EsuBft1387_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1387_8a-0001
Unique NameEsuBft1387_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:466437..467542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1387_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length31
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_003960.3
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1387_8aEsuBft1387_8aEctocarpus subulatus male Bft15bgeneScaffold_630 466437..467542 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1387_8a-0001-exonagat-exon-12278Ectocarpus subulatus male Bft15bexonScaffold_630 466437..466477 -
EsuBft1387_8a-0001-exonagat-exon-12279Ectocarpus subulatus male Bft15bexonScaffold_630 466688..466820 -
EsuBft1387_8a-0001-exonEsuBft1387_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 467399..467542 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1387_8a-0001-cdsEsuBft1387_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 466437..466477 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1387_8a-0001EsuBft1387_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 466437..467542 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1387_8a-0001 ID=EsuBft1387_8a-0001|Name=EsuBft1387_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=318bp|location=Sequence derived from alignment at Scaffold_630:466437..467542- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCAGGGCGAGCGAGCAACGCGTCTGGAACCCGTGAATCAATCTGG
TGGAGGAGGAGTGATGCCGCCGTACATGAAGGCGATTTTACATATCGTCC
GGTTGGCCTCCATTCATTCATTGTATATAGTTGGCGGTGATACGTTCTAC
GCGAGGAGTGAACCCGGCCAGCCGCCTGAATACTGCACGGTCTTCCACCA
CATGATAAAAAGCGCGGGATCCACCATTAAGCGCAACCTTTACATGTCTT
CACGGATCGCACGTGCCCCGAGGCCAGGACATGATGAAGGGGCCAAGGTG
TACGAGACGCGGAGGTGA
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protein sequence of EsuBft1387_8a-0001

>EsuBft1387_8 ID=EsuBft1387_8|Name=EsuBft1387_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=105bp
MPQGERATRLEPVNQSGGGGVMPPYMKAILHIVRLASIHSLYIVGGDTFY
ARSEPGQPPEYCTVFHHMIKSAGSTIKRNLYMSSRIARAPRPGHDEGAKV
YETRR
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mRNA from alignment at Scaffold_630:466437..467542-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1387_8a-0001 ID=EsuBft1387_8a-0001|Name=EsuBft1387_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1106bp|location=Sequence derived from alignment at Scaffold_630:466437..467542- (Ectocarpus subulatus male Bft15b)
ATGCCTCAGGGCGAGCGAGCAACGCGTCTGGAACCCGTGAATCAATCTGG
TGGAGGAGGAGTGATGCCGCCGTACATGAAGGCGATTTTACATATCGTCC
GGTTGGCCTCCATTCATTCATTGTATATAGTTGGCGGTGATACGGTGAGG
GTCGGACTACTCCAGTACACGCCTGGCAAGAAGACGAAGCGAGAATGGCT
TTCGCCTTCTCTGTTGTCACTCTGCATGCTATGCTCGGAAGTGGAAGAAA
ACTGGTAAAGAACTGGCATGGCCAACCAAGAGTGAAATGACAAACCTCAC
GCGCAACCAATGATCGCCTACAAAAACGCCGAATTTTCCAACTCCTCAAA
TGTGAACACGATAGATAGCGCGCAGTACGTCAGATTCGCCAGGGTTTGCC
CACACACCTTGCTGGCATCGTTCGGTCTTCAGAAAGCCCCTGTCATTGTG
TTGCTATGTAGAGTAGCTTCTACTAGCCTGTGTGCCGCTGCAGCAGCCAC
GCACAGGGCGTTATAGGCCGTGCAAGGTCCCTTGCTGCTGTCATATCTGT
AGGCAGAGCCATGACCGTCAAGGATATGTAACTAAAGCGACAACGAGGAA
GATGACGAGGACACAGGAAATGAATTTGTGTCCTCGTAATGTACAAGGGT
TGGTGCCAAGGACTTACCCCGCCCTCGTATTCTTGTTATGATGCTGTTGT
CGATTTCCTCATTTTTGTTTAGTTCTACGCGAGGAGTGAACCCGGCCAGC
CGCCTGAATACTGCACGGTCTTCCACCACATGATAAAAAGCGCGGGATCC
ACCATTAAGCGCAACCTTTACATGTCTTCACGGATCGCACGTGCCCCGAG
GCCAGGTGCGACTACTGCATGTTGTAGAAGCCTTGGAAATATATTGCTTG
GAGCATCGAACCCCGTACTACTCGACATGCTTATGAAATTGTGTCAGTCC
TGGCCTTGGTCTATATTTTGGTTTCAAGGTACGAAGTAAAGGCGAACCCT
CTGCCCGGCGCTTCGCAGCCGCCTTCAGACGACGGTGTCGAAAGCATATC
CATTGCACATTTTAGGACATGATGAAGGGGCCAAGGTGTACGAGACGCGG
AGGTGA
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Coding sequence (CDS) from alignment at Scaffold_630:466437..467542-

>EsuBft1387_8a-0001 ID=EsuBft1387_8a-0001|Name=EsuBft1387_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=318bp|location=Sequence derived from alignment at Scaffold_630:466437..467542- (Ectocarpus subulatus male Bft15b)
ATGCCTCAGGGCGAGCGAGCAACGCGTCTGGAACCCGTGAATCAATCTGG
TGGAGGAGGAGTGATGCCGCCGTACATGAAGGCGATTTTACATATCGTCC
GGTTGGCCTCCATTCATTCATTGTATATAGTTGGCGGTGATACGTTCTAC
GCGAGGAGTGAACCCGGCCAGCCGCCTGAATACTGCACGGTCTTCCACCA
CATGATAAAAAGCGCGGGATCCACCATTAAGCGCAACCTTTACATGTCTT
CACGGATCGCACGTGCCCCGAGGCCAGGACATGATGAAGGGGCCAAGGTG
TACGAGACGCGGAGGTGA
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