EsuBft1387_15a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1387_15a-0001
Unique Name	EsuBft1387_15a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_630	contig	Scaffold_630:435403..436921 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	42099.EPrPV00000023485
ProteomeId	EsuBft1387_15
Protein domains	IPR023109
Protein domains	IPR011010
Protein domains	IPR013762
Protein domains	IPR010998
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	121069\|Pythiales
Length	151
Hectar predicted targeting category	other localisation
Evalue	1.8e-14
EggNOG OGs	2EEVD@1\|root,2SK6B@2759\|Eukaryota,1MIKK@121069\|Pythiales
Date last modified	2016-06-14
Date creation	2016-06-14
Description	protein.. Source PGD
COG category	S

Cross References

External references for this mRNA


Database	Accession
GO	0003677
GO	0015074
GO	0006310

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1387_15a	EsuBft1387_15a	Ectocarpus subulatus male Bft15b	gene	Scaffold_630 435403..436921 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1387_15a-0001-exon	EsuBft1387_15a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 435403..436921 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1387_15a-0001-exon	agat-five_prime_utr-2291	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_630 435403..435447 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1387_15a-0001-cds	EsuBft1387_15a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_630 435448..436509 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1387_15a-0001-exon	agat-three_prime_utr-3478	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_630 436510..436921 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1387_15a-0001	EsuBft1387_15	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_630 435448..436509 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_630:435403..436921+
coding sequence from alignment at Scaffold_630:435403..436921+

spliced messenger RNA

>EsuBft1387_15a-0001 ID=EsuBft1387_15a-0001|Name=EsuBft1387_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1519bp|location=Sequence derived from alignment at Scaffold_630:435403..436921+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGGGGGGGGGGGGGGACGGAGGAGGCGACGGCTTTGGTGGATGCAATGGT
GCAAGCGTCCGTCGGGAGCGCCACGCACCAGCTCTATGCTGCTAAGTGGA
AAGCGTGGACGAAGTTCATGAGTAACAAGGGGATGGGCCCGTGGTTGCAC
CTCTTGGATGCGGCGGTCGTTATTAATACGTTGCTGGAGTTCATGGCCTG
CCGTTTGTTCGCTTTCGACAATCAGCTTTCCACGGTGAGGGGGTACCTGG
CCGCTGTAAAGTTTTTCCACAAGCTGCACCTAGGGTGGGAGGTACCAACT
TCTCACTGTTTGATTGTGGCGGCGGGGAAGGGGATAGCAAGAATTCGCGG
GGGCGTCGGAAAAAAGGCCCAAGTAAGGTTGCCCCTCACATGGTCGATGC
TAGCCCAGGGTTACCTCACTGTCTCAGAGTTCAAGGAAGGAGGGCGAGTG
ATGTGGCTGGGTCTAGCCTTGACCTATTTTCTGCTTTGCCGTGCGTCCGA
ATTATTCGCGTACGCGGACGGGTTAGTGCACCCGGAATTCTGCCTGACAC
GCAACAGTCTGACTTTCTACCGGGGAACAGAGCGGGTGGGCATAGAGGAC
CGAGCCCTGGCTGATTCCGTGCAGGTGGATTTCATTGCATCGAAAGGGGA
TCAGAACAGAGATGGTCGTTCAATCACCCGCGGGCGTAGCCCACTAGGAC
CCGACGGGGAGGTACCGGTAGGCGCGTTCGAGGCGGTGGTGGCTATCCTG
GACGTGCACCCCGAACTCCCGGGAAATGCACCTCTGCTGACCAGGCAGAC
GCCGAGCGGTTGGCGAGTGATTACTAGAACCGAAGGGGTAGCAGCGTTGA
GAGTGATGGTGGAAAGCATTGGCTTGAACCCTGCACACTTCGCGTTGCAC
TCGGGAAGGATCGGCGCTGCAACTCAGATGGCAGCGCAGGGCCTGTCGGC
GTTGCAAATCCAACACGCCGGCAGGTGGAAGTCACAGGCGTTCATGGTGT
ATGTCAGGGATACGGGGGCGGAGGGCGCCAAAGAGGTGTCAAGGGCTCTA
GCGCAGAAGGGAGAAGGAAAAGTAAGCAACGGCCTCTGCCTGCGAAATGG
AGAATGAGAGTCAAGTAGCCTCCGCTGGGCGGGGGTTACTTTTATGCCAG
GTTGGCAGAGTCCGTAAAAATTAGGAGAATACCGTGAGACGTGTAGAAGA
ATGGTACCCACGATGAGATGGGGTATGTATTTTTTGAGGTCAACACGGAG
TACGTTTTCCCGATTAACCTCGGCATAGGGTAGAAAAATAATACCAGAAT
TGTTGAGCAATAACCAAAATGTAGCGTTCTGAAGCAAAGCGGTGTTTGGT
GGAGGCGTGTCGGAATTCGACTTCAAGGGGATAGAGCTGAAGCGTCCCCT
GGTGGGGGAGCGAACGCTCGTGCAGTCTGTTTGCGTTCGATTGGACAAGC
ACACCAAGAAAACACCACGAGGTAGTGCCCAGCACGGAGAAGAGTTTGGA
CGTAGGGCTTGATCGATTT

