EsuBft1371_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1371_4a-0001
Unique NameEsuBft1371_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_392contigScaffold_392:95987..101858 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1371_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Length22
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1371_4aEsuBft1371_4aEctocarpus subulatus male Bft15bgeneScaffold_392 95987..101858 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1371_4a-0001EsuBft1371_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_392 95987..101750 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1371_4a-0001-exonagat-exon-32221Ectocarpus subulatus male Bft15bexonScaffold_392 95987..95992 +
EsuBft1371_4a-0001-exonagat-exon-32224Ectocarpus subulatus male Bft15bexonScaffold_392 97497..97508 +
EsuBft1371_4a-0001-exonEsuBft1371_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_392 97896..97902 +
EsuBft1371_4a-0001-exonagat-exon-32222Ectocarpus subulatus male Bft15bexonScaffold_392 98837..98859 +
EsuBft1371_4a-0001-exonagat-exon-32223Ectocarpus subulatus male Bft15bexonScaffold_392 101682..101858 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1371_4a-0001-cdsEsuBft1371_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_392 95987..95992 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1371_4a-0001-exonagat-three_prime_utr-3345Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_392 101751..101858 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1371_4a-0001 ID=EsuBft1371_4a-0001|Name=EsuBft1371_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=225bp|location=Sequence derived from alignment at Scaffold_392:95987..101858+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAGGGGTGTGAATGAGGAGGACCTCTTCGTGGACGTGGGCCTGAT
ATACTCGCAGCAGTATCTGGTCGTGAGGATCCCAGGGGGATACGTGTTGG
GAATTTCGTGTGTTTAAGGGTACCACCGGTGCAGTCACGGGGACCCTTTA
GGCGTGGTTGGAGCGATGATGAGGCTTGCGTGCGTGCTGCGCGCTTCTTC
TTCCCTCTCTCTCTCCACCGCCACC
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protein sequence of EsuBft1371_4a-0001

>EsuBft1371_4 ID=EsuBft1371_4|Name=EsuBft1371_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=38bp
MKRGVNEEDLFVDVGLIYSQQYLVVRIPGGYVLGISCV
