EsuBft1410_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1410_3a-0001
Unique Name	EsuBft1410_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_128	contig	Scaffold_128:76900..79171 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1410_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	175
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1410_3a	EsuBft1410_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_128 76900..79171 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1410_3a-0001	EsuBft1410_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_128 77974..79171 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1410_3a-0001-exon	agat-exon-14796	Ectocarpus subulatus male Bft15b	exon	Scaffold_128 76900..77325 -
EsuBft1410_3a-0001-exon	agat-exon-14795	Ectocarpus subulatus male Bft15b	exon	Scaffold_128 77528..77996 -
EsuBft1410_3a-0001-exon	EsuBft1410_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_128 78313..79171 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1410_3a-0001-exon	agat-three_prime_utr-3671	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_128 76900..77325 -
EsuBft1410_3a-0001-exon	agat-three_prime_utr-3672	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_128 77528..77973 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1410_3a-0001-cds	EsuBft1410_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_128 77974..77996 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_128:76900..79171-
coding sequence from alignment at Scaffold_128:76900..79171-

spliced messenger RNA

>EsuBft1410_3a-0001 ID=EsuBft1410_3a-0001|Name=EsuBft1410_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1754bp|location=Sequence derived from alignment at Scaffold_128:76900..79171- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTAATCTGCCCGAGTCTGAAGATAGCAGCGCCAAGGTTGACTACAA
CTTCTTCAGCTCCTCGGCGGGCGTCGGGGCCACGCTCAACGCCACCGTCG
TTGCCGCCGGCCACGAACGCCCTGAACCCTCCAAGACCGCAGTCTCCAAC
GACTCCGCCTCGTGGTCAAGCGGCCGCCTCACTTCGCCGCCGCTGCCACC
GCCGCAACCAGCGTACGACGACACCCTGTCAATGCCGCTCTCCCCGAGGC
GGTACCATGTGAGCGCCGCAGCTCCCAAGCCTGCTCCAGCCACCGCTGGC
GATCTTACCACTGCCCCCCCGTCGTGCGCTGTCGCGCGCGGTATGTCTGA
AGCGACCGACAAAACGAATCCGTTGTCTCCGTCTACTTCACCTCGTCATG
AGCAGCTGGGTTCGTGTCCAGAGTTTCGCATGACGATGTCGTCTGGTGCA
GCTGCCACGGTGCCAGCTCCCACCCGCGCTTCTGGTGGTGCGGCGGTCGG
TGCCGGGGGTGTGGTGCCCCCGCCCCTGCCCCATCGGGCGATCGTCCCTC
CTGCTTTGGAGAAAACGGATGAGCGTGGTGTAGCAGATGCGACCAAGGAC
AGTGGCGGCCTCGCTGCCTCGACGGACCAGTCGGACGAGACCCCGAGCAA
CATCGTCCAAGAGGTGGCCGAAGACGTGGCTGAGGGAGTGGCCGACATGA
TGCAGGTCATTCGAGGCGTGTTCGGCAGGGGGGAAAGTGACGACGGCGAT
GATGCCGACCCAACACCACCACCGCCGCAGAAGGCGGTCTACGGTGGTGG
TGGTGACAGTGGCACCCCTGAACAGAAAGATTTTCTTGTTTCCGCAGTCC
TCAGTCGAGGTTCGGCGCTATTCAGGCTTTGAGTATATTATACCTCAATA
GTATAGGTCCGGCACTATTGAGGAGATGTTTGATTTGATGGTGTAGCGCT
CATGCGTCGCGGGGCTAACAGAGTACGAAATGGATTGAATTACAGTAGTG
CTGGGCCCTGTTCTAGCGTGGGTGTGGGCAGGCTGTCCTGCGACCCGCGT
GGTTCCCCCCTGTCGCACACACAGAGATGTAGAAAAATTACTTGCAAGTT
GAATCGTTACTTTCTTCCTGTTTCAGCNATTACAGTAGTGCTGGGCCCTG
TTCTAGCGTGGGTGTGGGCAGGCTGTCCTGCGACCCGCGTGGTTCCCCCC
TGTCGCACACACAGAGATGTAGAAAAATTACTTGCAAGTTGANCCTGTTC
TAGCGTGGGTGTGGGCAGGCTGTCCCGCGACCCGTGTGGTTCCCCCCTGT
CGCACACAGAGATGTAGAAAAATTACTGCTGTAGACAATGTAACCCCGCC
CTCACTACGCCGCGAAAAATTATCTCATGTCTGCCTGGCGCTTCCATCAA
ATTGAGAATCTCAAGCTTCGTGTTGTTGTCTGGCCGCGCACGAGAACCAG
ATCCCTTCTTACTCCCCGCCTTTGCTTTCTTCGGGCGTGCGTTTAGATGG
ATGGTCCCGCCCCAGCACCCTCAGCTGGTGTCGCATTGCGCTTGCCAGCC
TTGGCGACGCACTTGCTGCAGATGCGGTGCTTTTCGTCGTCCTCAAACAT
GCTCCCGCAATTGCCGTGGAGCCGTCCGCCACACCCTCCCTTGCAGACGG
GGCCATGAGGGGCTTGCGGCGTTCTGCTCCTTGATGGCGGCACAGTTCAC
CGTTCGCACAAGGCTTGTTGCGTCCCTGCGTGAGTGAGCTTTCGGGTCTG
CAGC

