EsuBft1387_16a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1387_16a-0001
Unique NameEsuBft1387_16a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:433269..435377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1387_16
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length180
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1387_16aEsuBft1387_16aEctocarpus subulatus male Bft15bgeneScaffold_630 433269..435377 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1387_16a-0001EsuBft1387_16Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 434766..434966 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1387_16a-0001-exonagat-exon-12291Ectocarpus subulatus male Bft15bexonScaffold_630 433269..434993 -
EsuBft1387_16a-0001-exonEsuBft1387_16a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 435303..435377 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1387_16a-0001-exonagat-three_prime_utr-3479Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 433269..434765 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1387_16a-0001-cdsEsuBft1387_16a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 434766..434966 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1387_16a-0001-exonagat-five_prime_utr-2292Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_630 434967..434993 -
EsuBft1387_16a-0001-exonagat-five_prime_utr-2293Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_630 435303..435377 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1387_16a-0001 ID=EsuBft1387_16a-0001|Name=EsuBft1387_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1800bp|location=Sequence derived from alignment at Scaffold_630:433269..435377- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GAGTACGAGTGGATGACTAGTGATTTTTAGGAAAGGGGTACGGTTCTCGT
GAGGGCGTGTGAGGGTTGTTCGGCGGAAACTGCAGCGAAGTTGTCTCCGC
GCATGAGGATCGGGTCACCCCTGATTTCTGGGCGGTCCCCCACTAATTCG
TGCATCACCCACGCCGTCATGACCATCCCGACAAGTTCAAGCAGATTGAT
CGTCACGCTACTCGTCTCGCGGCACGCGGCCTTGCGTTTTAGTTCTGCCG
AAAAGTCTAGTGGGAGGTCGTACCTCCAGTACGTTCGAAGTTCTGTGCAG
TAGCCGCCTATGGCGTCGAAGCTGGCATCGGATAAGTATTTTCTCTTCGG
TGGGCGCGCAAGTTGTACGAAACACGGGGCGCTCAGGGATTCCCCCGCAG
CTACGAGCTCATGCTGGATCGCCCATCGCCAAAACTCTAGATCAGCGTGG
AACTCCTTCCCGAGATCTACGATGTGGTTCTGGTTACCGTTCGCAGTGTG
CAAGCCTGTAAGGCGCAAGAGCCGCCAGACGAAGTACTTTCCAGCTCGAA
