EsuBft1418_14a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1418_14a-0001
Unique NameEsuBft1418_14a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:1245614..1246185 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1418_14
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSignalP-TM
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length57
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1418_14aEsuBft1418_14aEctocarpus subulatus male Bft15bgeneScaffold_242 1245614..1246185 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1418_14a-0001-exonEsuBft1418_14a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 1245614..1246185 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1418_14a-0001-cdsEsuBft1418_14a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 1245614..1246018 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1418_14a-0001-exonagat-five_prime_utr-2450Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_242 1246019..1246185 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1418_14a-0001EsuBft1418_14Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 1245614..1246018 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1418_14a-0001 ID=EsuBft1418_14a-0001|Name=EsuBft1418_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=572bp|location=Sequence derived from alignment at Scaffold_242:1245614..1246185- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCGGGGCTGTAACCCGGGGCTGTAGGAGAAACGTCCGTGAGACAACAGA
TTATCGCAGACACCATCTTGCGGGGTGATCGCCTCGCTAATAGGCTGACG
CAGACTTTCCGGGCATCGGCCCCCGCGATTGTGTTGATCATGTTTACTGA
CATTCTTCCCGACGCCCATGGGGTCAAAAATGAGCTGTTTTCGGCGGACT
CGGCGCGCATTAAGAAGTAGTACGGTCAAGTTGTCGGCGTTAGCAGCACC
GTTGGAGGGAGTGGTCTCGGGAATACGTTCGATGGGTGTGACGCACGCCC
TGCCGGGACCGGCCATGACTAAACCGTTTTCTCACGTAGCCATCGGCGGC
GGGGCTTTTGGCCTCGGCAATCACCCTCTCGGGGTACCGCCGCAACACCG
AACGATAGCGGCCGGGTTGGGGGGCTACGCCGCGCGCCCCTCGACCACCT
CGCCGGCAGCCGAGGTCGCACATGTCCCAGAGTGCCGCCCAGGCCGTCAC
GATGGGAGCCAGGGCAGGGCACTATACTCCGTGGCCGTCCGGTCGGACCG
GGGGGGGTCGGGGGGCGTGTAG
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protein sequence of EsuBft1418_14a-0001

>EsuBft1418_14 ID=EsuBft1418_14|Name=EsuBft1418_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=134bp
MGSKMSCFRRTRRALRSSTVKLSALAAPLEGVVSGIRSMGVTHALPGPAM
TKPFSHVAIGGGAFGLGNHPLGVPPQHRTIAAGLGGYAARPSTTSPAAEV
AHVPECRPGRHDGSQGRALYSVAVRSDRGGSGGV
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mRNA from alignment at Scaffold_242:1245614..1246185-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1418_14a-0001 ID=EsuBft1418_14a-0001|Name=EsuBft1418_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=572bp|location=Sequence derived from alignment at Scaffold_242:1245614..1246185- (Ectocarpus subulatus male Bft15b)
CCCGGGGCTGTAACCCGGGGCTGTAGGAGAAACGTCCGTGAGACAACAGA
TTATCGCAGACACCATCTTGCGGGGTGATCGCCTCGCTAATAGGCTGACG
CAGACTTTCCGGGCATCGGCCCCCGCGATTGTGTTGATCATGTTTACTGA
CATTCTTCCCGACGCCCATGGGGTCAAAAATGAGCTGTTTTCGGCGGACT
CGGCGCGCATTAAGAAGTAGTACGGTCAAGTTGTCGGCGTTAGCAGCACC
GTTGGAGGGAGTGGTCTCGGGAATACGTTCGATGGGTGTGACGCACGCCC
TGCCGGGACCGGCCATGACTAAACCGTTTTCTCACGTAGCCATCGGCGGC
GGGGCTTTTGGCCTCGGCAATCACCCTCTCGGGGTACCGCCGCAACACCG
AACGATAGCGGCCGGGTTGGGGGGCTACGCCGCGCGCCCCTCGACCACCT
CGCCGGCAGCCGAGGTCGCACATGTCCCAGAGTGCCGCCCAGGCCGTCAC
GATGGGAGCCAGGGCAGGGCACTATACTCCGTGGCCGTCCGGTCGGACCG
GGGGGGGTCGGGGGGCGTGTAG
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Coding sequence (CDS) from alignment at Scaffold_242:1245614..1246185-

>EsuBft1418_14a-0001 ID=EsuBft1418_14a-0001|Name=EsuBft1418_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=405bp|location=Sequence derived from alignment at Scaffold_242:1245614..1246185- (Ectocarpus subulatus male Bft15b)
ATGGGGTCAAAAATGAGCTGTTTTCGGCGGACTCGGCGCGCATTAAGAAG
TAGTACGGTCAAGTTGTCGGCGTTAGCAGCACCGTTGGAGGGAGTGGTCT
CGGGAATACGTTCGATGGGTGTGACGCACGCCCTGCCGGGACCGGCCATG
ACTAAACCGTTTTCTCACGTAGCCATCGGCGGCGGGGCTTTTGGCCTCGG
CAATCACCCTCTCGGGGTACCGCCGCAACACCGAACGATAGCGGCCGGGT
TGGGGGGCTACGCCGCGCGCCCCTCGACCACCTCGCCGGCAGCCGAGGTC
GCACATGTCCCAGAGTGCCGCCCAGGCCGTCACGATGGGAGCCAGGGCAG
GGCACTATACTCCGTGGCCGTCCGGTCGGACCGGGGGGGGTCGGGGGGCG
TGTAG
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