTGTCAATGAAATTATTAGAAATGAGTAAGACCTGAGACTACAC
GATTAGGATGTTTCTTCACTGAAGTTCTGATCGATAGCGACTCCTCCGTT
GGGTTCCTCAGTCATCGCTCACCGAGTTGTCCAGTGGAATAACATTTTCG
ATCAAACGATGTGAACGCGGTATCGATTCCCAGCTACATGGTACAACGTT
CGGCAACCTGTTTAGCTCCAACTAGACTTTTCCAGCAGCGCATGGCACCG
TGTATGGCGGTGAGTCCGGCCTAGGAGATCAATGCCAGAGCTTGGAGGGC
CAAGGGGCCCAAGGCACACCTGGTGACGGTCAACGCTACTACTACTCAAC
GAGTC
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protein sequence of EsuBft1418_5a-0001

>EsuBft1418_5 ID=EsuBft1418_5|Name=EsuBft1418_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=195bp
MAHQSNGNIWKGDLETGQGEVFELGAPGPAVGLDHDRRSGYLFVAGGPVG
TARVYDEDFALVADLVLSDGNSSFVNDVIITKTAAYFTDSFQPKIYKARQ
LRPSLNEFRPREWGHSMSSRQHPVLQFEQVSTVSIEEKNVNLDRETGALV
DGLAVHTLVLSDNVPVLEGAFNVNGIEVSDMSERAQPKSVRTIPQ
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mRNA from alignment at Scaffold_242:1176898..1179414-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1418_5a-0001 ID=EsuBft1418_5a-0001|Name=EsuBft1418_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2517bp|location=Sequence derived from alignment at Scaffold_242:1176898..1179414- (Ectocarpus subulatus male Bft15b)
ATGGCCCATCAATCAAGTTGATGTTGGCTCGGCTTATTTCGCTTTCGACC
AATTTGGTTGAGACGGGCGGGTTTTTCCTCGAACGTCTCACGCTTTGTCT
CAGCGTTCCTTTATGTTGAAGACTAAGGAGTTGCCCTTTGTTTGTTCATC
CCGTGGGTGATCCAGATGGGAACATCTGGAAGGGGGATCTCGAAACCGGC
CAGGGCGAAGTGTTTGAGCTTGGCGCTCCGGGCCCCGCCGTAGGCCTGGA
CCACGACCGCCGATCTGGCTACCTTTTCGTCGCTGGGGGACCTGTAGGTG
CGCCACCATACTATTGTGTGTTGTAAGCTCTGCTCTGTCCAATGGTTCTT
CATTCCAGTGGCTGTTGATCGATTGACGATGGTCTGTATCTTACCTTTCG
AACTCTTGAATCCATGCGATATCATAGGATAAAATGAACGAAAGCACCAT
AGAACGAAGGTGGAGACAAATAGCAACTCTGGCTGTGAAATTCTTTTTTG
GGAGTCGGGTTGATACAGAGCGTTCCACAAGGTATAGAAACTGAGGTTCA
GCATGAACATCGCAACACATGTGTCCATGCGGCACCGTCAAGTATATTGA
CACCGAGGTATTAGTTCTGATTTGTGCACACGTTCCTTCGTTGGGGTTGG
CATGGAGCGAATGAATCCAGGCGAAACAAATAACGTTTGCATCACTCCCT
TCATGGTCTGCAGCTTGCGTCCTTCGTCTGGCACACTGTCGTGAGGCTGG
GTGATATGCTGACCTCTTCGGGCAATATTGCTACATGGCTGCATGAGGGC
TGATTCGGTCGCGGTATCTTGGCTGCGTAAATATTAACCACCCAAACAGC
GGATACTAGTTTATACAAGCTTGGCTTAACACATAATTGTGAGAGTTGGA
CGAAACGTGACGGAACAACTCGAAATCGGCACCATTGCGGGCGGGCTCTG
TAACCGCGAGCGAACCAAGGCCCTTCGCGAGGGTATGAATTAGAACCACC
ATGTCTCCCCTTATGTCTCGTTTTCGTGTCTCGTCTGACTAACGCACTTG
AAACCTATCAGGCACGGCACGCGTGTACGATGAGGATTTCGCTTTGGTCG
CAGATCTGGTCCTGAGTGACGGCAACTCGTCATTTGTGAATGACGTCATC
ATCACCAAGACCGCCGCATACTTCACGGATTCTTTTCAACCGAAGATATA