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mRNA from alignment at Scaffold_392:95987..101858+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1371_4a-0001 ID=EsuBft1371_4a-0001|Name=EsuBft1371_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5872bp|location=Sequence derived from alignment at Scaffold_392:95987..101858+ (Ectocarpus subulatus male Bft15b)
ATGAAGGTATACCAGCGTCTGCCAGTACCGTCGTCACTCACCTCTTTCAT
GTATCGTGCCGCATTCCTAACTTCTTCCACGTTCGAAGTGCCACAGTTCT
TGCTCTTTGCGCTTCATTGATGGAGGCTTTGGCGAAAATCTCTGTCCTCA
CCAGTGCAGCCGTTCACGTCGTCTGAGACCTGCACGAAACGTCACGAAGC
AGGGAGAATCACCGATTAAGACGAGCATTTTTCCCAAAAACGTGGTCTTG
AATATGTTCGAAGCAATGCGCGCAAGGAGGTAGTGTCTTTTCTATTTACT
GTGTTAGATATACTCGCAGCAGTATCTGGTCGTGAGGATCCCAGGGGGAT
ACGTGTTGGGAATTTCGTGTGTTTAAGGGTACCACCGGCGCAGTCACGGG
ACCCTTTAGGCGTGGTTGGTGCGATGATGAGGCTTGCGTGCGTGCTCTTT
TCCTCTCGCTCTCCACCACCACCACCGTCTCTCTCCAATCAAGTTTCCTT
CTCCCACTCTCTCTCCAACTCTCTCTCAACCTCTCCCTCGGCCTAACACG
GCCGACTACCCAGTGCGCCAAAGTAACGTTCAGAACGTGCTTGCTGCACC
CCGCCTAGTATATCTTTCAACTAGTGTGCCGATACCACGGTATCTGCGCG
CGGGCGTAGCCTTCCGGGGGTTGTGAAGTCACGCGCAATCGGTAGACTCC
CACAACAACAGACACCATGGAGGGNGCGAAGGTGAAGTCACCTACGCCCC
ACCACCATCAGCCGGCAACCCAGTCCCACCTACCGGCAGCCAGCCATCAC
CCTCCAGCCAGGGTAAAACAGCTACCTTAACGACCCCAGCAGCGTCGCAC
ACATCGTGGCACAAGCGGCCGAGGCGACAGCTGACGCCATCGCTGAACAA
CAGGGCTTTGCCCGCTCAGGCACGTTACGTGTCAATCCTTGCTCAGAAAT
AGAACCTTGGCTTGGTAGCGTGAAGAATGAGCAGGACTTGAATATTATGT
TTGATATTTGTCGTAGTGAGATGATTTCATGTTTCAGGAGGAGGGTGTGC
ACGATGCGTTGGAACTGGAGATTGNAACTAAAACAAAAAGTGGTGGAGAT
CGTCCAGCAACGAGTACAAGCCGAACTTGAAGCCAACAGGATCAGCGAAG
GTGAAGTCACCTACGCCCCACCACCATCAGCCGGCAACCCAGTCCCACCT
ACCGGCAGCCAGCCATCACCCTCCAGCCAGGGTAAAACAGCTACCTTAAC
GACCCCAGCAGCGTCGCACACATCGTGGCACAAGCGGCCGAGGCGACAGC
TGACGCCATCGCTGAACAACAGGGCTTTGCCCGCTCAGGCACGTTACGTG
TCAATCCTTGCTCAGAAATAGAACCTTGGCTTGGTAGCGTGAAGAATGAG
CAGGACTTGAATATTATGTTTGATATTTGTCGTAGTGAGATGATTTCATG
TTTCAGGAGGAGGGTGTGCACGATGCGTTGGAACTGGAGATTGAGGCCAA
GGTGGGGAAGAGGGGTGTGAATGTAGGAGACCTTCGGAGACTTTTTGGTA
ATGAAGAGGTGGACAAGTCTTTCAAACTGTGGAACATCCGTATTAGCAAG
GTTTTGTATCCCCCGATTCAGAGCTTGATTCTGGCGTGTGAGAGTCCCCG
AAAAGACTGGAAAATCGTGACAGAGTTCTATCAGGAGAAAAAGCAGTCAG
AAAAGTCGAGGTTGGAGCAAGACTGGAAGGAGTTGGAGATGAGAGAGTCC
GAGAGGCCACAGGATTACATTGCCCGCTCAGAGGCCCTTCGCCTGCGTCT
CGCATCTGTAGGCACGATTAAGGATGAAACAGATGCCAACAAAGACATTG
CTCGTGGCCTTNAATATTATGTTTGATATTTGTCGTAGTGAGATGATTTC