TCACAAACGTCATGTTCCAAAGTTTTCCAGCTATGCTGAAAACCTCTTGT
GCGGTCGCTTGCCGCCTATCTTTTGGCCACTCGTTTTCCAGGGCTGTTTT
TAGTGCCTGCGCCTTCTTTTCTGGCACGGAGATAGTGAGGGCGTGAGAAT
CGATGGTAAACCCCAGAAATTCAAGTTTGGTATCCCAGTCCGAACTCTTC
TTTGGGGCGAGGATAGGCGTCTCTCCAGCTTCGTGACCGAACGCACGTAC
GTAATCGGAGGCGAGGGACTGGGAGGCGATCAAGGCAGAACGGTCGGTAT
CGGAAAGTTGTGCTCTGAGCAGTGCGTGATCGTCGACATAAACCCAAGTC
TCGAAAGGGCTGTTCAGCTCGCCCCCTGTACTCGGCCGAATGACGACATC
GCTGGGTACCGGCGTGGGTTCTCCCTCTTCCCACCTATCCACAATCTTCA
CATGCTTCATCATGTCTACTCCTTCTGGAAGAATTTGTGCCGTGCTTAGG
TTGGTATTGCGGTGTGCGTGTTCAGCCGCCGACGCCGTGACTCCGAAATG
TCCAGGGGATCCCGTCCACCCAAACGGGAGTCTCAAGTCCACCACCAGCA
AGTCTCCTAGGGTGTAGCCAAAGTTGTGTGCTTGGTCTGGATTTATCCGG
ACGTTGCGAAAGGCATCGTTCACGTCGGTGGTGGCCATGAGCAGGCGTAG
CTTCGGGCATTTGGCTCGCAGGCTGACTAACGCGGTTAGGAAACCGGGCA
AGGCTCCGGCGCACAGGCACGGCGGAATGGTATCTGCATTAGTGTCTGCG
TTGAGACCCCCCTTTGTTGTTCTGTCTGTTGGGTTAAACGAGAGGTCGTT
AATCACTCTAGGCTTGTGCGTCACCACCACCCCGACAGGCGAGACTCTAA
GGTTAGGGATCTCGTGAGCTGAAGTTTTCTCCAACACCAGGCACCTTTCC
CTGCGTACATCGTTTCCAAGTTTTTCCCAAAGTAACGGCAGGTGTCCGTC
TGCTGAGGAGTGATTACCGTAACGCAGCGCACGCTCTAAGTCTGTGCTTG
AGGTCTCGGTGATAACCGGCACGCCCCCCGTAATGATAGTCATCAGTTCT
TCGATTTGTGGAAACCCCTTCCGCCTTCCGAAATAGTCTCTGACGGCTGC
GGGGTCTACTGGGGGGGTCACCATGTTACCACCCAAGCAGCGCGCTACGT
CGCCTATGCGTCCTCCGTGTTCGCGCATCATGCTCGTTCCCGTTTTTGCG
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protein sequence of EsuBft1387_16a-0001

>EsuBft1387_16 ID=EsuBft1387_16|Name=EsuBft1387_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=66bp
MRIGSPLISGRSPTNSCITHAVMTIPTSSSRLIVTLLVSRHAALRFSSAE
KSSGRSYLQYVRSSVQ
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mRNA from alignment at Scaffold_630:433269..435377-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1387_16a-0001 ID=EsuBft1387_16a-0001|Name=EsuBft1387_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2109bp|location=Sequence derived from alignment at Scaffold_630:433269..435377- (Ectocarpus subulatus male Bft15b)
GAGTACGAGTGGATGACTAGTGATTTTTAGGAAAGGGGTACGGTTCTCGT
GAGGGCGTGTGAGGGTTGTTCGGCGGTAAGCAGTTTCCACAACATGTTAT
CGTGGCGAGTGGTAATGTTCTTAGTCTGCAGTACTATCTCGCAGAGGCGT
TCTCCTGATTCCCCGATCGACTGTTCGCGCCAGTCATCTGTGTTAGTCAG
CTGCCTCACTTTCTCAGCTAGCTCTGCGCGGGGCCATCGGGAGATGCCGT
CCGCTAGTGTGTTCTCAACACCCGGGATGTGTTTTGCGTCGTATCTCCAA
CCCCCCCTGATTTCTAACCGGCCCATTGTTCTCATCATGAGGCCGGCGCG
CTTGTCTCTCGCGCCCCCGCATCGGTTTGACCAGGAAACTGCAGCGAAGT