CAAGGCAAGGCAACTGCGCCCTTCTTTGAATGAATTTCGTCCAAGAGAAT
GGGGGCACAGCATGTCCAGTCGGCAGCACCCGGTGCTCCAATTCGAGCAA
GTTTCCACCGTTTCCATCGAAGAGAAAAACGTATCGACGGAAAAATGCAC
ACTAAAATGTGCGGAGTCGTCTGCCCTGATAAGATGTTCAAGTTTGCATT
CAACGATGAATACGAGAGAGAACACCGCGTAGGATGGAAACGATTCTCGG
TCGGCGCGGCAATGAATCTGTAAACGATCATACGTTCTGTTCTCTTTGAG
GTACTCATTATTTTCTCGTTTCTTGTCTTTGCACGCGAATTGTGGGTTTT
TCATTTTCTTCTCAGGTTGTCTGATTCTCCTCTTGATGCGCCTTCTGGGA
GTCAGTCAGGCGTTGACCGCGCAAGTTATCTTCCATTGATTAGTACACCA
CGCATGTCTACAACAACGACCTCGGGTACAGCGTATTGAATTGGTTTTAC
AGCCGGATTAATCGTTGATTGGTCCACAGGTGAACCTCGACAGGGAGACC
GGTGCGTTGGTGGATGGATTGGCTGTCCACACGCTAGTCCTCAGCGACAA
CGTTCCCGTGTTGGAAGGCGCGTTCAATGTCAACGGTATCGAGGTGAGCG
ACATGTCGGAAAGGGCACAGCCCAAATCTGTGAGAACCATACCTCAGTAG
CGAGTGCGAAAGCAAGTGACCCAAAATAATGGTTTCCATTCTCACGTGTG
AGGGTATCGTGCGATAATATATGCGCCCTCACGCCTTGACATTGCACGTA
CTCATGCGCAGCAGTTGGAACGTTTCTTGTTCCTCCTTCGCCGTAAGACA
CGGTCTAGGTGTGCAGCGGAGAGAGAATCCATCTGCCTTGTGTACCCCCT
CGCATTGTTTCGCTATCGCCCTAAAAACAAACGCACCACAGTACTATTAA
TACTATGTTCGCGCCATCGTGTCAATGAAATTATTAGAAATGAGTAAGAC
CTGAGACTACACGATTAGGATGTTTCTTCACTGAAGTTCTGATCGATAGC
GACTCCTCCGTTGGGTTCCTCAGTCATCGCTCACCGAGTTGTCCAGTGGA
ATAACATTTTCGATCAAACGATGTGAACGCGGTATCGATTCCCAGCTACA
TGGTACAACGTTCGGCAACCTGTTTAGCTCCAACTAGACTTTTCCAGCAG
CGCATGGCACCGTGTATGGCGGTGAGTCCGGCCTAGGAGATCAATGCCAG
AGCTTGGAGGGCCAAGGGGCCCAAGGCACACCTGGTGACGGTCAACGCTA
CTACTACTCAACGAGTC
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Coding sequence (CDS) from alignment at Scaffold_242:1176898..1179414-

>EsuBft1418_5a-0001 ID=EsuBft1418_5a-0001|Name=EsuBft1418_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=588bp|location=Sequence derived from alignment at Scaffold_242:1176898..1179414- (Ectocarpus subulatus male Bft15b)
ATGGCCCATCAATCAAATGGGAACATCTGGAAGGGGGATCTCGAAACCGG
CCAGGGCGAAGTGTTTGAGCTTGGCGCTCCGGGCCCCGCCGTAGGCCTGG
ACCACGACCGCCGATCTGGCTACCTTTTCGTCGCTGGGGGACCTGTAGGC
ACGGCACGCGTGTACGATGAGGATTTCGCTTTGGTCGCAGATCTGGTCCT
GAGTGACGGCAACTCGTCATTTGTGAATGACGTCATCATCACCAAGACCG
CCGCATACTTCACGGATTCTTTTCAACCGAAGATATACAAGGCAAGGCAA
CTGCGCCCTTCTTTGAATGAATTTCGTCCAAGAGAATGGGGGCACAGCAT
GTCCAGTCGGCAGCACCCGGTGCTCCAATTCGAGCAAGTTTCCACCGTTT
CCATCGAAGAGAAAAACGTGAACCTCGACAGGGAGACCGGTGCGTTGGTG
GATGGATTGGCTGTCCACACGCTAGTCCTCAGCGACAACGTTCCCGTGTT
GGAAGGCGCGTTCAATGTCAACGGTATCGAGGTGAGCGACATGTCGGAAA
GGGCACAGCCCAAATCTGTGAGAACCATACCTCAGTAG
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