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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FXH0 |
| ProteomeId | EsuBft1397_4 |
| Protein domains | SSF81301 |
| Protein domains | Coil |
| Protein domains | G3DSA |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 93 |
| Hectar predicted targeting category | other localisation |
| Evalue | 9.07e-191 |
| EggNOG OGs | COG0457@1|root,KOG1840@2759|Eukaryota |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| KEGG ko | ko:K10407 |
| KEGG Pathway | ko05132,map05132 |
| Description | determination of stomach left/right asymmetry |
| COG category | C |
| BRITE | ko00000,ko00001,ko03019,ko04812 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1397_4a-0001 ID=EsuBft1397_4a-0001|Name=EsuBft1397_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=939bp|location=Sequence derived from alignment at Scaffold_68:6455..9049+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGAGCGTCGACATCGCGGAGCTTCTCCGCCTGGAGGCAGAGCTGGAGAA
CTCATGTGAAGATTGCCGAAACCCATACGATCGAGACGCCAAGCTGAATT
TGCTCAAGTTTCTTCAAATCAGGGCGGTACTGCAGTACGAAGAAGCGTAC
GACCGATTGTACTACGAGCTCAACAAGCATGGAGGGCTTGAGTGTCTTCG
CGAAATCGCTCCGGCGCGGCTGAAGGACCTTCTCCAGCCCAAAGTCTTGG
AGCTTCAGGACTGCAATGAGGACGTTCGATTTGCAGCACAGTTGGAGTTC
TATCTTGCGGACGCCGAGCTTGCAAAGAACCGTTTGGACGAGCTCGTGGC
AGATATAGCGAAACACACGGGGGAGTGCGAGGTTCACTGCGCGGAGGTCA
AGTCACGAGCAAGCACGCAACGAAAGGCCAGCAAGTCATATGGTGGGGAC
GTTCGAAAGGTTGCTGACATGGCGAGGGTAAGCGTGATCTGTGACAACCC
GGAGGCCTTGAAACGGGCGTACTTGGCTATCGTAGAGTCGTTCCAGGGAG
ACGTTCTTCGGGTGGCAAACGGCTTCAACTCCGACTGGATGCCAAGCGGT
TATCGGGACGTGAAAGTAAATCCCGTCGTCGACGAGCACCTTTGCGAGAT
TCAGCTGCACCTCCGTGAGTTCTTCACACTGAAAGGCGGTCAACACGCCG
TGTACGAGTGGGCGCGGGACCTCAAAGTGACCACGATAATGCGCGCCGAA
AACCTGTTCGAGTTTCTATCCCGTGAGATTACGGAGGAGATGATCGGCTT
GGCTGAACGGAACTGGCATGGGACCGGGCGCTTCCTTCCGCGTCTGCAGC
TCGCTGCTGGGCAGTACGACCAGGCCGAGGAGGGTTTTAGACAGGTTTGC
TTTGGATCAGTAGCCCCATATGTGTGTATAGGTTCTTGA back to topprotein sequence of EsuBft1397_4a-0001 >EsuBft1397_4 ID=EsuBft1397_4|Name=EsuBft1397_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=312bp
MSVDIAELLRLEAELENSCEDCRNPYDRDAKLNLLKFLQIRAVLQYEEAY
DRLYYELNKHGGLECLREIAPARLKDLLQPKVLELQDCNEDVRFAAQLEF
YLADAELAKNRLDELVADIAKHTGECEVHCAEVKSRASTQRKASKSYGGD
