EsuBft1418_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1418_10a-0001
Unique Name	EsuBft1418_10a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_242	contig	Scaffold_242:1204778..1206304 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1418_10
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	152
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1418_10a	EsuBft1418_10a	Ectocarpus subulatus male Bft15b	gene	Scaffold_242 1204778..1206304 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1418_10a-0001-exon	EsuBft1418_10a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 1204778..1206304 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1418_10a-0001-exon	agat-three_prime_utr-3716	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_242 1204778..1206001 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1418_10a-0001-cds	EsuBft1418_10a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_242 1206002..1206304 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1418_10a-0001	EsuBft1418_10	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_242 1206002..1206304 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_242:1204778..1206304-
coding sequence from alignment at Scaffold_242:1204778..1206304-

spliced messenger RNA

>EsuBft1418_10a-0001 ID=EsuBft1418_10a-0001|Name=EsuBft1418_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1527bp|location=Sequence derived from alignment at Scaffold_242:1204778..1206304- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGACGAAAAGGAAGGGGGGAAATGGAAAGAGAGCGCCAAGGACCC
GGAGGTGTGGTACAACAAGGTCGAGGACGGGGCGGCATGGTTCATGAGGA
AATGGCACAGGCAGGGGGCGGAAGCGTCCGCGAAGCGCCAGCGCGCGAGG
GAAGCAGAAGCAGAGAGTACGGCCACGTCAGGACCGAAGAGAATGAGAGC
CGGGGAAGCGGCGGTGGGGGGGAAGAAACGGCGACGGGGCACTGCTGTAG
AAGCGAGTAGGGCGGCCGAGGCAGCACTTGTGGCGAACCATGTACCCGGC
TGATGTTGTTGCGCCCTGTTTCCCTCCCTGCTGTATGCTATACTCCGTTA
TGTATGTCCTTTGTATTGCCTTCGGCCTCTGTGCTGTGTTTCTTTTCTTC
AAGGCCTCCCTGCCTACTCTGCTGTGTTGGGTACCTTGATCTCGCTTTTG
CTGTTGCCTTTGTTTTTGTACGTCTGGCTGTCTGCCCATCTGCCGCCTCT
TTGTCCTGTTTGCTCCGTTACTCCCATGCCCCGGTGCGTCGTGCCTGGTG
CTGGTACGTTACCCTCTGATAATTTCTTTAGGCGGGTGTGGGAAGCGTCC
TCCTCTATTTTAGTTTTTTTTTTTTTGATCGGTTTCCGAGGGCTCTTTTC
TCGAACGGTCGGTGCGATACCTGTGCTTTTCTTTCTATCATTTTGTTTTC
TTGTTCCGAGTGGTTTGTACCCAATTTTTGTTTTGTTTCCCCGCGGCGTC
GTGTGTGCCGGATTTTGAGACCACGGGCTCCCCATTTTTGTGGACTATAG
AGCTAATGTGAGAAACAACAACAACAACTACTACCACTGTGTGCGAAAGA
GATCAATCCTTACATCAACGACCACGTGCGTTGCTAGTTCGTGGTGACCG
TTGTACTGTAGGAGATCCTATTCTACCGAGCAAGGAAAAATTGTGTAGAC
TATCATGTACAAACATTCGCGGTGGATGCCTGCTACGTAGACAAAGGGAC
CTGCACCTCCTTCCCGTGAGTGTCATGAGTTACCGCTCGTTGAATGCACT
GCTGTCGAGAGGAGTGGGTCTGATGAGTCGATGAAATATTCATTTTTTCC
TCAGTTTGCAGCAAAACAATAGTGTACTTTGGAAGACAAAATTCTTCGAG
GAAGACTGTGTGTGATTTTTCGTCCTATCTATGTATTATGGCGACAGTCC
CCCCATTTTTCGTGGTGGGACGTGTACGACACTTTTCAGCGTATGTAGGG
TACTACACTTTTCAGTGTATTTTTTCGAACAACTTCGACCATCCAGGGTC
AGACAGGAGGGGGGTAAACACAAGGGCTTTTTCTTCTTATTTCTTTTCAT
ACCCCACCTTCCTCCTGCGGTGCGTGCTGAATTTTTATTTTTATCGCGAG
AAGGGTCCAGCCGTCCCTTTCCCTCGTCAACGGTGCTAACGTCGAAGTTT
GGTACTCACGAGAGCTTGTCAGCTATATTTCGCTTCCACCCGCACATTTC
GTAATTATTTTCACCCCGTGGGGATTC

protein sequence of EsuBft1418_10a-0001

>EsuBft1418_10 ID=EsuBft1418_10|Name=EsuBft1418_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=100bp
MGDEKEGGKWKESAKDPEVWYNKVEDGAAWFMRKWHRQGAEASAKRQRAR
EAEAESTATSGPKRMRAGEAAVGGKKRRRGTAVEASRAAEAALVANHVPG