TGTCTCCGCGCATGAGGATCGGGTCACCCCTGATTTCTGGGCGGTCCCCC
ACTAATTCGTGCATCACCCACGCCGTCATGACCATCCCGACAAGTTCAAG
CAGATTGATCGTCACGCTACTCGTCTCGCGGCACGCGGCCTTGCGTTTTA
GTTCTGCCGAAAAGTCTAGTGGGAGGTCGTACCTCCAGTACGTTCGAAGT
TCTGTGCAGTAGCCGCCTATGGCGTCGAAGCTGGCATCGGATAAGTATTT
TCTCTTCGGTGGGCGCGCAAGTTGTACGAAACACGGGGCGCTCAGGGATT
CCCCCGCAGCTACGAGCTCATGCTGGATCGCCCATCGCCAAAACTCTAGA
TCAGCGTGGAACTCCTTCCCGAGATCTACGATGTGGTTCTGGTTACCGTT
CGCAGTGTGCAAGCCTGTAAGGCGCAAGAGCCGCCAGACGAAGTACTTTC
CAGCTCGAATCACAAACGTCATGTTCCAAAGTTTTCCAGCTATGCTGAAA
ACCTCTTGTGCGGTCGCTTGCCGCCTATCTTTTGGCCACTCGTTTTCCAG
GGCTGTTTTTAGTGCCTGCGCCTTCTTTTCTGGCACGGAGATAGTGAGGG
CGTGAGAATCGATGGTAAACCCCAGAAATTCAAGTTTGGTATCCCAGTCC
GAACTCTTCTTTGGGGCGAGGATAGGCGTCTCTCCAGCTTCGTGACCGAA
CGCACGTACGTAATCGGAGGCGAGGGACTGGGAGGCGATCAAGGCAGAAC
GGTCGGTATCGGAAAGTTGTGCTCTGAGCAGTGCGTGATCGTCGACATAA
ACCCAAGTCTCGAAAGGGCTGTTCAGCTCGCCCCCTGTACTCGGCCGAAT
GACGACATCGCTGGGTACCGGCGTGGGTTCTCCCTCTTCCCACCTATCCA
CAATCTTCACATGCTTCATCATGTCTACTCCTTCTGGAAGAATTTGTGCC
GTGCTTAGGTTGGTATTGCGGTGTGCGTGTTCAGCCGCCGACGCCGTGAC
TCCGAAATGTCCAGGGGATCCCGTCCACCCAAACGGGAGTCTCAAGTCCA
CCACCAGCAAGTCTCCTAGGGTGTAGCCAAAGTTGTGTGCTTGGTCTGGA
TTTATCCGGACGTTGCGAAAGGCATCGTTCACGTCGGTGGTGGCCATGAG
CAGGCGTAGCTTCGGGCATTTGGCTCGCAGGCTGACTAACGCGGTTAGGA
AACCGGGCAAGGCTCCGGCGCACAGGCACGGCGGAATGGTATCTGCATTA
GTGTCTGCGTTGAGACCCCCCTTTGTTGTTCTGTCTGTTGGGTTAAACGA
GAGGTCGTTAATCACTCTAGGCTTGTGCGTCACCACCACCCCGACAGGCG
AGACTCTAAGGTTAGGGATCTCGTGAGCTGAAGTTTTCTCCAACACCAGG
CACCTTTCCCTGCGTACATCGTTTCCAAGTTTTTCCCAAAGTAACGGCAG
GTGTCCGTCTGCTGAGGAGTGATTACCGTAACGCAGCGCACGCTCTAAGT
CTGTGCTTGAGGTCTCGGTGATAACCGGCACGCCCCCCGTAATGATAGTC
ATCAGTTCTTCGATTTGTGGAAACCCCTTCCGCCTTCCGAAATAGTCTCT
GACGGCTGCGGGGTCTACTGGGGGGGTCACCATGTTACCACCCAAGCAGC
GCGCTACGTCGCCTATGCGTCCTCCGTGTTCGCGCATCATGCTCGTTCCC
GTTTTTGCG
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Coding sequence (CDS) from alignment at Scaffold_630:433269..435377-

>EsuBft1387_16a-0001 ID=EsuBft1387_16a-0001|Name=EsuBft1387_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=201bp|location=Sequence derived from alignment at Scaffold_630:433269..435377- (Ectocarpus subulatus male Bft15b)
ATGAGGATCGGGTCACCCCTGATTTCTGGGCGGTCCCCCACTAATTCGTG
CATCACCCACGCCGTCATGACCATCCCGACAAGTTCAAGCAGATTGATCG
TCACGCTACTCGTCTCGCGGCACGCGGCCTTGCGTTTTAGTTCTGCCGAA
AAGTCTAGTGGGAGGTCGTACCTCCAGTACGTTCGAAGTTCTGTGCAGTA
G
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