protein sequence of EsuBft1410_3a-0001

>EsuBft1410_3 ID=EsuBft1410_3|Name=EsuBft1410_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=293bp
MPNLPESEDSSAKVDYNFFSSSAGVGATLNATVVAAGHERPEPSKTAVSN
DSASWSSGRLTSPPLPPPQPAYDDTLSMPLSPRRYHVSAAAPKPAPATAG
DLTTAPPSCAVARGMSEATDKTNPLSPSTSPRHEQLGSCPEFRMTMSSGA
AATVPAPTRASGGAAVGAGGVVPPPLPHRAIVPPALEKTDERGVADATKD
SGGLAASTDQSDETPSNIVQEVAEDVAEGVADMMQVIRGVFGRGESDDGD
DADPTPPPPQKAVYGGGGDSGTPEQKDFLVSAVLSRGSALFRL

mRNA from alignment at Scaffold_128:76900..79171-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1410_3a-0001 ID=EsuBft1410_3a-0001|Name=EsuBft1410_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2272bp|location=Sequence derived from alignment at Scaffold_128:76900..79171- (Ectocarpus subulatus male Bft15b)
ATGCCTAATCTGCCCGAGTCTGAAGATAGCAGCGCCAAGGTTGACTACAA
CTTCTTCAGCTCCTCGGCGGGCGTCGGGGCCACGCTCAACGCCACCGTCG
TTGCCGCCGGCCACGAACGCCCTGAACCCTCCAAGACCGCAGTCTCCAAC
GACTCCGCCTCGTGGTCAAGCGGCCGCCTCACTTCGCCGCCGCTGCCACC
GCCGCAACCAGCGTACGACGACACCCTGTCAATGCCGCTCTCCCCGAGGC
GGTACCATGTGAGCGCCGCAGCTCCCAAGCCTGCTCCAGCCACCGCTGGC
GATCTTACCACTGCCCCCCCGTCGTGCGCTGTCGCGCGCGGTATGTCTGA
AGCGACCGACAAAACGAATCCGTTGTCTCCGTCTACTTCACCTCGTCATG
AGCAGCTGGGTTCGTGTCCAGAGTTTCGCATGACGATGTCGTCTGGTGCA
GCTGCCACGGTGCCAGCTCCCACCCGCGCTTCTGGTGGTGCGGCGGTCGG
TGCCGGGGGTGTGGTGCCCCCGCCCCTGCCCCATCGGGCGATCGTCCCTC
CTGCTTTGGAGAAAACGGATGAGCGTGGTGTAGCAGATGCGACCAAGGAC
AGTGGCGGCCTCGCTGCCTCGACGGACCAGTCGGACGAGACCCCGAGCAA
CATCGTCCAAGAGGTGGCCGAAGACGTGGCTGAGGGAGTGGCCGACATGA
TGCAGGTCATTCGAGGCGTGTTCGGCAGGGGGGAAAGTGACGACGGCGAT
GATGCCGACCCAACACCACCACCGCCGCAGAAGGCGGTCTACGGTGGTGG
TGGTGACAGTGGCACCCCTGAACAGAAAGATTTTCTTGTTTCCGCAGTCC
TCAGTCGAGGTGAGGCATTAGCGCTGCCGCATGGCCTGTTGTGCTTGGCT
GGCGGCAGCGCTGGTAGAGAGCGAGAGCACCTCGTACGATATTCTTGCAA
CGTCACCCCACTCCCAGCCTCGCCAGGAGGAAACTATGTTTTGCTATATA
ACCCCATCGACGTTCCCTCGTCCCGTTTCCCCCTGTTCCTTCTAAAGTGG
TGGCAAAAGCTCCCATCCGTCGTGATACAGTACTGGGCCCTCTATAGTGC
AGGGGTGTGTCCAGAAATTTCACCTGCACTATAGCGGGCACCTGCACTAT
TCAGAATAGTGCGTCAATAGCGCAGGTTCGGCGCTATTCAGGCTTTGAGT
ATATTATACCTCAATAGTATAGGTCCGGCACTATTGAGGAGATGTTTGAT
TTGATGGTGTAGCGCTCATGCGTCGCGGGGCTAACAGAGTACGAAATGGA
TTGAATTACAGTAGTGCTGGGCCCTGTTCTAGCGTGGGTGTGGGCAGGCT
GTCCTGCGACCCGCGTGGTTCCCCCCTGTCGCACACACAGAGATGTAGAA
AAATTACTTGCAAGTTGAATCGTTACTTTCTTCCTGTTTCAGCNATTACA
GTAGTGCTGGGCCCTGTTCTAGCGTGGGTGTGGGCAGGCTGTCCTGCGAC
CCGCGTGGTTCCCCCCTGTCGCACACACAGAGATGTAGAAAAATTACTTG
CAAGTTGANCCTGTTCTAGCGTGGGTGTGGGCAGGCTGTCCCGCGACCCG
TGTGGTTCCCCCCTGTCGCACACAGAGATGTAGAAAAATTACTGGTAAGT
TGAATCGTTACTTTCTTCTTGTCTCAGCACTCGTACTACTGCACACCGTG
AACTGTCGCATGAACCAATCCTTCAACATTAATACTTAGTGGACGAAGCT
ATATCTCAGTCCTCGCCGCCCTCGTTCGATGTTGCAAGATAAAAAAAAAA
ACACGCCAGGACCCGCACTACAAGAAAACAACCACTACTTCAACAGCTGT
AGACAATGTAACCCCGCCCTCACTACGCCGCGAAAAATTATCTCATGTCT
GCCTGGCGCTTCCATCAAATTGAGAATCTCAAGCTTCGTGTTGTTGTCTG
GCCGCGCACGAGAACCAGATCCCTTCTTACTCCCCGCCTTTGCTTTCTTC
GGGCGTGCGTTTAGATGGATGGTCCCGCCCCAGCACCCTCAGCTGGTGTC
GCATTGCGCTTGCCAGCCTTGGCGACGCACTTGCTGCAGATGCGGTGCTT
TTCGTCGTCCTCAAACATGCTCCCGCAATTGCCGTGGAGCCGTCCGCCAC
ACCCTCCCTTGCAGACGGGGCCATGAGGGGCTTGCGGCGTTCTGCTCCTT
GATGGCGGCACAGTTCACCGTTCGCACAAGGCTTGTTGCGTCCCTGCGTG
AGTGAGCTTTCGGGTCTGCAGC