ATGTTTCAGGAGGAGGGTGTGCACGATGCGTTGGAACTGGAGATTGAGGC
CAAGGTGGGGAAGAGGGGTGTGAATGTAGGAGACCTTCGGAGACTTTTTG
GTAATGAAGAGGTGGACAAGTCTTTCAAACTGTGGAACATCCGTATTAGC
AAGGTTTTGTATCCCCCGATTCAGAGCTTGATTCTGGCGTGTGAGAGTCC
CCGAAAAGACTGGAAAATCGTGACAGAGTTCTATCAGGAGAAAAAGCAGT
CAGAAAAGTCGAGGTTGGAGCAAGACTGGAAGGAGTTGGAGATGAGAGAG
TCCGAGAGGCCACAGGATTACATTGCCCGCTCAGAGGCCCTTCGCCTGCG
TCTCGCATCTGTAGGCACGATTAAGGATGAAACAGATGCCAACAAAGACA
TTGCTCGTGGCCTTCCCTCTTCGTTGTATGCCGTGCAAAAATGGAACACT
GCTTGCCCATGATGTCCTGACGTTGCGTACCGTTGAGACGGTGGTGAGGG
ACGCCCACGTGGAGATGGAGCGCGAGAGGAGCAAGGGGGAGAGGCGCGAG
GTGTGTCCGGCATGGGCCGGCGCGGCGAGGGAAGTGGGGGAGCATACGGG
GGTCAAGACTGCGGTCAGGCAGCAGCTGGCGGCCGAAATCGTGACGGAGA
GAAGAAATATAGTGACGTGTTCAACGACGTCCCCGGCGGATTTTGCCGCT
ACCACCAGTCCGAGCTTCACACCAACGAGTAGTGTCGTCTCCAGCAGCAA
CTGCGGCGCGTGCGTTCGAGAGAGGGCGCCGAGGAACGCCGCTCGAGCGG
CGGCAGCCGCGGTGGCGGCGGTAGCCAGCGAGGGGGTAGACCGCCGCCGG
GGCCAGGCCGCGGTGGCGGCCGATCGGTGAGGCTAGAAGGGCAGCAGCAC
AACACCGGTCATGGTGGCGGTGGCTGGAGCCAAACCTCACCCCCCCCGAG
ACCTCTTCGTGGACGTGGGCCTGGTAGTCGTCTGGGGCGTCACCCAGGGG
GTCGTGGGCCGGCGGGACGCCACAGCAGCGACGGTCGTGCCGAGAGAGAA
CGGGCAGAGAGAGGCCCGGGGCACGTGCGTTCTGGCCACGAAAAAGAGCA
GGCGTACGTTGTGTTCGACGCCCACGATGATCGTGGCTACTACGAAGACT
ACGGCGACTACGACGACGGCTACTACTGCGAAGACGGCTACCACGACGCC
GGGTACGCCCACTACGCCGGCGGTGGGGACAGCTACAGCTACTCCTCAGG
GTATGAAGACAGCCGTTCATCTGACGGCGGCATCCACCACGTGTACTACC
CTCCTGCCGGCGAAGATTCGTCATCCGAGCAGCAACGTCAGCCCCCCCCC
GCTAGCAGCAGCACCACCGCTTCGTCCTTGTCCTCTACTCCTTCTCCTGG
AGCGCCTCCATTTTCGGGCTACCTCCACCTCTGCACGGCACAATCGGTGC
CCATAGGCATGCCTCACCCTGAAGATTTTCAGTAGGACAGGAGTGACGAT
TAGAGTAGAGCCTGCTGCGTCTGCTTCGTCTTTGCTGAGTGTAGAATCTA
GTGAGGGGCCGCCTGGTAGCGAGATGGGTAGCTGACTCAGGAGCCAGCAA
CAGTTTCACCAACAGCAGCCNTAGCAGCAGCACCACCGCTTCGTCCTTGT
CCTCTACTCCTTCTCCTGGAGCGCCTCCATTTTCGGGCTACCTCCACCTC
TGCACGGCACAATCGGTGCCCATAGGCATGCCTCACCCTGAAGATTTTCA
GTAGGACAGGAGTGACGATTAGAGTAGAGCCTGCTGCGTCTGCTTCGTCT
TTGCTGAGTGTAGAATCTAGTGAGGGGCCGCCTGGTAGCGAGATGGGTAG
CTGACTCAGGAGCCAGCAACAGTTTCACCAACAGCAGCCTACACATGTAT
GACCTGCAAGAGATCCCCGCCAGTAGGAATGTCGTTGTAGGTGATGGTAG
ACTGCTAGAAGTGCAAGCCATCGGTAGTATTAGTCTGGTAGTTCTTTGAG
GAGGATGAGAATGGTGAGAAAACGACGATGTGTGTGAAGCTCACTGACGT
GTCTNTTTATGGCTTGTTGGAAGCGGGGACTTTCACTCCGGCGAAGTAGC
AATAGTGGAGAACGCAATTAACGCTAAGTGGGTATTCGATTGGAAGGCAG
ATGAGTTTGGATGGCACACTAAGGTTAAGTGGAGACTTGTAGCGAGAGGT
GACATGCAGAGAGAGTACATTGACTTTGGAGGGTTGTNATTGTAGAGATC