mRNA from alignment at Scaffold_242:1204778..1206304-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1418_10a-0001 ID=EsuBft1418_10a-0001|Name=EsuBft1418_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1527bp|location=Sequence derived from alignment at Scaffold_242:1204778..1206304- (Ectocarpus subulatus male Bft15b)
ATGGGAGACGAAAAGGAAGGGGGGAAATGGAAAGAGAGCGCCAAGGACCC
GGAGGTGTGGTACAACAAGGTCGAGGACGGGGCGGCATGGTTCATGAGGA
AATGGCACAGGCAGGGGGCGGAAGCGTCCGCGAAGCGCCAGCGCGCGAGG
GAAGCAGAAGCAGAGAGTACGGCCACGTCAGGACCGAAGAGAATGAGAGC
CGGGGAAGCGGCGGTGGGGGGGAAGAAACGGCGACGGGGCACTGCTGTAG
AAGCGAGTAGGGCGGCCGAGGCAGCACTTGTGGCGAACCATGTACCCGGC
TGATGTTGTTGCGCCCTGTTTCCCTCCCTGCTGTATGCTATACTCCGTTA
TGTATGTCCTTTGTATTGCCTTCGGCCTCTGTGCTGTGTTTCTTTTCTTC
AAGGCCTCCCTGCCTACTCTGCTGTGTTGGGTACCTTGATCTCGCTTTTG
CTGTTGCCTTTGTTTTTGTACGTCTGGCTGTCTGCCCATCTGCCGCCTCT
TTGTCCTGTTTGCTCCGTTACTCCCATGCCCCGGTGCGTCGTGCCTGGTG
CTGGTACGTTACCCTCTGATAATTTCTTTAGGCGGGTGTGGGAAGCGTCC
TCCTCTATTTTAGTTTTTTTTTTTTTGATCGGTTTCCGAGGGCTCTTTTC
TCGAACGGTCGGTGCGATACCTGTGCTTTTCTTTCTATCATTTTGTTTTC
TTGTTCCGAGTGGTTTGTACCCAATTTTTGTTTTGTTTCCCCGCGGCGTC
GTGTGTGCCGGATTTTGAGACCACGGGCTCCCCATTTTTGTGGACTATAG
AGCTAATGTGAGAAACAACAACAACAACTACTACCACTGTGTGCGAAAGA
GATCAATCCTTACATCAACGACCACGTGCGTTGCTAGTTCGTGGTGACCG
TTGTACTGTAGGAGATCCTATTCTACCGAGCAAGGAAAAATTGTGTAGAC
TATCATGTACAAACATTCGCGGTGGATGCCTGCTACGTAGACAAAGGGAC
CTGCACCTCCTTCCCGTGAGTGTCATGAGTTACCGCTCGTTGAATGCACT
GCTGTCGAGAGGAGTGGGTCTGATGAGTCGATGAAATATTCATTTTTTCC
TCAGTTTGCAGCAAAACAATAGTGTACTTTGGAAGACAAAATTCTTCGAG
GAAGACTGTGTGTGATTTTTCGTCCTATCTATGTATTATGGCGACAGTCC
CCCCATTTTTCGTGGTGGGACGTGTACGACACTTTTCAGCGTATGTAGGG
TACTACACTTTTCAGTGTATTTTTTCGAACAACTTCGACCATCCAGGGTC
AGACAGGAGGGGGGTAAACACAAGGGCTTTTTCTTCTTATTTCTTTTCAT
ACCCCACCTTCCTCCTGCGGTGCGTGCTGAATTTTTATTTTTATCGCGAG
AAGGGTCCAGCCGTCCCTTTCCCTCGTCAACGGTGCTAACGTCGAAGTTT
GGTACTCACGAGAGCTTGTCAGCTATATTTCGCTTCCACCCGCACATTTC
GTAATTATTTTCACCCCGTGGGGATTC

Coding sequence (CDS) from alignment at Scaffold_242:1204778..1206304-

>EsuBft1418_10a-0001 ID=EsuBft1418_10a-0001|Name=EsuBft1418_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=303bp|location=Sequence derived from alignment at Scaffold_242:1204778..1206304- (Ectocarpus subulatus male Bft15b)
ATGGGAGACGAAAAGGAAGGGGGGAAATGGAAAGAGAGCGCCAAGGACCC
GGAGGTGTGGTACAACAAGGTCGAGGACGGGGCGGCATGGTTCATGAGGA
AATGGCACAGGCAGGGGGCGGAAGCGTCCGCGAAGCGCCAGCGCGCGAGG
GAAGCAGAAGCAGAGAGTACGGCCACGTCAGGACCGAAGAGAATGAGAGC
CGGGGAAGCGGCGGTGGGGGGGAAGAAACGGCGACGGGGCACTGCTGTAG
AAGCGAGTAGGGCGGCCGAGGCAGCACTTGTGGCGAACCATGTACCCGGC
TGA