EsuBft1387_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1387_12a-0001
Unique NameEsuBft1387_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:450216..451054 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1387_12
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length54
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1387_12aEsuBft1387_12aEctocarpus subulatus male Bft15bgeneScaffold_630 450216..451054 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1387_12a-0001-exonEsuBft1387_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 450216..450718 -
EsuBft1387_12a-0001-exonagat-exon-12287Ectocarpus subulatus male Bft15bexonScaffold_630 451010..451054 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1387_12a-0001-exonagat-three_prime_utr-3476Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 450216..450670 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1387_12a-0001-cdsEsuBft1387_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 450671..450718 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1387_12a-0001EsuBft1387_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 450671..451054 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1387_12a-0001 ID=EsuBft1387_12a-0001|Name=EsuBft1387_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=548bp|location=Sequence derived from alignment at Scaffold_630:450216..451054- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCTCGATGATATCAACACAGACGGCCGAGGTCAAGTCCCTGGCTC
GGGGCTCATGGCGACCAAGAAGGGCAAGACAAACGGCACTTAGAGCTTCG
TAGTGCACGACAGCTGGCCATCGCTAATCGGTACCGCACGCCACCGCCGA
GAGACACTGGGATCTCTCCGAGGTAGAGCTCGCCCGTGCCCTTCTTGATG
GAGGAACTCTTTGAGTCCTCCGATTTGGGGGTGATCTAAGCGGGCGGCGC
GGCACGAAGCCCGACGGCTGAGCTGTGCCGTCCCGTTTCGTGCTCAAACT
GCGCGCAGGGTCTGTATCGTACATGTTCTGTACTGGTCAGGCGTACTGTA
CGACATCAGACCGCCCGACGGGCTCTACTGTTGTCTCCCGATTTAGTTGT
CGCACGACTTCGATTTGGGTGTTTTTTGAATGGTATCACGTACCGTTGGG
AGGCTCAATCGTCCGAAACTGCTACTGTACGACAGTTTCGTCCCGCCTGG
AATCATTTGAAGGGAGACTTGTGTTTAGTAGCAGAGACACGTTAGGAT
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protein sequence of EsuBft1387_12a-0001

>EsuBft1387_12 ID=EsuBft1387_12|Name=EsuBft1387_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=30bp
MTLDDINTDGRGQVPGSGLMATKKGKTNGT
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mRNA from alignment at Scaffold_630:450216..451054-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1387_12a-0001 ID=EsuBft1387_12a-0001|Name=EsuBft1387_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=839bp|location=Sequence derived from alignment at Scaffold_630:450216..451054- (Ectocarpus subulatus male Bft15b)
ATGACGCTCGATGATATCAACACAGACGGCCGAGGTCAAGTCCCTGTATC
TTTCCCGTGATGATTCTGTACAGTCCCATCGCTTGTTTGCCATGCCTCGC
ACGTCCCCTGATCCCATGGCGACCTGTCCCGGCCATGTTTCAGTGCCCAC
GAGATCTGGTAGCCCGGGCTGCATGATAACGTAGCCCTGTCCTTTTCCTT
CCTACTGTTTCTGTCTCGCGTTTTTCGTCATGTTTCTCCTCGTAGTGAGA
TATCCCAGGCACCATACGAATCATTTTGCGGGAACCTCTTAAGATACAGA
AGAAAGCAAGCACTGCCGTGGAACCACCGTACATAGGGCTCGGGGCTCAT
GGCGACCAAGAAGGGCAAGACAAACGGCACTTAGAGCTTCGTAGTGCACG
ACAGCTGGCCATCGCTAATCGGTACCGCACGCCACCGCCGAGAGACACTG
GGATCTCTCCGAGGTAGAGCTCGCCCGTGCCCTTCTTGATGGAGGAACTC
TTTGAGTCCTCCGATTTGGGGGTGATCTAAGCGGGCGGCGCGGCACGAAG
CCCGACGGCTGAGCTGTGCCGTCCCGTTTCGTGCTCAAACTGCGCGCAGG
GTCTGTATCGTACATGTTCTGTACTGGTCAGGCGTACTGTACGACATCAG
ACCGCCCGACGGGCTCTACTGTTGTCTCCCGATTTAGTTGTCGCACGACT
TCGATTTGGGTGTTTTTTGAATGGTATCACGTACCGTTGGGAGGCTCAAT
CGTCCGAAACTGCTACTGTACGACAGTTTCGTCCCGCCTGGAATCATTTG
AAGGGAGACTTGTGTTTAGTAGCAGAGACACGTTAGGAT
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Coding sequence (CDS) from alignment at Scaffold_630:450216..451054-

>EsuBft1387_12a-0001 ID=EsuBft1387_12a-0001|Name=EsuBft1387_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=93bp|location=Sequence derived from alignment at Scaffold_630:450216..451054- (Ectocarpus subulatus male Bft15b)
ATGACGCTCGATGATATCAACACAGACGGCCGAGGTCAAGTCCCTGGCTC
GGGGCTCATGGCGACCAAGAAGGGCAAGACAAACGGCACTTAG
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