Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 159749.K0QZP2 |
| ProteomeId | EsuBft1371_3 |
| Protein domains | IPR001584 |
| Protein domains | IPR012337 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 4 |
| Max annot lvl | 2759|Eukaryota |
| Length | 297 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.79e-08 |
| EggNOG OGs | COG0507@1|root,COG2801@1|root,KOG0017@2759|Eukaryota,KOG0987@2759|Eukaryota,2XG4E@2836|Bacillariophyta |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | PIF1-like helicase |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003676 |
| GO | 0015074 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1371_3a-0001 ID=EsuBft1371_3a-0001|Name=EsuBft1371_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2972bp|location=Sequence derived from alignment at Scaffold_392:89649..92949+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCCGCCGGGAGCGACAGCGGCAGGGGCTGCGACGGAAGCAGCGGCGGT
GGCAACGGGTCCCGACAGCAGCGTCATCAGTGCAGGCGACGGCAGGGTGG
CTTCGGCCAGAGCTCCGTCGGCGGCAGCGGGAGTGGCGGCCACGGCCAGA
GCTCCGGAGGAGGCGGCGGCAGGACGCGCCGCAACCATGACGCACCGAGA
TGTGAGTGGTGGCTTCGGCCAGAGCTCCGTTTGCGGCGACGGGAGTGGTG
GCCTCGGTCAGAGCTCCGGGGGGGGCGGCACCAGCGATGGCGGTGACCGT
AGTAACGGGCGTAGCAGCGGCGGCGGTGGCGGCGGCAGCTGCGGCGGCTG
CGGCGGCAACGAGGGTGGTGTCAGCGGTCGCGATGTTAGCGGCTTACAAC
CCGTTGCCATGGCCGCTGCTCTCATGCGGCCGGGTATGCCGGCGGCCATG
GACATCAACGATCTCCACGTCTCCTTGGGCCACGCACACGAGCGCGTCAT
CCGCGAAGAAGCTCGCCAGATGAAGATCAAAGTCACTGGTTCACTGTCGT
TTTGCGACGGGTGTGCCGTCGGCAAGGGCATCCGCAAGGCGATTTCCACG
ACGACTTCCTCCACGGTCTCGCGACCTCTTCAACGCCTCTTAGCCGATCT
CACGGGCCCGCTCCCCCCCTCCGCTGGTGGTGACACCTATTGCCTCGCCG
TAGTCGATGATAACACCAACTACGGTATCGTCAAATTCATTCCAGACAAG
CAGGCCACGACCGTGACGAAAGCCCTCCGCGAGATCTTCGTTTCCCTTCG
CCCTCTGCCGGACACCCACGGCGACTTCCAGTTCTTCGGACGTACAATGG
CACTTAGCTGGTCAACGCGTCGGTGGAGCGTCGGATCGGGCTGGTCCGGG
AGGGCGGCCGGGCAGTTTTCACGGAGGCTTTTCTGTTCTTCCCCGACCTC
CAGTTCCCTCGCGTGGCCTGCGATTACAACCGCATCTGGCCGGAGGCATG
GAGCGGCATGTCCTCCTGCATCAACACGCTGCCGCGGCTTGATATATCCC
TCGATCAGCTCTGCCCATACGAGATATTCCGAGGCAAACGTCCTCTGCGT
