EsuBft1418_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1418_3a-0001
Unique NameEsuBft1418_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:1166530..1169884 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1418_3
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length218
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1418_3aEsuBft1418_3aEctocarpus subulatus male Bft15bgeneScaffold_242 1166530..1169884 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1418_3a-0001EsuBft1418_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 1166530..1168316 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1418_3a-0001-exonagat-exon-57472Ectocarpus subulatus male Bft15bexonScaffold_242 1166530..1166564 +
EsuBft1418_3a-0001-exonagat-exon-57471Ectocarpus subulatus male Bft15bexonScaffold_242 1166878..1167270 +
EsuBft1418_3a-0001-exonagat-exon-57473Ectocarpus subulatus male Bft15bexonScaffold_242 1167695..1167840 +
EsuBft1418_3a-0001-exonEsuBft1418_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 1168273..1169884 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1418_3a-0001-cdsEsuBft1418_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 1166530..1166564 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1418_3a-0001-exonagat-three_prime_utr-3719Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 1168317..1169884 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1418_3a-0001 ID=EsuBft1418_3a-0001|Name=EsuBft1418_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2186bp|location=Sequence derived from alignment at Scaffold_242:1166530..1169884+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACACCTTAGTACTTCACCTGTTCTGCATCTGCGAGAACGGCGCAGC
CGCCTCCAATCCGGCCAAGAGGCGAAAGCGCTCCTCCGACGGCGCCGTCG
CCGGCGATGGTGGTGGTGGGGTTAGCAGTAGCGGCGAGGCAGCCGATGGC
GGTGGGGCTAACGTGGGCGACGAGGTAGAGGAAGGGTTCGAAGACATTCC
ACTCTCTTCCGCGGGGAAGGGGAAGAAGAAGAAGAAGGGGAAGGGGAAGC
CGGGCAAGAGCAAGCGCGGCGGGGGCAGCGGCAGCAGCACTAGCAGCAGC
GTCGGCGATAGCGGCGGCGACCAAGGCGCTGGCGCGGGGATGGAAAAGTG
GGCGGAGACGGAGGCCAAGGAGCGGGAGAGGGAGGCCCGAAAGGAGGAAG
TGGTGGCGGGCCACATGGTTCGAGAGAGGCGGCTGCTGTCTCTGCACAGA
CTGGTGGCGTCCCTGGACCAGTTGGACCGGATGATCGCTTGGGTGGACGA
CGTGGAGGAAGACGTCAACGCAAAGCAAGCGGGAGTGCTCGGTCCGGGAA
TGCCGATGAGCGTGATAGGCTTTGAAACAACGAAAATGTTCGAGCCGGAC
