EsuBft1387_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1387_3a-0001
Unique NameEsuBft1387_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:486428..488546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FSK2
ProteomeIdEsuBft1387_3
Protein domainsIPR006912
Protein domainsPTHR22930
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length137
Hectar predicted targeting categoryother localisation
Evalue3.42e-35
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionPlant transposon protein
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0016788
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1387_3aEsuBft1387_3aEctocarpus subulatus male Bft15bgeneScaffold_630 486428..488546 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1387_3a-0001-exonagat-exon-12274Ectocarpus subulatus male Bft15bexonScaffold_630 486428..487585 -
EsuBft1387_3a-0001-exonEsuBft1387_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 488335..488546 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1387_3a-0001-exonagat-three_prime_utr-3481Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 486428..487156 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1387_3a-0001-cdsEsuBft1387_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 487157..487585 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1387_3a-0001-exonagat-five_prime_utr-2294Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_630 488527..488546 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1387_3a-0001EsuBft1387_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 487157..488526 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1387_3a-0001 ID=EsuBft1387_3a-0001|Name=EsuBft1387_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1370bp|location=Sequence derived from alignment at Scaffold_630:486428..488546- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGCCGTCAGCCACGACATGCGTGTTTTGTCGTGTACGCGGGGCTTC
CACGGCGCCCAGAACGACAAGACCATCGTCAAGTTCGACAAGTTCGCGAC
GGAGGTTCGAAACGGCTGGTACAAGGACGTAGAGTACACTCTGAAGGGCG
AGGACGGAGGGGACATCAAAGAGAAAGGGCCATGGTTGATCGTGGACGGC
GGATATCACAACTGGAAGCAGCTCCAGAGTCCGATCAGGGTGCCATCAAC
CAAGGCCGAGTCGGGGTTCAAGAGACAGCTCGAGGGCGTCCGCAAGGACT
CGGAGTGCTGCTTCGGCGTCGTCAAGGGTCGGTTCAGGATCTGCAAGATG
CAGTTCCTCTACAGGAAGAAAGAGAGGATCGACAACACCTTCTTCACGTG
CATGATACTGCACAACATGCTTCTCGCCTACGACGGGATCGAGCTCTTGG
AGCCGTACTGCGACTGGGCCGGAGCGGACGGCGACCTCGACGAAGACATC
GTGCACCCTGACGTGCGGATGAGTGCGCCGGCCGTTGGTGACCACCTTCG
