EsuBft1387_14a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1387_14a-0001
Unique Name	EsuBft1387_14a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_630	contig	Scaffold_630:438681..440332 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	44056.XP_009041040.1
ProteomeId	EsuBft1387_14
Protein domains	IPR006912
Protein domains	PTHR22930
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	165
Evalue	6.52e-22
EggNOG OGs	2E2RF@1\|root,2S9YA@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Plant transposon protein
COG category	S

Cross References

External references for this mRNA


Database	Accession
GO	0016788

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1387_14a	EsuBft1387_14a	Ectocarpus subulatus male Bft15b	gene	Scaffold_630 438681..440332 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1387_14a-0001-exon	EsuBft1387_14a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 438681..440332 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1387_14a-0001-exon	agat-five_prime_utr-2290	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_630 438681..438700 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1387_14a-0001-cds	EsuBft1387_14a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_630 438701..439027 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1387_14a-0001-exon	agat-three_prime_utr-3477	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_630 439028..440332 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1387_14a-0001	EsuBft1387_14	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_630 438701..439027 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_630:438681..440332+
coding sequence from alignment at Scaffold_630:438681..440332+

spliced messenger RNA

>EsuBft1387_14a-0001 ID=EsuBft1387_14a-0001|Name=EsuBft1387_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1652bp|location=Sequence derived from alignment at Scaffold_630:438681..440332+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCGGAGGTCACCGGCATGGGCGAGGCCACGGTGAACCAACTGTTC
CACAAGTTCACGGAGAGATTCGCGCGTGAGTTTTTTCCGGTATGGGTGAG
GATGCCGAACGAAGACGAGCTGAAGGAGATCATGAAAACCTATGACGAGG
TTGGAATGACGGGCGCCATGGGATCGATGGATGGGACGCATCTTCAGTGG
ACGGTGTGTCCTTATTCGGAACGCTCGTCGCACGTTGGCAAGGAAGGCTA
CGCTACCCTCGTGTACAATGTTGCCGTCAGCCACGACATGCGTGTTTTGT
CGTGTACGCGGGGCTTCCCCGGCGCCCAGAACGACAAGACCATCNNNNNN
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NNNNNNNNNNNNNNTTCGTTTTTGGTTCTTGTTACCAAGTGTCGCCTTTG
CCTTTGCCCTTGCCTGGCCTTCTTTACACTTTGCCGTGTTGTTGTATCAT
TGTTGTATGTGGTCTACTTTATGAAATCGTGTCTGGCCTGTTTCCGATTC
CCTTTGAGTAATCCATACAACTGTCTTTTGAGCATTGGCATCAGATTTGG
CCTCTGTGTCTCGGTGTATTATTTTTCCTTTCTCGGTCCATCTTTGCGCC
TTTCTTGTTGAGGGGGGGTGGGACAGCCTCTAGGCTAGGCGGAGTTTTCT
TC

protein sequence of EsuBft1387_14a-0001

>EsuBft1387_14 ID=EsuBft1387_14|Name=EsuBft1387_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=109bp
MGEATVNQLFHKFTERFAREFFPVWVRMPNEDELKEIMKTYDEVGMTGAM
GSMDGTHLQWTVCPYSERSSHVGKEGYATLVYNVAVSHDMRVLSCTRGFP
GAQNDKTIX

mRNA from alignment at Scaffold_630:438681..440332+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1387_14a-0001 ID=EsuBft1387_14a-0001|Name=EsuBft1387_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1652bp|location=Sequence derived from alignment at Scaffold_630:438681..440332+ (Ectocarpus subulatus male Bft15b)
ATGTCTCGGAGGTCACCGGCATGGGCGAGGCCACGGTGAACCAACTGTTC
CACAAGTTCACGGAGAGATTCGCGCGTGAGTTTTTTCCGGTATGGGTGAG
GATGCCGAACGAAGACGAGCTGAAGGAGATCATGAAAACCTATGACGAGG
TTGGAATGACGGGCGCCATGGGATCGATGGATGGGACGCATCTTCAGTGG
ACGGTGTGTCCTTATTCGGAACGCTCGTCGCACGTTGGCAAGGAAGGCTA
CGCTACCCTCGTGTACAATGTTGCCGTCAGCCACGACATGCGTGTTTTGT
CGTGTACGCGGGGCTTCCCCGGCGCCCAGAACGACAAGACCATCNNNNNN
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NNNNNNNNNNNNNNTTCGTTTTTGGTTCTTGTTACCAAGTGTCGCCTTTG
CCTTTGCCCTTGCCTGGCCTTCTTTACACTTTGCCGTGTTGTTGTATCAT
TGTTGTATGTGGTCTACTTTATGAAATCGTGTCTGGCCTGTTTCCGATTC
CCTTTGAGTAATCCATACAACTGTCTTTTGAGCATTGGCATCAGATTTGG
CCTCTGTGTCTCGGTGTATTATTTTTCCTTTCTCGGTCCATCTTTGCGCC
TTTCTTGTTGAGGGGGGGTGGGACAGCCTCTAGGCTAGGCGGAGTTTTCT
TC

Coding sequence (CDS) from alignment at Scaffold_630:438681..440332+

>EsuBft1387_14a-0001 ID=EsuBft1387_14a-0001|Name=EsuBft1387_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=327bp|location=Sequence derived from alignment at Scaffold_630:438681..440332+ (Ectocarpus subulatus male Bft15b)
ATGGGCGAGGCCACGGTGAACCAACTGTTCCACAAGTTCACGGAGAGATT
CGCGCGTGAGTTTTTTCCGGTATGGGTGAGGATGCCGAACGAAGACGAGC
TGAAGGAGATCATGAAAACCTATGACGAGGTTGGAATGACGGGCGCCATG
GGATCGATGGATGGGACGCATCTTCAGTGGACGGTGTGTCCTTATTCGGA
ACGCTCGTCGCACGTTGGCAAGGAAGGCTACGCTACCCTCGTGTACAATG
TTGCCGTCAGCCACGACATGCGTGTTTTGTCGTGTACGCGGGGCTTCCCC
GGCGCCCAGAACGACAAGACCATCNNN