TGGACTGGACTTTTGTGATGGCTCACTCATTCACTTTGAGACGTGCTTCT
TTCACTTGAACCTGCCGAGTGTAGGTGGCGGCGCGTACACGCACGCCAAA
CCTTGATTCTCCCGCGATCTTGTTTTCCTTCGGCCGCTTCCGTCGCTTCC
CTCCCTACCCACTGTTGCCTTTTCCGTCCGCCTCGTTGTTTCCTCCCCGT
GTCTTTTCGGACGCAGTTCTTCTGCTATGGACTCTGGGGGTCGACCCGGG
ATGCTTGCTGTTATTTTTCCCGGAGCGTTTCCGTAACGCATATACTGCTT
CTGCTTCGATTGTTCGCGGGATGTCCCATATTGACTTCACGGAATTCCTG
TACGCGATCCGCAGCCAACATCGCGCTAACCGTCCCGAAATGACTTGCGG
GTGTGTCGTTGGCATGCCGTGGTTCGTGTTTTAAGGTCCCCCCTGTCCGT
GTTTCCCCGGTGGTTCTTTCCACGGTTTTTCGGAGTGCGAATACCGTCGT
CTTTTTTTTTTTCGGGTTTTCGGTGTGTGTCATCGAAGCGTCAGCGAGCG
ATGTGTGCGATCGCATTGAGCGCCCGGAGGATAATGATGGGGGGGGGTTA
AATGCCAACCCGGAGGAACTAGCGCGTAGCACAGGGCGCAAGCAACACCA
ACCGGCTGGGGGGCGTGTATTGCGATGGACCAGTATTCTGATAAGAGTGA
ATTGAACGTGCTCACACATGGCAGTATGACCAGGTAGGTGAGATGCACCT
CGATGGGCATGGCGTTCTCGGGTGTGGCTTACTCGTGTCCAAGGAGCGTG
TGCAACGGTAGGGCTCCTCATGTCACGCCCCCCCCCTTATTCGGAGGAGA
AAGTTTTAGACCTTATGCTTCGCCCTTCCACAACGAGGACGCAGTTTGTC
CGACTCGAAACGAACAGGAGCAGTGTCAGAAACGCGCAGGTGAAGCACTG
TTTGTGTTTTGGGGCGGTTGTTTGGTCCCAAACCTGTTTTTGGAAAAGCC
TGTGACAACGTCATTCCATCACGACATTGACGGTTACTTCCTTCCCGCCG
CAGCATAAACCACCCGCAAGAGGGTCGCTAGAGGAGAATGGAACACGGGG
TGATGCTTGTAGTCATCTGCGAAAGGTCAGGCAGGCCAAGCATTGTGTGG
CGTTGTCGTAGATGAAGGCAGCGAGGCGAATTGTGGCGATGGCTTCGCGC
GGGGTCTCGTCAGCGTAGTCGAACTTAGGGCGTGTTGAGGAAGCAAGTAG
TCAAACGTTGCTACATAGATGGGCCCTGTGTTTTGCATGCATGGGCTACG
GTTGACCGGAGAAGCCGGCATGAGGCGTTCTAATCTCGGGCGATATTTTT
TTTTGTTATTTACGAACAAGCAAACTGTAGTGGTGCTTTGGAGTCAAGAG
GGCGTGCTTGAGCTGCAAGTTTGGGACTTGCTTCTGCGTAGCATATAATG
GGGCCCCGTGTCGTGGTCGGGGTAATAGGTTGGGTATTTGAATGAAATGA
ACGCGTTAGTTGGCTATCGACTTGCCGGGCACGTGTAGCGGTACAAGCAA
TACAGCAGGGGGCAACAATATCATACACAATGCACC
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protein sequence of EsuBft1418_3a-0001

>EsuBft1418_3 ID=EsuBft1418_3|Name=EsuBft1418_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=205bp
MDTLVLHLFCICENGAAASNPAKRRKRSSDGAVAGDGGGGVSSSGEAADG
GGANVGDEVEEGFEDIPLSSAGKGKKKKKGKGKPGKSKRGGGSGSSTSSS
VGDSGGDQGAGAGMEKWAETEAKEREREARKEEVVAGHMVRERRLLSLHR
LVASLDQLDRMIAWVDDVEEDVNAKQAGVLGPGMPMSVIGFETTKMFEPD
WTGLL
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mRNA from alignment at Scaffold_242:1166530..1169884+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1418_3a-0001 ID=EsuBft1418_3a-0001|Name=EsuBft1418_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3355bp|location=Sequence derived from alignment at Scaffold_242:1166530..1169884+ (Ectocarpus subulatus male Bft15b)
