EsuBft1418_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1418_4a-0001
Unique NameEsuBft1418_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:1175027..1176691 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LPY1
ProteomeIdEsuBft1418_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length51
Hectar predicted targeting categoryother localisation
Evalue2.96e-63
EggNOG OGs2D5U8@1|root,2SZPX@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1418_4aEsuBft1418_4aEctocarpus subulatus male Bft15bgeneScaffold_242 1175027..1176691 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1418_4a-0001-exonagat-exon-57474Ectocarpus subulatus male Bft15bexonScaffold_242 1175027..1175269 -
EsuBft1418_4a-0001-exonEsuBft1418_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 1176416..1176691 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1418_4a-0001-exonagat-three_prime_utr-3720Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 1175027..1175062 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1418_4a-0001-cdsEsuBft1418_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 1175063..1175269 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1418_4a-0001EsuBft1418_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 1175063..1176691 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1418_4a-0001 ID=EsuBft1418_4a-0001|Name=EsuBft1418_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=519bp|location=Sequence derived from alignment at Scaffold_242:1175027..1176691- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATACATGTAGTAATTGGGCGAATCGATCCCAACCATCGAAGTTGCAA
CGTACGCCACCCATTCACGGTGGAATTTGCAAATTCCACGAAGTTACATA
TCCTCCTGATCGTTCCCATTCTTTCTGGAAACTCCTCTCAGGCCACAGAC
GACGGCAGCGCGCTAATCATTGTCAACTCGGAATCGCAGCAGCTGTTCGC
CGTCGACCCCGACACCGGTGCTGCAACTTTGATCGACCTCGGAGGCGAGC
TCATTCCTGGAAGTGGCGATGGACTGGTGTCTCTCGCGGCGAACCTGTCT
TGCGGGTCACTGGCCCCACGCGCCCTATCGAACCCCCTCTTCGACACTCA
GACCACTGCCATGCGCAAGGGAAACTCTCTGTACGCCGTGAATGCCAAGT
TCGGCGTGGCCGCAGAGGATGTCGCCACCACGGCGTACGAGATTGTTCGT
GTCGACCGAGACAGCGGGGAGCTGGCGTGCTAAGTGCACCCTCCAAGAGC
GCTCTTTAGCTGTTCACAG
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protein sequence of EsuBft1418_4a-0001

>EsuBft1418_4 ID=EsuBft1418_4|Name=EsuBft1418_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=160bp
MIHVVIGRIDPNHRSCNVRHPFTVEFANSTKLHILLIVPILSGNSSQATD
DGSALIIVNSESQQLFAVDPDTGAATLIDLGGELIPGSGDGLVSLAANLS
CGSLAPRALSNPLFDTQTTAMRKGNSLYAVNAKFGVAAEDVATTAYEIVR
VDRDSGELAC
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mRNA from alignment at Scaffold_242:1175027..1176691-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1418_4a-0001 ID=EsuBft1418_4a-0001|Name=EsuBft1418_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1665bp|location=Sequence derived from alignment at Scaffold_242:1175027..1176691- (Ectocarpus subulatus male Bft15b)