CTGAGCTTCAACTTGTTCTCAACGCATGCTGTTTCTCTGAAGCAACCAAT
CCTCTACGACAAACGTGGTGCAACCCTCCAAAATGGACTGCTCTTTGCTA
GAGAGGATAAAGCGTCTGCAGCGTATGCCATCCGGTTGCCGTACGACCCA
TCTGCGACTATTGTAGACCCTGCTGCTTTGCCTGCATTNGCGTGCGAGTT
GAACCTCGACTTGTGTCATTTCGATATTGAGCAAGCTATTGTGCGTTCGG
AGTTGAAGACTTGTACATGCGTTTGCCGCAGGGATGTGGAGCTCTGTCTG
GAATCATTGTAAAACTAGGCAAGAGTCTGTATGCTTGAGACAGGCATCTA
GGCAGTGGCATGCAATGCTCAAGAGGTGTTTGGTGGCGTTAGGTTTTGAA
CAGTGCATGGCCGATGCTTGTGTGTTTCGTTTGATTGAGGATGGATGTGT
TGTTTTGATTTTGGTAGTACATGTAGATGACATTTTTGCTGTGGGAGAGA
GTGAGAGATGTGACAAGTTTGGCGCCGACCTTAACAAGTCCGTGCCGGTG
AAGAGCCTGGGAGAGTTGAGATGGTATTCAGGGTGCTATTTTGAGAGGGA
CAAGGAGACCGGTAGGTTGACGATTTCTCAGCAGACTTTCACGGATGAGC
TAGNTCCGTTTCGTGAGCTGGTAGGATCGTTGATGTGGCTGGCGACTCAG
ACTAGGCCAGACATTGCAAGGGCAGTAGCTAGGTATCGCGCATCTCCGAA
GCTGGTACACTGGAATGCAGCGATGGATATTTTAGGCTATGCGAGGAGGA
CGAGTCACTTTGGTATTTCGTTTCAGAGAGGTACGGTAGAGGGATTCAGC
TTGCAGGGGTACGCTGATGCGGACTTTGCAAGCAAGGCAGCAGACCATAG
GTCGGTATCAGGGGGGACCGTGACGTGTGGAGGAGGCCCTGTGTCTTGGT
TTTTTTCCAGAACGCAGAAGTGTGTCATGCTTTCGACCACCGAAGCAGAG
TACGTCGCGCTAGGTGACGTAGTGAAGGAGATTTTGTTTTTGAGGCAGAT
TTGGCGTTTCATGTTGCCGCAGGTCGGCATGCCGTGCATCCCCGTCTTCG
AGGACANTCAAACTCGAACTCGAAGCACATAGATAGATGTAAGGCACCAT
TTTCTCAGGGAACTGGTAGAGAGGAAGGAAATTTCGGTCATCCACGTGCC
GTCGCCATACCACCAGCGTACAGACTTCCTTACGAAGAGTTTGTCGAAGG
ATGCTTTCGAGTCTCACCGTGATTTTGTGATGAATTTGGCATGAACATTT
TATTGTTTTTCTGATGGGTTGTGTTTTGCTTCCCGTTTGTTTCCCGTTTT
GTTTCATTTCCCGCGCCAAGTATTTGTTACGCGCGATGCAGCATTCATTC
ATGTTTCTTTGAAATGTTTCTCTCTCTTAGATTATTCTGGTCAAGTCTTC
ATGGCATATATTCTAGGAAAGACGTATTTTGGTTGAGATGTCGGGTGTTA
GCGAAGTTTGCAGTGAGAAACTGTTGCGAGCAGGGGGGATGCCAGATATA
CTCGCAGCAGTATCTGGTCGTGAGGATCCCAGGGGGATACGTGTTGGGAA
TTTCGTGTGTTTAAGGGTACCACCGGTGCAGTCACGGGGACCCTTTAGGC
GTGGTTGGAGCGATGATGAGGCTTGCGTGCGTGCTGCGCGCTTCTTCTTC
CCTCTCTCTCTCCACCGCCACC
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Coding sequence (CDS) from alignment at Scaffold_392:95987..101858+

>EsuBft1371_4a-0001 ID=EsuBft1371_4a-0001|Name=EsuBft1371_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=117bp|location=Sequence derived from alignment at Scaffold_392:95987..101858+ (Ectocarpus subulatus male Bft15b)
ATGAAGAGGGGTGTGAATGAGGAGGACCTCTTCGTGGACGTGGGCCTGAT
ATACTCGCAGCAGTATCTGGTCGTGAGGATCCCAGGGGGATACGTGTTGG
GAATTTCGTGTGTTTAA
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