EsuBft1391_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1391_4a-0001
Unique Name	EsuBft1391_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_523	contig	Scaffold_523:1052374..1053309 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FIA9
ProteomeId	EsuBft1391_4
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	93
Hectar predicted targeting category	other localisation
Evalue	3.97e-20
EggNOG OGs	2D5KK@1\|root,2SYVY@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1391_4a	EsuBft1391_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_523 1052374..1053309 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1391_4a-0001-exon	EsuBft1391_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 1052374..1053309 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1391_4a-0001-cds	EsuBft1391_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_523 1052374..1053309 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1391_4a-0001	EsuBft1391_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_523 1052374..1053309 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_523:1052374..1053309+
coding sequence from alignment at Scaffold_523:1052374..1053309+

spliced messenger RNA

>EsuBft1391_4a-0001 ID=EsuBft1391_4a-0001|Name=EsuBft1391_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=936bp|location=Sequence derived from alignment at Scaffold_523:1052374..1053309+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTACCTGGATGGACTGCACGATGTCCTTCACGTGGGCGTGGATAG
GGAAGGCGGCGCGCGGTCGTTGGAGGGGACCAGGAGACCTTCACCCTCGT
GCACAAGGTCAAAAAATCTTCACGAGGATAAATACGCATGGGCGTTACCG
TGGATCGGCGACTGGCACCTGCTGGAGCACACGCCAGATGTTCTTTTCCG
CAAGTGGGGCGGGTTCGCTCTCATTCCCCTGGCGAAGGCAGCCGACTGCT
ATGACAAGAAATTGGAGGGCAAAACCTACCACAAACGGCACCACTTTTTC
GTTGGTTTTTTGGAGGCGTTACGGCAAGCTTGCATTGGCGAGGTGAAGGA
GGCATCCCAGCCTGGGGGGGGGAGGCTTGCTGACGAAGAACTTCTGGCGA
ATTTGCTCGGCTACCGGATCGACCGGACCAAGCACAAGACTTTCGGGCAG
TGGGCGGACTTGCTGCTTTCCGATGGGATGGCATACCTGGCTGTGTACAT
CGGAATACGAACAGAGGACTTTGATCTGCGGGAAGCCGCCATTCGCAAAA
TCGCCCCGCTGTTCTTGGGGTACAACAAAAACCTGTATCACGCATTGTGC
ATCCAATACCTCGCAGACATAGCGCGATTGAGTCCCGCTGAGCGGTTGTT
CATCAGTGAGACGTTTAGCCTATCGCTCTCTGAGAAACTCAGTAATAATT
CGGGACTCGGCGAGATCCAGAAGATGATCATGACCAAGGATATCAAGCAG
GCTCCAACGGGCACCGACGTCAGGCATCTCCAGAGACTTACCCTCACGCT
ACAGACCCTGTCGACCGTCGCACGGGAGGTCAAGGAAATGTACGGCAGTA
GTGTCATCTACAACCGGAAGATCTACGCTAGTGGCCACAGAAGGAAGATC
GTCGATAGAATCCACGCTTCCCTCGTTGCGGAGTAA

protein sequence of EsuBft1391_4a-0001

>EsuBft1391_4 ID=EsuBft1391_4|Name=EsuBft1391_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=311bp
MEYLDGLHDVLHVGVDREGGARSLEGTRRPSPSCTRSKNLHEDKYAWALP
WIGDWHLLEHTPDVLFRKWGGFALIPLAKAADCYDKKLEGKTYHKRHHFF
VGFLEALRQACIGEVKEASQPGGGRLADEELLANLLGYRIDRTKHKTFGQ
WADLLLSDGMAYLAVYIGIRTEDFDLREAAIRKIAPLFLGYNKNLYHALC
IQYLADIARLSPAERLFISETFSLSLSEKLSNNSGLGEIQKMIMTKDIKQ
APTGTDVRHLQRLTLTLQTLSTVAREVKEMYGSSVIYNRKIYASGHRRKI
VDRIHASLVAE