VRKVADMARVSVICDNPEALKRAYLAIVESFQGDVLRVANGFNSDWMPSG
YRDVKVNPVVDEHLCEIQLHLREFFTLKGGQHAVYEWARDLKVTTIMRAE
NLFEFLSREITEEMIGLAERNWHGTGRFLPRLQLAAGQYDQAEEGFRQVC
FGSVAPYVCIGS back to topmRNA from alignment at Scaffold_68:6455..9049+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1397_4a-0001 ID=EsuBft1397_4a-0001|Name=EsuBft1397_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2595bp|location=Sequence derived from alignment at Scaffold_68:6455..9049+ (Ectocarpus subulatus male Bft15b)
ATGAGCGTCGACATCGCGGAGCTTCTCCGCCTGGAGGCAGAGCTGGAGAA
CTCATGTGAAGATTGCCGAAACCCATACGATCGAGACGCCAAGCTGAATT
TGCTCAAGTTTCTTCAAATCAGGGCGGTACTGCAGTACGAAGAAGCGTAC
GACCGATTGTACTACGAGCTCAACAAGCATGGAGGGCTTGAGTGTCTTCG
CGAAATCGCTCCGGCGCGGCTGAAGGACCTTCTCCAGCCCAAAGTCTTGG
AGCTTCAGGACTGCAATGAGGACGTTCGATTTGCAGCACAGTTGGAGTTC
TATCTTGCGGACGCCGAGCTTGCAAAGAACCGTTTGGACGAGCTCGTGGC
AGATATAGCGAAACACACGGGGGAGTGCGAGGTTCACTGCGCGGAGGTCA
AGTCACGAGCAAGCACGCAACGAAAGGCCAGCAAGTCATATGGTGGGGAC
GTTCGAAAGGTTGCTGACATGGCGAGGGTAAGCGTGATCTGTGACAACCC
GGAGGCCTTGAAACGGGCGTACTTGGCTATCGTAGAGTCGTTCCAGGTGA
GGAGATTTCGCAGTTTGCAAACGACCCGCAATTCTGCAAGTGGTGTCTTA
CAAGTCCGCCCCGGTTACTTACTGTTTTTTTGTTTTGTTTCTCCCCGGTT
ACCTACTGGTTTTTTATTTTGGTTCTTGAGCAAACTTCGGTCGGCGTTTG
TGAGTCTGCCATTTGGTTTGATCTTAGTGGGTGAAGCACCTGCGGAAAAT
CGGGAAGGCCCAAATTTCCTTCCTTGTTGATTGGAGTAGCTGTCGCAGAC
AGTGCTCTGCGTACAGTCCGGCATCGATGGTTATTATGTCAATGTTGTCA
TATGAAATTTGACAACAAGAAAGGGTCTTCACCTTTTCCCCTCTGCCGAG
AGCCAAGCGCCACTTGAAGCCCGGAAACAAATGCGGATGTCTGCAGGATA
AGACCAAGTACCAAGGTTTTCAAGTGGAAATTGTGTGCACGTGTGATGGA
CGTGGTGGTGCGGTTTGTGTTGGTTTCAGATTCAGTGGTGGACATAAGAC
GTAGCGTCAGGGTTGATGGTTGTAGAGTACAGGTCGGTGTGCGTCCCTGG
GCCGTTGGTCTGGTAAGAATGGGTATGATGGCACCAAAAAGCGCGAGCAT
GACACTCATCGAAATGCACTTGGTGAGAAAAGAAAACATCGACAATAAAT
TCCCGAACGCATACTTTCGGGCATACATTGGTCATCATAAGGAAGCTCAC
GGCCAACGATATTCCTAGCAGCTCTTGATGCTGTCACGTATGAGTATTGT
GGAACGAAAGCGCGGTACCAATCGTCAACATTTACTTGCTATATAGAAGT
ACATAATATACATGTACATAAAAGATTTGGACATTTTTTGTGCTTGGGCA
TTTCTTTCTCTCGCGGCAGCGAGTCTTTTCTCCTGCTCCATTCTCAGGGG
CGCGCAGGAGGCTCCTCGGTACATCACCGCGCACGCCCGGAACTAGGAAG
GTACCCGTGGCACGCGTGGTTGACGCCCAAAGTCGCGAAAACTGGCTCTA
TACCCCGGGAACGCGTTCCGCGAAGACGCAGCCTGGCGAACCAATGCTCG
AACCCATAAAAGAACGACAGAGTAAGAATGGCCCGCACATGTCATCCCGA
TGTCCAGCAGCACCTTTCCCTTTGCTCGTCTACGCTTTGCAGCGGGCACA