CTTACCGATGGGGACAGGGGACCGTTGGGTGGAAGAGGTCGTGATGAGCG
TTGAGAAGTCACATGCTGCTACGTTGACGGCGGGGAGGTAGGGGGGGGGG
CGTCGGCTGCAATTAGTGGCATTTTGGAATCAATCCCCCTGTTGAAGACT
ACATCCCTCTCCGGCGTCAGCATCGTCATGTTTCGTTTTTGGTTCTTGTT
ACCAAGTGTCGCCTTTGCCTTTGCCCTTGCCTGGCCTTCTTTACACTTTG
CCGTGTTGTTGTATCATTGTCGTATGTGGTCTACTGTATGAAATCGTGTC
TGGCCTGTTTCTGATTCCCTTCGAGTAATCCATACAACTGTCTGCGCATT
GGCATCAGATTTGGCCTCTGTGTCTCGGTGTATTATTTATCCTTTCTCGG
TCCATCTTTGCGCCTTTTTTGTTGAGGGGGGGTGGGACAGCCTCGAGGCT
AGGCGGAGTTTCCTTCGCTCTGCTGGCGGAAGACTGTTTGTTTAGCTTGT
TTTTCGCAGCATTATGTTTTTGGGTCGGAGTGGTTTGCTTTGTGTTCCCA
TGGCCTGACGCGTGCGTATGTACGTTACATTTGTTTACGGTACAACATAT
TTTTTGTTTTTGTTAAGTTTTTGCGGCGTCGGGTGTACCCAAATATGTGA
CCACAGGCTCCTATGGTTGTTTTGGAAAAGAGAGCTACAGATTAGTAATT
GTGAAGTGAGGACACAGGCTTCTGTCAGGGACAGGGGCCGTTGTCGCCGC
ATTTTAAACCCGCTGCCAAGGGCTGCTAGGGTTGAGGAATGTAGCGAGAG
GAACTAGATAAAGGAAGAGT
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protein sequence of EsuBft1387_3a-0001

>EsuBft1387_3 ID=EsuBft1387_3|Name=EsuBft1387_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=206bp
MRVLSCTRGFHGAQNDKTIVKFDKFATEVRNGWYKDVEYTLKGEDGGDIK
EKGPWLIVDGGYHNWKQLQSPIRVPSTKAESGFKRQLEGVRKDSECCFGV
VKGRFRICKMQFLYRKKERIDNTFFTCMILHNMLLAYDGIELLEPYCDWA
GADGDLDEDIVHPDVRMSAPAVGDHLRLPMGTGDRWVEEVVMSVEKSHAA
TLTAGR
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mRNA from alignment at Scaffold_630:486428..488546-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1387_3a-0001 ID=EsuBft1387_3a-0001|Name=EsuBft1387_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2119bp|location=Sequence derived from alignment at Scaffold_630:486428..488546- (Ectocarpus subulatus male Bft15b)
ATGTTGCCGTCAGCCACGACATGCGTGTTTTGTCGTGTACGCGGGGCTTC
CACGGCGCCCAGAACGACAAGACCATCGTCAAGTTCGACAAGTTCGCGAC
GGAGGTTCGAAACGGCTGGTACAAGGACGTAGAGTACACTCTGAAGGGCG
AGGACGGAGGGGACATCAAAGAGAAAGGGCCATGGTTGATCGTGGACGGC
GGATATCACAACGTGAGCGGACTCGTGTTCCACCGAATTTGTAGTGCAGA
TTGTCTTTGTTTGCACCCGGCGCGCGCCAAGTTTGGTGTTCCGTTTACTA
GCATTACGAAGCGTTTAGGAACACGAGACGAAACTACAGCGGGTCGCTAC
TGCTGTGTCTTCAGAACTACAGTTGTTGGCCCTTGACGCTTCCCCAACGT
GCTGCGCTACGGCACACGGGTTGCTATTGTTCATGTTCGGATGTGTTTAA
TGTATATCGCGATACGGCAGGTTTGCGTTATATACCATAGGTTGGTGGCT
GCTCCCTCGGGCAGGTGCATTGTTTTTTAGGTGAATGGACAGACAAACGC
TGTATATTCTATGCAAATGTGTCTCCAAAAGGGCGACGCAGTCCGCGCGG
TCCTCGCAATACGTCTGCGTGAAACGTTTCGGCAGTGTACTTGACAACCG
ACAATTTGGATGCTCTCCAAATGCTTCAACCGAAGAGTGCTCGTACGTGC
TTGTCTGCCTGCTTGTATGCGAGTTCGTGTATCTGTTGGCTTTTCCCCCG