mRNA from alignment at Scaffold_523:1052374..1053309+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1391_4a-0001 ID=EsuBft1391_4a-0001|Name=EsuBft1391_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=936bp|location=Sequence derived from alignment at Scaffold_523:1052374..1053309+ (Ectocarpus subulatus male Bft15b)
ATGGAGTACCTGGATGGACTGCACGATGTCCTTCACGTGGGCGTGGATAG
GGAAGGCGGCGCGCGGTCGTTGGAGGGGACCAGGAGACCTTCACCCTCGT
GCACAAGGTCAAAAAATCTTCACGAGGATAAATACGCATGGGCGTTACCG
TGGATCGGCGACTGGCACCTGCTGGAGCACACGCCAGATGTTCTTTTCCG
CAAGTGGGGCGGGTTCGCTCTCATTCCCCTGGCGAAGGCAGCCGACTGCT
ATGACAAGAAATTGGAGGGCAAAACCTACCACAAACGGCACCACTTTTTC
GTTGGTTTTTTGGAGGCGTTACGGCAAGCTTGCATTGGCGAGGTGAAGGA
GGCATCCCAGCCTGGGGGGGGGAGGCTTGCTGACGAAGAACTTCTGGCGA
ATTTGCTCGGCTACCGGATCGACCGGACCAAGCACAAGACTTTCGGGCAG
TGGGCGGACTTGCTGCTTTCCGATGGGATGGCATACCTGGCTGTGTACAT
CGGAATACGAACAGAGGACTTTGATCTGCGGGAAGCCGCCATTCGCAAAA
TCGCCCCGCTGTTCTTGGGGTACAACAAAAACCTGTATCACGCATTGTGC
ATCCAATACCTCGCAGACATAGCGCGATTGAGTCCCGCTGAGCGGTTGTT
CATCAGTGAGACGTTTAGCCTATCGCTCTCTGAGAAACTCAGTAATAATT
CGGGACTCGGCGAGATCCAGAAGATGATCATGACCAAGGATATCAAGCAG
GCTCCAACGGGCACCGACGTCAGGCATCTCCAGAGACTTACCCTCACGCT
ACAGACCCTGTCGACCGTCGCACGGGAGGTCAAGGAAATGTACGGCAGTA
GTGTCATCTACAACCGGAAGATCTACGCTAGTGGCCACAGAAGGAAGATC
GTCGATAGAATCCACGCTTCCCTCGTTGCGGAGTAA

Coding sequence (CDS) from alignment at Scaffold_523:1052374..1053309+

>EsuBft1391_4a-0001 ID=EsuBft1391_4a-0001|Name=EsuBft1391_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=936bp|location=Sequence derived from alignment at Scaffold_523:1052374..1053309+ (Ectocarpus subulatus male Bft15b)
ATGGAGTACCTGGATGGACTGCACGATGTCCTTCACGTGGGCGTGGATAG
GGAAGGCGGCGCGCGGTCGTTGGAGGGGACCAGGAGACCTTCACCCTCGT
GCACAAGGTCAAAAAATCTTCACGAGGATAAATACGCATGGGCGTTACCG
TGGATCGGCGACTGGCACCTGCTGGAGCACACGCCAGATGTTCTTTTCCG
CAAGTGGGGCGGGTTCGCTCTCATTCCCCTGGCGAAGGCAGCCGACTGCT
ATGACAAGAAATTGGAGGGCAAAACCTACCACAAACGGCACCACTTTTTC
GTTGGTTTTTTGGAGGCGTTACGGCAAGCTTGCATTGGCGAGGTGAAGGA
GGCATCCCAGCCTGGGGGGGGGAGGCTTGCTGACGAAGAACTTCTGGCGA
ATTTGCTCGGCTACCGGATCGACCGGACCAAGCACAAGACTTTCGGGCAG
TGGGCGGACTTGCTGCTTTCCGATGGGATGGCATACCTGGCTGTGTACAT
CGGAATACGAACAGAGGACTTTGATCTGCGGGAAGCCGCCATTCGCAAAA
TCGCCCCGCTGTTCTTGGGGTACAACAAAAACCTGTATCACGCATTGTGC
ATCCAATACCTCGCAGACATAGCGCGATTGAGTCCCGCTGAGCGGTTGTT
CATCAGTGAGACGTTTAGCCTATCGCTCTCTGAGAAACTCAGTAATAATT
CGGGACTCGGCGAGATCCAGAAGATGATCATGACCAAGGATATCAAGCAG
GCTCCAACGGGCACCGACGTCAGGCATCTCCAGAGACTTACCCTCACGCT
ACAGACCCTGTCGACCGTCGCACGGGAGGTCAAGGAAATGTACGGCAGTA
GTGTCATCTACAACCGGAAGATCTACGCTAGTGGCCACAGAAGGAAGATC
GTCGATAGAATCCACGCTTCCCTCGTTGCGGAGTAA