GCGATACAGTGCTCTGCAGTAGGCAAGTCTGAGCGCATGCACCAACAGTA
ATGTTGATCATATTGTTTATTTTCTCGCTTATGCCTTTCTTTTTGGTGTT
GTTTCGGATTTCAAAGTATTCCGGTTATCATCATCAATCACTGGAAATCT
GTATTTCGCCGGCAAGTTGTCCGCTCGAGCTGGCTCCAAAATACGTGCGT
GCGCGATGATTTGCACAGAACACGAGCGCTGACGTTGCCCTTTCAGAAGA
ACACACAAGCCTTCTCTAGCATCTCATGTTGCGTCACCCGCCAGAGGCTC
GACACCCACGCCCCGAAGGGAGACCTTGAAAAAGTATATATTTTATATGT
ATGATGTGTGATCCCGCCCGCCTCAAATTCCTTTCATCCTGCGTGGCCTT
GAATTGCCCAGAAAGTACGTGCCCCTGATGTGTTGGATTACAGGAACAGA
TGGCGCGGCTGACTCGTTTCGGCCACCATCTTGAAAATATTCATACATAC
AGGGAGACGTTCTTCGGGTGGCAAACGGCTTCAACTCCGACTGGATGCCA
AGCGGTTATCGGGACGTGAAAGTAAATCCCGTCGTCGACGAGCACCTTTG
CGAGATTCAGCTGCACCTCCGTGAGTTCTTCACACTGAAAGGCGGTCAAC
ACGCCGTGTACGAGTGGGCGCGGGACCTCAAAGTGACCACGATAATGCGC
GCCGAAAACCTGTTCGAGTTTCTATCCCGTGAGATTACGGAGGAGATGAT
CGGCTTGGCTGAACGGAACTGGCATGGGACCGGGCGCTTCCTTCCGCGTC
TGCAGCTCGCTGCTGGGCAGTACGACCAGGCCGAGGAGGGTTTTAGACAG
GTTTGCTTTGGATCAGTAGCCCCATATGTGTGTATAGGTTCTTGA back to topCoding sequence (CDS) from alignment at Scaffold_68:6455..9049+ >EsuBft1397_4a-0001 ID=EsuBft1397_4a-0001|Name=EsuBft1397_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=939bp|location=Sequence derived from alignment at Scaffold_68:6455..9049+ (Ectocarpus subulatus male Bft15b)
ATGAGCGTCGACATCGCGGAGCTTCTCCGCCTGGAGGCAGAGCTGGAGAA
CTCATGTGAAGATTGCCGAAACCCATACGATCGAGACGCCAAGCTGAATT
TGCTCAAGTTTCTTCAAATCAGGGCGGTACTGCAGTACGAAGAAGCGTAC
GACCGATTGTACTACGAGCTCAACAAGCATGGAGGGCTTGAGTGTCTTCG
CGAAATCGCTCCGGCGCGGCTGAAGGACCTTCTCCAGCCCAAAGTCTTGG
AGCTTCAGGACTGCAATGAGGACGTTCGATTTGCAGCACAGTTGGAGTTC
TATCTTGCGGACGCCGAGCTTGCAAAGAACCGTTTGGACGAGCTCGTGGC
AGATATAGCGAAACACACGGGGGAGTGCGAGGTTCACTGCGCGGAGGTCA
AGTCACGAGCAAGCACGCAACGAAAGGCCAGCAAGTCATATGGTGGGGAC
GTTCGAAAGGTTGCTGACATGGCGAGGGTAAGCGTGATCTGTGACAACCC
GGAGGCCTTGAAACGGGCGTACTTGGCTATCGTAGAGTCGTTCCAGGGAG
ACGTTCTTCGGGTGGCAAACGGCTTCAACTCCGACTGGATGCCAAGCGGT
TATCGGGACGTGAAAGTAAATCCCGTCGTCGACGAGCACCTTTGCGAGAT
TCAGCTGCACCTCCGTGAGTTCTTCACACTGAAAGGCGGTCAACACGCCG
TGTACGAGTGGGCGCGGGACCTCAAAGTGACCACGATAATGCGCGCCGAA
AACCTGTTCGAGTTTCTATCCCGTGAGATTACGGAGGAGATGATCGGCTT
GGCTGAACGGAACTGGCATGGGACCGGGCGCTTCCTTCCGCGTCTGCAGC
TCGCTGCTGGGCAGTACGACCAGGCCGAGGAGGGTTTTAGACAGGTTTGC
TTTGGATCAGTAGCCCCATATGTGTGTATAGGTTCTTGA back to top
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