protein sequence of EsuBft1387_15a-0001

>EsuBft1387_15 ID=EsuBft1387_15|Name=EsuBft1387_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=353bp
MVQASVGSATHQLYAAKWKAWTKFMSNKGMGPWLHLLDAAVVINTLLEFM
ACRLFAFDNQLSTVRGYLAAVKFFHKLHLGWEVPTSHCLIVAAGKGIARI
RGGVGKKAQVRLPLTWSMLAQGYLTVSEFKEGGRVMWLGLALTYFLLCRA
SELFAYADGLVHPEFCLTRNSLTFYRGTERVGIEDRALADSVQVDFIASK
GDQNRDGRSITRGRSPLGPDGEVPVGAFEAVVAILDVHPELPGNAPLLTR
QTPSGWRVITRTEGVAALRVMVESIGLNPAHFALHSGRIGAATQMAAQGL
SALQIQHAGRWKSQAFMVYVRDTGAEGAKEVSRALAQKGEGKVSNGLCLR
NGE

mRNA from alignment at Scaffold_630:435403..436921+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1387_15a-0001 ID=EsuBft1387_15a-0001|Name=EsuBft1387_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1519bp|location=Sequence derived from alignment at Scaffold_630:435403..436921+ (Ectocarpus subulatus male Bft15b)
GGGGGGGGGGGGGGGACGGAGGAGGCGACGGCTTTGGTGGATGCAATGGT
GCAAGCGTCCGTCGGGAGCGCCACGCACCAGCTCTATGCTGCTAAGTGGA
AAGCGTGGACGAAGTTCATGAGTAACAAGGGGATGGGCCCGTGGTTGCAC
CTCTTGGATGCGGCGGTCGTTATTAATACGTTGCTGGAGTTCATGGCCTG
CCGTTTGTTCGCTTTCGACAATCAGCTTTCCACGGTGAGGGGGTACCTGG
CCGCTGTAAAGTTTTTCCACAAGCTGCACCTAGGGTGGGAGGTACCAACT
TCTCACTGTTTGATTGTGGCGGCGGGGAAGGGGATAGCAAGAATTCGCGG
GGGCGTCGGAAAAAAGGCCCAAGTAAGGTTGCCCCTCACATGGTCGATGC
TAGCCCAGGGTTACCTCACTGTCTCAGAGTTCAAGGAAGGAGGGCGAGTG
ATGTGGCTGGGTCTAGCCTTGACCTATTTTCTGCTTTGCCGTGCGTCCGA
ATTATTCGCGTACGCGGACGGGTTAGTGCACCCGGAATTCTGCCTGACAC
GCAACAGTCTGACTTTCTACCGGGGAACAGAGCGGGTGGGCATAGAGGAC
CGAGCCCTGGCTGATTCCGTGCAGGTGGATTTCATTGCATCGAAAGGGGA
TCAGAACAGAGATGGTCGTTCAATCACCCGCGGGCGTAGCCCACTAGGAC
CCGACGGGGAGGTACCGGTAGGCGCGTTCGAGGCGGTGGTGGCTATCCTG
GACGTGCACCCCGAACTCCCGGGAAATGCACCTCTGCTGACCAGGCAGAC
GCCGAGCGGTTGGCGAGTGATTACTAGAACCGAAGGGGTAGCAGCGTTGA
GAGTGATGGTGGAAAGCATTGGCTTGAACCCTGCACACTTCGCGTTGCAC
TCGGGAAGGATCGGCGCTGCAACTCAGATGGCAGCGCAGGGCCTGTCGGC
GTTGCAAATCCAACACGCCGGCAGGTGGAAGTCACAGGCGTTCATGGTGT
ATGTCAGGGATACGGGGGCGGAGGGCGCCAAAGAGGTGTCAAGGGCTCTA
GCGCAGAAGGGAGAAGGAAAAGTAAGCAACGGCCTCTGCCTGCGAAATGG
AGAATGAGAGTCAAGTAGCCTCCGCTGGGCGGGGGTTACTTTTATGCCAG
GTTGGCAGAGTCCGTAAAAATTAGGAGAATACCGTGAGACGTGTAGAAGA
ATGGTACCCACGATGAGATGGGGTATGTATTTTTTGAGGTCAACACGGAG
TACGTTTTCCCGATTAACCTCGGCATAGGGTAGAAAAATAATACCAGAAT
TGTTGAGCAATAACCAAAATGTAGCGTTCTGAAGCAAAGCGGTGTTTGGT
GGAGGCGTGTCGGAATTCGACTTCAAGGGGATAGAGCTGAAGCGTCCCCT
GGTGGGGGAGCGAACGCTCGTGCAGTCTGTTTGCGTTCGATTGGACAAGC
ACACCAAGAAAACACCACGAGGTAGTGCCCAGCACGGAGAAGAGTTTGGA
CGTAGGGCTTGATCGATTT

