EsuBft1408_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1408_6a-0001
Unique NameEsuBft1408_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_246contigScaffold_246:19485..20048 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1408_6
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length38
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1408_6aEsuBft1408_6aEctocarpus subulatus male Bft15bgeneScaffold_246 19485..20048 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1408_6a-0001-exonagat-exon-78997Ectocarpus subulatus male Bft15bexonScaffold_246 19485..19739 -
EsuBft1408_6a-0001-exonEsuBft1408_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_246 19923..20048 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1408_6a-0001-exonagat-three_prime_utr-3649Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_246 19485..19646 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1408_6a-0001-cdsEsuBft1408_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_246 19647..19739 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1408_6a-0001EsuBft1408_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_246 19647..20048 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1408_6a-0001 ID=EsuBft1408_6a-0001|Name=EsuBft1408_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=381bp|location=Sequence derived from alignment at Scaffold_246:19485..20048- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCATGCAACGGTAGTGCCTCTATCACCTCCGCCTGGAGCAGGCGACT
CTTGAGTCGGAATGGTGCTCTCGGCGTGTCGAAGATCTCACAGCCGTATC
ACTTGACGCACGCCCACGCTGTTCTGCCCGTGGTCACGAAAGTGCTAGAG
CCATCTGAGGATCTAAAGAACACGCACACATATAACGAGAAAAAGGTGTC
CAAGAGCCCGAAGAGGTAGACTACACCTAAAAATCCCTGCAGCACCGCCG
TATGCGTGCCCAAAAACTGAACTGCACGTCCGTCCCACCGTTCGACTACA
ATAGCATCACCCCCTCCCTGTCCCACTCNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
back to top

protein sequence of EsuBft1408_6a-0001

>EsuBft1408_6 ID=EsuBft1408_6|Name=EsuBft1408_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=72bp
MSCNGSASITSAWSRRLLSRNGALGVSKISQPYHLTHAHAVLPVVTKVLE
PSEDLKNTHTYNEKKVSKSPKR
back to top

mRNA from alignment at Scaffold_246:19485..20048-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1408_6a-0001 ID=EsuBft1408_6a-0001|Name=EsuBft1408_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=564bp|location=Sequence derived from alignment at Scaffold_246:19485..20048- (Ectocarpus subulatus male Bft15b)
ATGTCATGCAACGGTAGTGCCTCTATCACCTCCGCCTGGAGCAGGCGACT
CTTGAGTCGGAATGGTGCTCTCGGCGTGTCGAAGATCTCACAGCCGTATC
ACTTGACGCACGCCCACGCTGTTCTGGTAAGTTCTCTGCCGGGTGAGGTT
GCTATGATCGTTGACGAGGCCACCTAGGTGCCAGAACTCAGCAGTCTGGA
CGTACCTGGGTATTTGACGAGTATTGATGTAGGGGTGCCCCGTTGTTGTT
GTCTTCACATTAAACCGTATGTCAATTGCTAAATGCCAAAATCTAGCAAA
GACTCTCAGCCCGTGGTCACGAAAGTGCTAGAGCCATCTGAGGATCTAAA
GAACACGCACACATATAACGAGAAAAAGGTGTCCAAGAGCCCGAAGAGGT
AGACTACACCTAAAAATCCCTGCAGCACCGCCGTATGCGTGCCCAAAAAC
TGAACTGCACGTCCGTCCCACCGTTCGACTACAATAGCATCACCCCCTCC
CTGTCCCACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNN
back to top

Coding sequence (CDS) from alignment at Scaffold_246:19485..20048-

>EsuBft1408_6a-0001 ID=EsuBft1408_6a-0001|Name=EsuBft1408_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=219bp|location=Sequence derived from alignment at Scaffold_246:19485..20048- (Ectocarpus subulatus male Bft15b)
ATGTCATGCAACGGTAGTGCCTCTATCACCTCCGCCTGGAGCAGGCGACT
CTTGAGTCGGAATGGTGCTCTCGGCGTGTCGAAGATCTCACAGCCGTATC
ACTTGACGCACGCCCACGCTGTTCTGCCCGTGGTCACGAAAGTGCTAGAG
CCATCTGAGGATCTAAAGAACACGCACACATATAACGAGAAAAAGGTGTC
CAAGAGCCCGAAGAGGTAG
back to top