EsuBft1391_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1391_2a-0001
Unique Name	EsuBft1391_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_523	contig	Scaffold_523:1064022..1066249 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1391_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	203
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1391_2a	EsuBft1391_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_523 1064022..1066249 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1391_2a-0001-exon	agat-exon-61594	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 1064022..1065757 -
EsuBft1391_2a-0001-exon	EsuBft1391_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 1065949..1066249 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1391_2a-0001-exon	agat-three_prime_utr-3533	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_523 1064022..1065454 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1391_2a-0001-cds	EsuBft1391_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_523 1065455..1065757 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1391_2a-0001-exon	agat-five_prime_utr-2331	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_523 1066087..1066249 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1391_2a-0001	EsuBft1391_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_523 1065455..1066086 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_523:1064022..1066249-
coding sequence from alignment at Scaffold_523:1064022..1066249-

spliced messenger RNA

>EsuBft1391_2a-0001 ID=EsuBft1391_2a-0001|Name=EsuBft1391_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2037bp|location=Sequence derived from alignment at Scaffold_523:1064022..1066249- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AGTGTTTTGCCTCACGCAGGGCTACGTCCAGCGGACCCGCCGCTGCCGCT
GCCGCTGCCGCTGCCGCCAACAATGCCGCCAACGTTTCGGCGGTGGACAG
TTCGGATAGTGACGCGGATGGTGGGGGCAATGACGAGTTTGTAATGGACA
TCGACGGTGAAGGATGTCGCAAGGAAGCTTCCGTGGGCAGTTCCGGCAGG
GGCTGTGGGGGTGGCAGCGCGAGGGAGTGGGCGCTGCAGGCGGGCCGAAA
AGGCCGCGGTGCAATAAACACCGCGTTCCGTGCAACATTATGGTCCTTCA
AGGCAAGAGATATTGGGAGTGCGGCGAGGACCTCGACATCATGTGCGACC
ACTTCGAGTCTGCGGGCGGCGTGACGGTGGAGGACGATTCCGGTGAGGCT
TTGGATGCTTCAGCGGGTACCACTGGTGCCGCCGCGAACGGTGTTGGCGT
TGTTTCCGTTAACGCTGCAGGCGGCATGGGGATGGGGAGCGGAACCGCCG
CAGGGGGTGCGTCTGCTGCCGCGGGTGCTTCTCGTGCCGTCACGAACGGT
GCTGGCGGAGTTGCTTCCGTGGGCGCTGCAGGCGGCGGCATGGGTATGAG
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNAACACAAGAGCTCTTGCTTGGGAAGCCATCACGAAC
CATTTCCCCAACGGTGGCCAGGTGGCGGGTGCAGCTGCAGCATACATGGC
AGCTTTCGCAGCCCAAAAACCAGCCAACTGACTCTAGGTTGACGGCAACA
CGTACGCCGAGCACTTTTGTACGAGTTGTGCGCGACCTGTTTCCTCGGGA
GGTGGTTTTGTCGAAGGAAAAAAATGTTGCCGCTATATTTGTGTACTTAT
GTTGAGCCGCGGTGATCGTCAGTGGCTTCGCTTGAAACGCCTGCTGTGCG
AAGTGTTCAAGTATGAGTTAGGAGGTCGAGCGAGAAGGAGGGCATATGAT
CTCTCTCTCTCACTCTCTCTTTTTTTTTTTTGGCAATGGCAAGGGGATGG
CTTCCACTGCACAAAAGTACTGGTGGTCCAAATTTCCTGAATACTCCTTC
CTCTCTGCATGGAGTACTATTCAACGGTAACGTTTTCTCCAACGTTGGAC
ACTTTTGTTTTCGACCGACGAAATGTCGCGCAAGGCTGTCAAGATTTTCA
GAGATGGGTAACCACCTCCTGCCTATGTAGTCTCTGCGGGAGAGGGTTCC
CCCTATTTTCTGGTTAGGAATGTCGAGGATTCAGTGCTTCCGACTCGTGT
CGGTACATTGCTTGCCAGTGGGCTAGTGGTTTGTTGTGGGGAGCCTGTTG
GTGATTGATGCACTTGTTATTGTGCACAGTATTAATGAACCGGCGTTTAC
CGGCTGGTAGGTAACGTCAACATTTACGCAGTTGGGTACTTATGCCGTGT
CCCAAAGGAAGGTTGATCCCATGTCGATGTTTCCTGA

protein sequence of EsuBft1391_2a-0001

>EsuBft1391_2 ID=EsuBft1391_2|Name=EsuBft1391_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=147bp
MSQGSFRGQFRQGLWGWQREGVGAAGGPKRPRCNKHRVPCNIMVLQGKRY
WECGEDLDIMCDHFESAGGVTVEDDSGEALDASAGTTGAAANGVGVVSVN
AAGGMGMGSGTAAGGASAAAGASRAVTNGAGGVASVGAAGGGMGMRX