ATGGACACCTTAGTACTTCACCTGTTCTGCATCTGGTAGCCTTCATACTG
TCGTTAACATCTCTTGGTTGTACCTACCGTGTGGTTGTCTTGTGGTGCTT
TGATCGGGGCGACACTGAGTAAGTGCCCTGTTCTGTCTCGGGCGGGCGGC
TTTTTCCCTTTCGTTCAGTTCTGTTCACGGGAACACGTGCCTTGTGGCCC
AGTCTTGATTTGTCTCGGGTGCCACGTTTCTCCGCTCTAAACCAAAACAA
ACGTATACAGCCTGGGGCGAACGTGATCAACGGGCCCGATCACCAGCGGG
AGGGAGCGTAGAAGGTACGGGAGCGTCAGCAGGAGGAGGAGGAGGCAGCG
AGAACGGCGCAGCCGCCTCCAATCCGGCCAAGAGGCGAAAGCGCTCCTCC
GACGGCGCCGTCGCCGGCGATGGTGGTGGTGGGGTTAGCAGTAGCGGCGA
GGCAGCCGATGGCGGTGGGGCTAACGTGGGCGACGAGGTAGAGGAAGGGT
TCGAAGACATTCCACTCTCTTCCGCGGGGAAGGGGAAGAAGAAGAAGAAG
GGGAAGGGGAAGCCGGGCAAGAGCAAGCGCGGCGGGGGCAGCGGCAGCAG
CACTAGCAGCAGCGTCGGCGATAGCGGCGGCGACCAAGGCGCTGGCGCGG
GGATGGAAAAGTGGGCGGAGACGGAGGCCAAGGAGCGGGAGAGGGAGGCC
CGAAAGGAGGAAGTGGTGGCGGGCCACATGGTTCGAGAGAGGTATGTGGA
CGCGCTGCGCGTGACGCNGCGGCGACAAGTGCCGTTCGTACGGGTTGGGG
CACGTGCACACACGCAGGAGGAGACAGACGGGTCCTCCCGGGTTAAGCAC
TGAAACCGCCGTCTTTTCTCATTGGTCAGCTACCTGGCGAGGCCGATGCG
AGAACGACAGACACAACACATGGGTTCCCAGATCATCGCTGTAGAAGCGT
TTTCCGTTTCTTGCCCGCACTGCGGCTGACTGACTTGTTTTCGTTGGTCG
GCTGGTTAGCGCGGTCGGTGCTAGTGGACTCTCCCATAAAAGTCAGTCAT
TCACACTGACATGACGTGTTTTCATTGGTCAGCCGTTTTTTTTGCGCTGT
CGATGCTACAGCAACAATGATAACACGCACACACATGATTCGTGTGCGAC
CGCGCACGTGCGCAGGCGGCTGCTGTCTCTGCACAGACTGGTGGCGTCCC
TGGACCAGTTGGACCGGATGATCGCTTGGGTGGACGACGTGGAGGAAGAC
GTCAACGCAAAGCAAGCGGGAGTGCTCGGTCCGGGAATGCCGATGAGCGT
GATAGGCTTTGGTGAGTCCGCCAATCCGTGCACGCTGCTGGCGCGAGCTG
AAGTGAAACGACTTGTGTCTTGTTGCATGTTTTTGACCCGTGTTCGAGCT
GCTTTCAAGGTGTTGACGAACGTGATGATGCGTAGATGCTTCTTTCACAC
CTATTACCAGGGTCGTGGACGAAATCACGAATACCGTGTGTGTTGTGTTT
TAGTGATTTTTGAAATTGTGGTCAGGCCAACTATGTTTGATCTTTGGTGT
TTAGGGCTTCCTTTTGATGTTGGTTCGACCCACCCCTTCTCTCCCACCTC
TGCCCCTTGGCTGTAACTTCGAATGACACAAGTGCTCCATTTTCTTCAGT
TTCTTGCTGGAAGGGGGTCGTTTTCCGTTTCCGAAATGACTCACGGTGAA
TGGGAATCGTGAGCGTCGGAAATCGAAAAATTCCTGCATGCAGAAACAAC
GAAAATGTTCGAGCCGGACTGGACTGGACTTTTGTGATGGCTCACTCATT
CACTTTGAGACGTGCTTCTTTCACTTGAACCTGCCGAGTGTAGGTGGCGG
CGCGTACACGCACGCCAAACCTTGATTCTCCCGCGATCTTGTTTTCCTTC
GGCCGCTTCCGTCGCTTCCCTCCCTACCCACTGTTGCCTTTTCCGTCCGC
CTCGTTGTTTCCTCCCCGTGTCTTTTCGGACGCAGTTCTTCTGCTATGGA
CTCTGGGGGTCGACCCGGGATGCTTGCTGTTATTTTTCCCGGAGCGTTTC
CGTAACGCATATACTGCTTCTGCTTCGATTGTTCGCGGGATGTCCCATAT
TGACTTCACGGAATTCCTGTACGCGATCCGCAGCCAACATCGCGCTAACC
