EsuBft1408_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1408_3a-0001
Unique NameEsuBft1408_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_246contigScaffold_246:50313..53347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G4G9
ProteomeIdEsuBft1408_3
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE
Protein domainsSignalP-TM
Protein domainsSSF54427
Protein domainsIPR018790
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length147
Hectar predicted targeting categorychloroplast
Evalue1.06e-79
EggNOG OGs2D8NW@1|root,2S5BV@2759|Eukaryota
Ec32 ortholog descriptionProtein of unknown function DUF2358
Ec32 orthologEc-07_000690.1
Date last modified2016-06-14
Date creation2016-06-14
DescriptionUncharacterized conserved protein (DUF2358)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1408_3aEsuBft1408_3aEctocarpus subulatus male Bft15bgeneScaffold_246 50313..53347 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1408_3a-0001EsuBft1408_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_246 50941..53301 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1408_3a-0001-exonagat-exon-78984Ectocarpus subulatus male Bft15bexonScaffold_246 50313..51159 -
EsuBft1408_3a-0001-exonEsuBft1408_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_246 51489..51579 -
EsuBft1408_3a-0001-exonagat-exon-78986Ectocarpus subulatus male Bft15bexonScaffold_246 51926..52000 -
EsuBft1408_3a-0001-exonagat-exon-78985Ectocarpus subulatus male Bft15bexonScaffold_246 52886..53347 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1408_3a-0001-exonagat-three_prime_utr-3647Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_246 50313..50940 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1408_3a-0001-cdsEsuBft1408_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_246 50941..51159 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1408_3a-0001-exonagat-five_prime_utr-2403Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_246 53302..53347 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1408_3a-0001 ID=EsuBft1408_3a-0001|Name=EsuBft1408_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1475bp|location=Sequence derived from alignment at Scaffold_246:50313..53347- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGGTTTCCCAGGATCGCTCACGCTTCCATCGCCGGTGGTCTTGGAGATGC
TGGCATTAAGTGTTATTTTGGCCTTGCTGGGTCCCAAATCAGAAGCAGTA
GCGTCCGACCAACCTCCTGCGTTCCAGACTCGTCCGATAGTCTCCCGCCG
CACAATTGCGCACGGTTCGCCTAAAGCGAGCACTCCTCCGCCCTGCGCGC
CCAATATACGCAAAACGACTGCATGGTACAGCGCACGAGACAATAAGGAT
GAGTCATCTTTGCACCATGATGCCAGCCACAGCGACAAATATGGAGGCAA
CGGCAGTCATGTCACGTCTAGCAGGCGAGCATTTTTGAACCATGTGGCTG
GAGCAGCAGCAGTGACAACAGCAGCAGCAGGAGGGACGCTGCCGAGCTTT
GGCGCGACAGCTCGGGGAGTGGAGGAAGTGAAGAAGGGGATTGAAGCAGA
CTTTCTTTCAAGGCGGTACTACGTTACTGGTGATTTGACTCCGTCTCTCT
ACCGGCCTGACTGCCTCTTCACCGATCCTACCACAAGAGTTGAAAGCGTC
GAGAGATACACGGCGGCGGTCAAGCTTCTGTTCGACCCTGACAACGCTCA
GGTCGATCTCCTCTCCTTGGTAATAAAGGATGACACCCATATTTTCGCGG
AGTGGCGACTTCAAGGCTACCTGAAGTTCCCCTGGCACCCATACGTGAAG