mRNA from alignment at Scaffold_523:1064022..1066249-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1391_2a-0001 ID=EsuBft1391_2a-0001|Name=EsuBft1391_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2228bp|location=Sequence derived from alignment at Scaffold_523:1064022..1066249- (Ectocarpus subulatus male Bft15b)
AGTGTTTTGCCTCACGCAGGGCTACGTCCAGCGGACCCGCCGCTGCCGCT
GCCGCTGCCGCTGCCGCCAACAATGCCGCCAACGTTTCGGCGGTGGACAG
TTCGGATAGTGACGCGGATGGTGGGGGCAATGACGAGTTTGTAATGGACA
TCGACGGTGAAGGATGTCGCAAGGAAGCTTCCGTGGGCAGTTCCGGCAGG
GGCTGTGGGGGTGGCAGCGCGAGGGAGTGGGCGCTGCAGGCGGGCCGAAA
AGGCCGCGGTGCAATAAACACCGCGTTCCGTGCAACATTATGGTCCTTCA
AGTGAGTACAATCGTAGCGTTGTTGTGTGGCGATAATGGGGTACCTGCGT
GGAGGTTTGCGGCGCTCATCACGCGATGTCTTGGTCGTTCGTCCCAAAGT
CCTTGCCATCTGGGTGAATCGCAAACGCAAGAGCGCAACTGACCTCTTCA
CGTGTTCCTCCCCCCCGCCCTCCCGAAATACCGCCACCCCAGGGCAAGAG
ATATTGGGAGTGCGGCGAGGACCTCGACATCATGTGCGACCACTTCGAGT
CTGCGGGCGGCGTGACGGTGGAGGACGATTCCGGTGAGGCTTTGGATGCT
TCAGCGGGTACCACTGGTGCCGCCGCGAACGGTGTTGGCGTTGTTTCCGT
TAACGCTGCAGGCGGCATGGGGATGGGGAGCGGAACCGCCGCAGGGGGTG
CGTCTGCTGCCGCGGGTGCTTCTCGTGCCGTCACGAACGGTGCTGGCGGA
GTTGCTTCCGTGGGCGCTGCAGGCGGCGGCATGGGTATGAGGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNAACACAAGAGCTCTTGCTTGGGAAGCCATCACGAACCATTTCCCC
AACGGTGGCCAGGTGGCGGGTGCAGCTGCAGCATACATGGCAGCTTTCGC
AGCCCAAAAACCAGCCAACTGACTCTAGGTTGACGGCAACACGTACGCCG
AGCACTTTTGTACGAGTTGTGCGCGACCTGTTTCCTCGGGAGGTGGTTTT
GTCGAAGGAAAAAAATGTTGCCGCTATATTTGTGTACTTATGTTGAGCCG
CGGTGATCGTCAGTGGCTTCGCTTGAAACGCCTGCTGTGCGAAGTGTTCA
AGTATGAGTTAGGAGGTCGAGCGAGAAGGAGGGCATATGATCTCTCTCTC
TCACTCTCTCTTTTTTTTTTTTGGCAATGGCAAGGGGATGGCTTCCACTG
CACAAAAGTACTGGTGGTCCAAATTTCCTGAATACTCCTTCCTCTCTGCA
TGGAGTACTATTCAACGGTAACGTTTTCTCCAACGTTGGACACTTTTGTT
TTCGACCGACGAAATGTCGCGCAAGGCTGTCAAGATTTTCAGAGATGGGT
AACCACCTCCTGCCTATGTAGTCTCTGCGGGAGAGGGTTCCCCCTATTTT
CTGGTTAGGAATGTCGAGGATTCAGTGCTTCCGACTCGTGTCGGTACATT
GCTTGCCAGTGGGCTAGTGGTTTGTTGTGGGGAGCCTGTTGGTGATTGAT
GCACTTGTTATTGTGCACAGTATTAATGAACCGGCGTTTACCGGCTGGTA
GGTAACGTCAACATTTACGCAGTTGGGTACTTATGCCGTGTCCCAAAGGA
AGGTTGATCCCATGTCGATGTTTCCTGA

Coding sequence (CDS) from alignment at Scaffold_523:1064022..1066249-

>EsuBft1391_2a-0001 ID=EsuBft1391_2a-0001|Name=EsuBft1391_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=441bp|location=Sequence derived from alignment at Scaffold_523:1064022..1066249- (Ectocarpus subulatus male Bft15b)
ATGTCGCAAGGAAGCTTCCGTGGGCAGTTCCGGCAGGGGCTGTGGGGGTG
GCAGCGCGAGGGAGTGGGCGCTGCAGGCGGGCCGAAAAGGCCGCGGTGCA
ATAAACACCGCGTTCCGTGCAACATTATGGTCCTTCAAGGCAAGAGATAT
TGGGAGTGCGGCGAGGACCTCGACATCATGTGCGACCACTTCGAGTCTGC
GGGCGGCGTGACGGTGGAGGACGATTCCGGTGAGGCTTTGGATGCTTCAG
CGGGTACCACTGGTGCCGCCGCGAACGGTGTTGGCGTTGTTTCCGTTAAC
GCTGCAGGCGGCATGGGGATGGGGAGCGGAACCGCCGCAGGGGGTGCGTC
TGCTGCCGCGGGTGCTTCTCGTGCCGTCACGAACGGTGCTGGCGGAGTTG
CTTCCGTGGGCGCTGCAGGCGGCGGCATGGGTATGAGGNNN