ATGATACATGTAGTAATTGGGCGAATCGATCCCAACCATCGAAGTTGCAA
CGTACGCCACCCATTCACGGTGGAATTTGCAAATTCCACGAAGTTACATA
TCCTCCTGATCGTTCCCATTCTTTCTGGAAACTCCTCTCAGGCCACAGAC
GACGGCAGCGCGCTAATCATTGTCAACTCGGAATCGCAGCAGCTGTTCGC
CGTCGACCCCGACACCGGTGCTGCAACTTTGATCGACCTCGGAGGCGAGC
TCATTCCTGGAAGTGGCGATGGACTGGTGAGGGGATCCATGTTGCTTATT
TGCTTTGGAGTGTTTAGGTGTCTGCTTGATGCGGCCCGGGAACAAAGTAA
TCAGTCTGAAACGTCTAGAAGCAGGCACACCGCATGCTGTCGCCATGAGC
CCGAATGAATTACGAATTCTTCCCGATTCACCTGCTGCGCACGATTGGTT
TAGGTGCTGCGAAAAAATACACTCTGGGTCGTCGACAACGCACTCGAACA
AATTTTGGAGGTGAGCTTTCATCTGCCGACCTACTCTGTAGTAGCTGCAG
CTTTTTTGCAACATTCCCAAGTACGTCGTCTTAACCCTGTAGACGTTCAG
TACGAACGACGGCGATTTCGGGCGGAAATATTATTGGCATCGAGGCTTTT
CACTCCGCTCTATGTATACATGTACCAACCTTCATTTCGCAGGTGGCACA
CATTCCACCGACTCCCGCCCTTCACGAAGTTGAAAACACTCCCACCCTTT
CCACGGTGGCGGTGTCCGCAGCCGTTTGCATCTCTCTTTGGCTTGGAATA
CCAACTTCGCAGTCATCCTGTTGTAGTTGTAGTTGTTGTTGTCGTATTGA
TTTGGATCGAAGGGCGGGCGGACTGGGATATGTAAGTTTCGTTGCAGTTC
GCTCAGACGTTGTCGCTCACTTGTGTTATTTTACCGGTGCACTACTAGGC
TTGTACCTGAAGCCCGCGACTGGGACAAGCTGAAGCTCGCTGTTGTAGAA
ACTGCAGCAAATGTGCATGAGCTACTATACAGCAGTTGTGTAGATTTGAA
GGGGGCAAGATGACGCTGGATTCCTGGACCACAAAGTCACATGCGCCTCA
GCCCTCCGCAGCTTACGGTCAACTTGCATCAGCTGGGAAATGCTGTCATT
CTCATGACGAATTGGGGTGGGTTTCGTTAGCGAAGGTGCATGATTTGGGT
GACGTTTTCCCAGAACGAGTTCAGGTGGTGATAACTGCCTTGTGACCAAG
TAGCTTACGAGGCGGATCTCTTTTTGCCTTCATATGTTGCAAGGAAGTGG
TCCACGCCCTCTTCGATCCGAAAGGGCAACAATACGCTCGATTTGCACGC
ACGCTCTACATAGCAACCCACAAACAGCTTCTCTCGCTGCCTCCCTTTTT
TCGGTTGCGTGTGCCTAAACAGGTGTCTCTCGCGGCGAACCTGTCTTGCG
GGTCACTGGCCCCACGCGCCCTATCGAACCCCCTCTTCGACACTCAGACC
ACTGCCATGCGCAAGGGAAACTCTCTGTACGCCGTGAATGCCAAGTTCGG
CGTGGCCGCAGAGGATGTCGCCACCACGGCGTACGAGATTGTTCGTGTCG
ACCGAGACAGCGGGGAGCTGGCGTGCTAAGTGCACCCTCCAAGAGCGCTC
TTTAGCTGTTCACAG
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Coding sequence (CDS) from alignment at Scaffold_242:1175027..1176691-

>EsuBft1418_4a-0001 ID=EsuBft1418_4a-0001|Name=EsuBft1418_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=483bp|location=Sequence derived from alignment at Scaffold_242:1175027..1176691- (Ectocarpus subulatus male Bft15b)
ATGATACATGTAGTAATTGGGCGAATCGATCCCAACCATCGAAGTTGCAA
CGTACGCCACCCATTCACGGTGGAATTTGCAAATTCCACGAAGTTACATA
TCCTCCTGATCGTTCCCATTCTTTCTGGAAACTCCTCTCAGGCCACAGAC
GACGGCAGCGCGCTAATCATTGTCAACTCGGAATCGCAGCAGCTGTTCGC
CGTCGACCCCGACACCGGTGCTGCAACTTTGATCGACCTCGGAGGCGAGC
TCATTCCTGGAAGTGGCGATGGACTGGTGTCTCTCGCGGCGAACCTGTCT
TGCGGGTCACTGGCCCCACGCGCCCTATCGAACCCCCTCTTCGACACTCA
GACCACTGCCATGCGCAAGGGAAACTCTCTGTACGCCGTGAATGCCAAGT
TCGGCGTGGCCGCAGAGGATGTCGCCACCACGGCGTACGAGATTGTTCGT
GTCGACCGAGACAGCGGGGAGCTGGCGTGCTAA
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