Coding sequence (CDS) from alignment at Scaffold_128:76900..79171-

>EsuBft1410_3a-0001 ID=EsuBft1410_3a-0001|Name=EsuBft1410_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=882bp|location=Sequence derived from alignment at Scaffold_128:76900..79171- (Ectocarpus subulatus male Bft15b)
ATGCCTAATCTGCCCGAGTCTGAAGATAGCAGCGCCAAGGTTGACTACAA
CTTCTTCAGCTCCTCGGCGGGCGTCGGGGCCACGCTCAACGCCACCGTCG
TTGCCGCCGGCCACGAACGCCCTGAACCCTCCAAGACCGCAGTCTCCAAC
GACTCCGCCTCGTGGTCAAGCGGCCGCCTCACTTCGCCGCCGCTGCCACC
GCCGCAACCAGCGTACGACGACACCCTGTCAATGCCGCTCTCCCCGAGGC
GGTACCATGTGAGCGCCGCAGCTCCCAAGCCTGCTCCAGCCACCGCTGGC
GATCTTACCACTGCCCCCCCGTCGTGCGCTGTCGCGCGCGGTATGTCTGA
AGCGACCGACAAAACGAATCCGTTGTCTCCGTCTACTTCACCTCGTCATG
AGCAGCTGGGTTCGTGTCCAGAGTTTCGCATGACGATGTCGTCTGGTGCA
GCTGCCACGGTGCCAGCTCCCACCCGCGCTTCTGGTGGTGCGGCGGTCGG
TGCCGGGGGTGTGGTGCCCCCGCCCCTGCCCCATCGGGCGATCGTCCCTC
CTGCTTTGGAGAAAACGGATGAGCGTGGTGTAGCAGATGCGACCAAGGAC
AGTGGCGGCCTCGCTGCCTCGACGGACCAGTCGGACGAGACCCCGAGCAA
CATCGTCCAAGAGGTGGCCGAAGACGTGGCTGAGGGAGTGGCCGACATGA
TGCAGGTCATTCGAGGCGTGTTCGGCAGGGGGGAAAGTGACGACGGCGAT
GATGCCGACCCAACACCACCACCGCCGCAGAAGGCGGTCTACGGTGGTGG
TGGTGACAGTGGCACCCCTGAACAGAAAGATTTTCTTGTTTCCGCAGTCC
TCAGTCGAGGTTCGGCGCTATTCAGGCTTTGA