CGACGATGGTGGTGGAGACTGAACCCCACCTTGTGTAATTTTCGGAATAT
CACGGTCGTCGTCGGGGTTAGACGTGATGGTAGTTCATGTGCTGGTCTGC
GGTAATCTTCAGCGGTCCCCATGTGCGTCTTCAAGGCTTGATTCAAATGT
CGTACCCATTCACTTTGTCCTCGCTCCCCGCCCACCCGCCATGGCCCCCA
TCCTTGCTCAGTGGAAGCAGCTCCAGAGTCCGATCAGGGTGCCATCAACC
AAGGCCGAGTCGGGGTTCAAGAGACAGCTCGAGGGCGTCCGCAAGGACTC
GGAGTGCTGCTTCGGCGTCGTCAAGGGTCGGTTCAGGATCTGCAAGATGC
AGTTCCTCTACAGGAAGAAAGAGAGGATCGACAACACCTTCTTCACGTGC
ATGATACTGCACAACATGCTTCTCGCCTACGACGGGATCGAGCTCTTGGA
GCCGTACTGCGACTGGGCCGGAGCGGACGGCGACCTCGACGAAGACATCG
TGCACCCTGACGTGCGGATGAGTGCGCCGGCCGTTGGTGACCACCTTCGC
TTACCGATGGGGACAGGGGACCGTTGGGTGGAAGAGGTCGTGATGAGCGT
TGAGAAGTCACATGCTGCTACGTTGACGGCGGGGAGGTAGGGGGGGGGGC
GTCGGCTGCAATTAGTGGCATTTTGGAATCAATCCCCCTGTTGAAGACTA
CATCCCTCTCCGGCGTCAGCATCGTCATGTTTCGTTTTTGGTTCTTGTTA
CCAAGTGTCGCCTTTGCCTTTGCCCTTGCCTGGCCTTCTTTACACTTTGC
CGTGTTGTTGTATCATTGTCGTATGTGGTCTACTGTATGAAATCGTGTCT
GGCCTGTTTCTGATTCCCTTCGAGTAATCCATACAACTGTCTGCGCATTG
GCATCAGATTTGGCCTCTGTGTCTCGGTGTATTATTTATCCTTTCTCGGT
CCATCTTTGCGCCTTTTTTGTTGAGGGGGGGTGGGACAGCCTCGAGGCTA
GGCGGAGTTTCCTTCGCTCTGCTGGCGGAAGACTGTTTGTTTAGCTTGTT
TTTCGCAGCATTATGTTTTTGGGTCGGAGTGGTTTGCTTTGTGTTCCCAT
GGCCTGACGCGTGCGTATGTACGTTACATTTGTTTACGGTACAACATATT
TTTTGTTTTTGTTAAGTTTTTGCGGCGTCGGGTGTACCCAAATATGTGAC
CACAGGCTCCTATGGTTGTTTTGGAAAAGAGAGCTACAGATTAGTAATTG
TGAAGTGAGGACACAGGCTTCTGTCAGGGACAGGGGCCGTTGTCGCCGCA
TTTTAAACCCGCTGCCAAGGGCTGCTAGGGTTGAGGAATGTAGCGAGAGG
AACTAGATAAAGGAAGAGT
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Coding sequence (CDS) from alignment at Scaffold_630:486428..488546-

>EsuBft1387_3a-0001 ID=EsuBft1387_3a-0001|Name=EsuBft1387_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=621bp|location=Sequence derived from alignment at Scaffold_630:486428..488546- (Ectocarpus subulatus male Bft15b)
ATGCGTGTTTTGTCGTGTACGCGGGGCTTCCACGGCGCCCAGAACGACAA
GACCATCGTCAAGTTCGACAAGTTCGCGACGGAGGTTCGAAACGGCTGGT
ACAAGGACGTAGAGTACACTCTGAAGGGCGAGGACGGAGGGGACATCAAA
GAGAAAGGGCCATGGTTGATCGTGGACGGCGGATATCACAACTGGAAGCA
GCTCCAGAGTCCGATCAGGGTGCCATCAACCAAGGCCGAGTCGGGGTTCA
AGAGACAGCTCGAGGGCGTCCGCAAGGACTCGGAGTGCTGCTTCGGCGTC
GTCAAGGGTCGGTTCAGGATCTGCAAGATGCAGTTCCTCTACAGGAAGAA
AGAGAGGATCGACAACACCTTCTTCACGTGCATGATACTGCACAACATGC
TTCTCGCCTACGACGGGATCGAGCTCTTGGAGCCGTACTGCGACTGGGCC
GGAGCGGACGGCGACCTCGACGAAGACATCGTGCACCCTGACGTGCGGAT
GAGTGCGCCGGCCGTTGGTGACCACCTTCGCTTACCGATGGGGACAGGGG
ACCGTTGGGTGGAAGAGGTCGTGATGAGCGTTGAGAAGTCACATGCTGCT
ACGTTGACGGCGGGGAGGTAG
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