CCGTACACCGGAACAACGCTGTACACGCTCGATTCTAACGGTTTGATATC
TCTTCATGAGGAGACGTGGTCTATCTCAGCGCTGGAAGCAGCTCGGGCAA
CGATAACCCCGACAGCGGGGCCACAGGCAGCGATGGAATCATCATAGACA
TCAACAATCGCGCGGGAATCGGCCATCTACCATGAAGGGCCTCAAAAACA
ACGTGGCCACGGGGTGGAGGAAGCTGGAGACGGGGGAATGAAGCGAAGAC
TCCGTTCTATTGTTTCGTTCCCGCCCATCTCAAGGTTCATTCTGCACAAG
AGCTGGGCCAGGCGATGGGGTGTCGTAACTTGAGCCGGGAGGACATCTCA
CATTTTTGAAGATTTTGCATTGTTGTAACAATCGGTTGCCTGATCGACCT
GCTTTCGTATCGGTCCAACACTCAATGTGATTGTGTCTCCTTTTGGATGC
TGCTCAGTGGGTGTACGCTCTCGTTCTCGCGCAAGCTAACCCAGGTTACG
CGAATGCATAAAGCTTCTTCAATGCGATGCGGACGTCCACATTGGTATGT
AGGGGGACTGTTTCTTGGCTAGCGCCCCTCGAACTGGTTGGTCATATTTG
AGTTAGGAAGGACATACAAGGAGTTATTTTGCGCTATTGACTAGAAACGT
GACACAGCATACTCATTGGCCCACACGGCGGGCACTTGGTGTATGTCATC
CCTCGCATATATGCCCACCGGGCAGTGGTCTAGATTACGTTAACTTCTTG
GCGTCTGATGAAGAGATACATGGGC
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protein sequence of EsuBft1408_3a-0001

>EsuBft1408_3 ID=EsuBft1408_3|Name=EsuBft1408_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=266bp
MLALSVILALLGPKSEAVASDQPPAFQTRPIVSRRTIAHGSPKASTPPPC
APNIRKTTAWYSARDNKDESSLHHDASHSDKYGGNGSHVTSSRRAFLNHV
AGAAAVTTAAAGGTLPSFGATARGVEEVKKGIEADFLSRRYYVTGDLTPS
LYRPDCLFTDPTTRVESVERYTAAVKLLFDPDNAQVDLLSLVIKDDTHIF
AEWRLQGYLKFPWHPYVKPYTGTTLYTLDSNGLISLHEETWSISALEAAR
ATITPTAGPQAAMESS
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mRNA from alignment at Scaffold_246:50313..53347-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1408_3a-0001 ID=EsuBft1408_3a-0001|Name=EsuBft1408_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3035bp|location=Sequence derived from alignment at Scaffold_246:50313..53347- (Ectocarpus subulatus male Bft15b)
GGGTTTCCCAGGATCGCTCACGCTTCCATCGCCGGTGGTCTTGGAGATGC
TGGCATTAAGTGTTATTTTGGCCTTGCTGGGTCCCAAATCAGAAGCAGTA
GCGTCCGACCAACCTCCTGCGTTCCAGACTCGTCCGATAGTCTCCCGCCG
CACAATTGCGCACGGTTCGCCTAAAGCGAGCACTCCTCCGCCCTGCGCGC
CCAATATACGCAAAACGACTGCATGGTACAGCGCACGAGACAATAAGGAT
GAGTCATCTTTGCACCATGATGCCAGCCACAGCGACAAATATGGAGGCAA
CGGCAGTCATGTCACGTCTAGCAGGCGAGCATTTTTGAACCATGTGGCTG
GAGCAGCAGCAGTGACAACAGCAGCAGCAGGAGGGACGCTGCCGAGCTTT
GGCGCGACAGCTCGGGGAGTGGAGGAAGTGAAGAAGGGGATTGAAGCAGA
CTTTCTTTCAAGGTGCAACCCAAGTGCTGTGGTGCTCTTCCCTCGTGCAT
CGATGAATATAATTATGCCGCGTGTCTTTAGAATCGCTGCTCAGTCAGTC
AGTGCGTCACTGCTGCAGGTGATGTAGTCTAGACATTGGTCAGTCTCAAA
GCGTATGTAGCGTCTGAGTGAGTTGCAGAGTGTGCCCCCAGCAATGCAAA
ATGTACATTTATTTCTGAAATTTTGGGTGAGGGCAAACCTTGTTGCTAAC
GCTACGATGGTGCTGTCCAAGATCGGCAAGAAGCGTTTCAACTTGAACAT
GAAGACAAACAACAGCAGTAGGCTCCTGTATAGACCCCAGACTACAAAAT
GTAAAATTATTGCGTTTTTTTTTTTGCGTGTCTACAGGATGTACACGAAA
CATCACGTGCAGCGAACGTGTAATAGCAGTTCGAGCTACCGGTGTCGAAG
TAGCTCTGGAAATGCGTCGGTACTTCCTTCCCTGTGTCCCCAAGGTTCTC
ACGGAGGCACAATTTGCGACAACGGTGTCGCAAGCTACATGTTCCGTCTG
GTATTAAAGATGTGTTGACAATCTCTTTCCAGGGCGTTGGCAAGCGAGCT
CGTGGGCCTCCACCACCCTCCCTGAGCCGAGTCCCCCCGTTACGTACAGC
AGGAGTTTAGCACGTACACGTGTAAGGGTTCGGCATAACTTTCTACATTC
TATGTTTTCTGCCATCATGTATAGCTTCCCCCTCCCAAGAAATCTGGTGA
GACACATTGCACGGAGAGAAGGCTGCATCTCTTTCTCTACCCTTTGACTT
TGATACGACCACTCCTCCTTGGTAGTGGGTACGCGAAACGGAATCTGTTG