GTCCCGAAATGACTTGCGGGTGTGTCGTTGGCATGCCGTGGTTCGTGTTT
TAAGGTCCCCCCTGTCCGTGTTTCCCCGGTGGTTCTTTCCACGGTTTTTC
GGAGTGCGAATACCGTCGTCTTTTTTTTTTTCGGGTTTTCGGTGTGTGTC
ATCGAAGCGTCAGCGAGCGATGTGTGCGATCGCATTGAGCGCCCGGAGGA
TAATGATGGGGGGGGGTTAAATGCCAACCCGGAGGAACTAGCGCGTAGCA
CAGGGCGCAAGCAACACCAACCGGCTGGGGGGCGTGTATTGCGATGGACC
AGTATTCTGATAAGAGTGAATTGAACGTGCTCACACATGGCAGTATGACC
AGGTAGGTGAGATGCACCTCGATGGGCATGGCGTTCTCGGGTGTGGCTTA
CTCGTGTCCAAGGAGCGTGTGCAACGGTAGGGCTCCTCATGTCACGCCCC
CCCCCTTATTCGGAGGAGAAAGTTTTAGACCTTATGCTTCGCCCTTCCAC
AACGAGGACGCAGTTTGTCCGACTCGAAACGAACAGGAGCAGTGTCAGAA
ACGCGCAGGTGAAGCACTGTTTGTGTTTTGGGGCGGTTGTTTGGTCCCAA
ACCTGTTTTTGGAAAAGCCTGTGACAACGTCATTCCATCACGACATTGAC
GGTTACTTCCTTCCCGCCGCAGCATAAACCACCCGCAAGAGGGTCGCTAG
AGGAGAATGGAACACGGGGTGATGCTTGTAGTCATCTGCGAAAGGTCAGG
CAGGCCAAGCATTGTGTGGCGTTGTCGTAGATGAAGGCAGCGAGGCGAAT
TGTGGCGATGGCTTCGCGCGGGGTCTCGTCAGCGTAGTCGAACTTAGGGC
GTGTTGAGGAAGCAAGTAGTCAAACGTTGCTACATAGATGGGCCCTGTGT
TTTGCATGCATGGGCTACGGTTGACCGGAGAAGCCGGCATGAGGCGTTCT
AATCTCGGGCGATATTTTTTTTTGTTATTTACGAACAAGCAAACTGTAGT
GGTGCTTTGGAGTCAAGAGGGCGTGCTTGAGCTGCAAGTTTGGGACTTGC
TTCTGCGTAGCATATAATGGGGCCCCGTGTCGTGGTCGGGGTAATAGGTT
GGGTATTTGAATGAAATGAACGCGTTAGTTGGCTATCGACTTGCCGGGCA
CGTGTAGCGGTACAAGCAATACAGCAGGGGGCAACAATATCATACACAAT
GCACC
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Coding sequence (CDS) from alignment at Scaffold_242:1166530..1169884+

>EsuBft1418_3a-0001 ID=EsuBft1418_3a-0001|Name=EsuBft1418_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=618bp|location=Sequence derived from alignment at Scaffold_242:1166530..1169884+ (Ectocarpus subulatus male Bft15b)
ATGGACACCTTAGTACTTCACCTGTTCTGCATCTGCGAGAACGGCGCAGC
CGCCTCCAATCCGGCCAAGAGGCGAAAGCGCTCCTCCGACGGCGCCGTCG
CCGGCGATGGTGGTGGTGGGGTTAGCAGTAGCGGCGAGGCAGCCGATGGC
GGTGGGGCTAACGTGGGCGACGAGGTAGAGGAAGGGTTCGAAGACATTCC
ACTCTCTTCCGCGGGGAAGGGGAAGAAGAAGAAGAAGGGGAAGGGGAAGC
CGGGCAAGAGCAAGCGCGGCGGGGGCAGCGGCAGCAGCACTAGCAGCAGC
GTCGGCGATAGCGGCGGCGACCAAGGCGCTGGCGCGGGGATGGAAAAGTG
GGCGGAGACGGAGGCCAAGGAGCGGGAGAGGGAGGCCCGAAAGGAGGAAG
TGGTGGCGGGCCACATGGTTCGAGAGAGGCGGCTGCTGTCTCTGCACAGA
CTGGTGGCGTCCCTGGACCAGTTGGACCGGATGATCGCTTGGGTGGACGA
CGTGGAGGAAGACGTCAACGCAAAGCAAGCGGGAGTGCTCGGTCCGGGAA
TGCCGATGAGCGTGATAGGCTTTGAAACAACGAAAATGTTCGAGCCGGAC
TGGACTGGACTTTTGTGA
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