Coding sequence (CDS) from alignment at Scaffold_630:435403..436921+

>EsuBft1387_15a-0001 ID=EsuBft1387_15a-0001|Name=EsuBft1387_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1062bp|location=Sequence derived from alignment at Scaffold_630:435403..436921+ (Ectocarpus subulatus male Bft15b)
ATGGTGCAAGCGTCCGTCGGGAGCGCCACGCACCAGCTCTATGCTGCTAA
GTGGAAAGCGTGGACGAAGTTCATGAGTAACAAGGGGATGGGCCCGTGGT
TGCACCTCTTGGATGCGGCGGTCGTTATTAATACGTTGCTGGAGTTCATG
GCCTGCCGTTTGTTCGCTTTCGACAATCAGCTTTCCACGGTGAGGGGGTA
CCTGGCCGCTGTAAAGTTTTTCCACAAGCTGCACCTAGGGTGGGAGGTAC
CAACTTCTCACTGTTTGATTGTGGCGGCGGGGAAGGGGATAGCAAGAATT
CGCGGGGGCGTCGGAAAAAAGGCCCAAGTAAGGTTGCCCCTCACATGGTC
GATGCTAGCCCAGGGTTACCTCACTGTCTCAGAGTTCAAGGAAGGAGGGC
GAGTGATGTGGCTGGGTCTAGCCTTGACCTATTTTCTGCTTTGCCGTGCG
TCCGAATTATTCGCGTACGCGGACGGGTTAGTGCACCCGGAATTCTGCCT
GACACGCAACAGTCTGACTTTCTACCGGGGAACAGAGCGGGTGGGCATAG
AGGACCGAGCCCTGGCTGATTCCGTGCAGGTGGATTTCATTGCATCGAAA
GGGGATCAGAACAGAGATGGTCGTTCAATCACCCGCGGGCGTAGCCCACT
AGGACCCGACGGGGAGGTACCGGTAGGCGCGTTCGAGGCGGTGGTGGCTA
TCCTGGACGTGCACCCCGAACTCCCGGGAAATGCACCTCTGCTGACCAGG
CAGACGCCGAGCGGTTGGCGAGTGATTACTAGAACCGAAGGGGTAGCAGC
GTTGAGAGTGATGGTGGAAAGCATTGGCTTGAACCCTGCACACTTCGCGT
TGCACTCGGGAAGGATCGGCGCTGCAACTCAGATGGCAGCGCAGGGCCTG
TCGGCGTTGCAAATCCAACACGCCGGCAGGTGGAAGTCACAGGCGTTCAT
GGTGTATGTCAGGGATACGGGGGCGGAGGGCGCCAAAGAGGTGTCAAGGG
CTCTAGCGCAGAAGGGAGAAGGAAAAGTAAGCAACGGCCTCTGCCTGCGA
AATGGAGAATGA