TGTTGAACTTCTGACACCCCTACGAACGGCTGCCGGTCTACATGCAGGCG
GTACTACGTTACTGGTGATTTGACTCCGTCTCTCTACCGGCCTGACTGCC
TCTTCACCGATCCTACCACAAGGTGAATTTGAGAACGATCGCAGATTCCC
AGTTATGGTTCCAAGGTTCTCAGGATGCTATCGCCTGATGTCCGCAGTGC
TCTGTTGCGCCCCAAGGTGCCCTTTTCACTGGTAGGGTGTAGGACTCACC
TTGCATCAACGGCAATCTGGTATCCTTTCTTGGCCATGGGTTGTTGACAT
GTTTGTTGTCGTGCTTTCGTGACAGTGGGGTTGCAAGAGTCTCATGTAGC
AGCCACGGCGAGCCAAGCGCAGATTATCTCTTTGAGTCGCAGGTAACGCA
GTTAAATCCTTCCACGCGAATGTTTGCCCCTGTTTGTCCGACCATTGCTG
GCGATGTGTATTTGGTAGAGTTGAAAGCGTCGAGAGATACACGGCGGCGG
TCAAGCTTCTGTTCGACCCTGACAACGCTCAGGTCGATCTCCTCTCCTTG
GTAATAAAGGTGAGCAGTGGATGAACCAGTACAGTGCTGTATGGGCAAGC
AGTCGCGACGTGGACTACGCACGTTGCGCGAGCAGGTAGTCGATCAAGTT
GGACTCGTGCGGAGTGTACCTGCGACCCCGTATTTCCCAAAATGAGTTCC
TGTCACCGAGTCACCCTTCCTGCCCTGCACACTCACGGCCTCTGTCCCCC
AGCGTACCAACGCTTCGGCGTCCATATCTGCGACGTCGCATACCGAAGCG
CTTCGCTCTCAAACACCTCTCTGCTGAAATAAGCACACCTTTCGATCACT
TTGGTGTTAATTAATACACACGTATCGCCTTTGTTCAGGATGACACCCAT
ATTTTCGCGGAGTGGCGACTTCAAGGCTACCTGAAGTTCCCCTGGCACCC
ATACGTGAAGCCGTACACCGGAACAACGCTGTACACGCTCGATTCTAACG
GTTTGATATCTCTTCATGAGGAGACGTGGTCTATCTCAGCGCTGGAAGCA
GCTCGGGCAACGATAACCCCGACAGCGGGGCCACAGGCAGCGATGGAATC
ATCATAGACATCAACAATCGCGCGGGAATCGGCCATCTACCATGAAGGGC
CTCAAAAACAACGTGGCCACGGGGTGGAGGAAGCTGGAGACGGGGGAATG
AAGCGAAGACTCCGTTCTATTGTTTCGTTCCCGCCCATCTCAAGGTTCAT
TCTGCACAAGAGCTGGGCCAGGCGATGGGGTGTCGTAACTTGAGCCGGGA
GGACATCTCACATTTTTGAAGATTTTGCATTGTTGTAACAATCGGTTGCC
TGATCGACCTGCTTTCGTATCGGTCCAACACTCAATGTGATTGTGTCTCC
TTTTGGATGCTGCTCAGTGGGTGTACGCTCTCGTTCTCGCGCAAGCTAAC
CCAGGTTACGCGAATGCATAAAGCTTCTTCAATGCGATGCGGACGTCCAC
ATTGGTATGTAGGGGGACTGTTTCTTGGCTAGCGCCCCTCGAACTGGTTG
GTCATATTTGAGTTAGGAAGGACATACAAGGAGTTATTTTGCGCTATTGA
CTAGAAACGTGACACAGCATACTCATTGGCCCACACGGCGGGCACTTGGT
GTATGTCATCCCTCGCATATATGCCCACCGGGCAGTGGTCTAGATTACGT
TAACTTCTTGGCGTCTGATGAAGAGATACATGGGC
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Coding sequence (CDS) from alignment at Scaffold_246:50313..53347-

>EsuBft1408_3a-0001 ID=EsuBft1408_3a-0001|Name=EsuBft1408_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=801bp|location=Sequence derived from alignment at Scaffold_246:50313..53347- (Ectocarpus subulatus male Bft15b)
ATGCTGGCATTAAGTGTTATTTTGGCCTTGCTGGGTCCCAAATCAGAAGC
AGTAGCGTCCGACCAACCTCCTGCGTTCCAGACTCGTCCGATAGTCTCCC
GCCGCACAATTGCGCACGGTTCGCCTAAAGCGAGCACTCCTCCGCCCTGC
GCGCCCAATATACGCAAAACGACTGCATGGTACAGCGCACGAGACAATAA
GGATGAGTCATCTTTGCACCATGATGCCAGCCACAGCGACAAATATGGAG
GCAACGGCAGTCATGTCACGTCTAGCAGGCGAGCATTTTTGAACCATGTG
GCTGGAGCAGCAGCAGTGACAACAGCAGCAGCAGGAGGGACGCTGCCGAG
CTTTGGCGCGACAGCTCGGGGAGTGGAGGAAGTGAAGAAGGGGATTGAAG
CAGACTTTCTTTCAAGGCGGTACTACGTTACTGGTGATTTGACTCCGTCT
CTCTACCGGCCTGACTGCCTCTTCACCGATCCTACCACAAGAGTTGAAAG
CGTCGAGAGATACACGGCGGCGGTCAAGCTTCTGTTCGACCCTGACAACG
CTCAGGTCGATCTCCTCTCCTTGGTAATAAAGGATGACACCCATATTTTC
GCGGAGTGGCGACTTCAAGGCTACCTGAAGTTCCCCTGGCACCCATACGT
GAAGCCGTACACCGGAACAACGCTGTACACGCTCGATTCTAACGGTTTGA
TATCTCTTCATGAGGAGACGTGGTCTATCTCAGCGCTGGAAGCAGCTCGG
GCAACGATAACCCCGACAGCGGGGCCACAGGCAGCGATGGAATCATCATA
G
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