CAACCTCTGCCCTTCCTCATGCCGGGCATCCACCACGCCCGCATCCCCGT
CAAAAATCGCACCCAAGGGCGAGCGGTGCTTTTACCTTAACCCCGGCGAC
TATCACTCCCGCGACTGCTGCAAGGTTATCTTCCCCGCCGGAGCCGTGGG
GTACACTAGGGACGTTGTTTGGGGTTACCGCCGTCAACCGTTTGTGGGTA
TCGTACCGACGTACAACGGCCGCGCCATATCTACGCCGGCGGGAGCGACG
TCGGTGGGAGCGGCGGCGGTGCGAACGGCTTCGGCCGGCGCGCCGTCCCC
GGCGGCAGCATTGACGGGGGCATCGGCAGGAGCGGCGGCGGCGTGGACGG
CTTCAGGAGCGGCGACGGCAGCGGCGGCGGCAGCGGCGGCTTCGGCCAGA
TCCCTGTCGCCGGTAACAGCATCGGCGGGAATGGCAGCAGCCGGAGTGGC
GACGCCGGCACCGACGGCGGCGGCGACACCGGCGTTCGCGGGGGCGGTCG
AACACACGAGCCATCAGCGCGACCGATACCAAGTAACACCGGCGCTGAGC
AGGCCGCGTGCGCGACAGGCGGTGGCCCGTGGATCAACTCGAGGATTACC
GGGTGCACTTGCGCTTCCTTCAATGGAGGAGGATATGGTCGCTTCGCTCG
CCGCTCACCCTTTGCAGGATGAGCCCCCGTTACCCAACGGGCCGGCGCGC
GACCTTGAGACTCCTACTACCTACGCCCGGGCTCACGCGGGACCGCACAG
CGCGACTTGGGGAGCAGCCGAGAAGTGGGAGATAGATGGGCTGGTTGGGG
CGGGCGCGTTCGAGCCGGCGGGTGGGCTCTAGCCACGAGGAACGACGTCA
TCTCCGCCAAATGGGTCTACACATGGAAAGTCGATGAATTCGGTGATGTG
TTGCGTGCAAAGGCTAGGCTTGTAGCAAGGAGTTTCGGTCAGCGTGAACG
TACTGACTATTTTGAGACTTTTTCTCCGTGCCCTACCCATCCGAGTATTC
GCCTCTTGCCTGCTATCGCGTGTGAAATGGGTTGGGACATGTGCCACTTT
GATGCTGATCAAGCGTTTGTGCAATCGAAGCTACATGAGATCGTGTACGT
GCGTCTGCCGCAGGGTTGTAGGCCCCTTTCGGGTATGATTGTGAGGCTTG
CCCGTAGTCTTTGTGGCTTGAAGCAGGCGTCACGCACGTGGCACCACCAC
CTTGTTCGGGGCATGAAATCTCTTGGGTTTGACCAGTGTGCTGCTGATGC
GTGTTTCATGCGTTTGATCGAGGATGGTGTGCCTTCCATGGTAGTTGTGG
TGCATGTAGATGACATATTTTCCATCGGGCGGAAGAGTCGGTGTGACAGG
TTTGGTCGAGACTTGAACGCCTACGTTCCCATCACCAACCTCGGGGCGTT
GCGTGTGTATGCGGGAGTTCGTTTTTCGCGCGATTGAGATACTAGTACGC
TTACATTGTCGCAAGAAACTTTTGCTATCAACTTGGTTGAGAAGTTTGAT
GTCACGCGCAACAAGAAGACCCCCATGCCTGTTGGAGTGAAGCTTGACGA
TTTTGCTGCGGACGAACCTGATGTTCTTGAGCCTTTTCGTATTCCCATGC
ACCCAAAAGCTTACACTGGCGGGCTGCGTTGCATATTGCAATGTACATTA
GATTCACGAGTGCTCTTGGTATTACATTTCAGCGGCGTTCCAGGGGGGTA
TCGATTTGCTCTTGTATGTTGACTCCGACTACTACGCCAACAACGCCACT
GACCGGCGGTCGGTCTCGGGAGCAGTTGTCATGTGCGGCGGTGCGTGTGT
TTCGTTTTTGTCTCGGACGCAGAAAAGTGTGACACTGTCGTCGACGGAAG
CGGAGTATGTCGCGATGGCCGA back to topprotein sequence of EsuBft1371_3a-0001 >EsuBft1371_3 ID=EsuBft1371_3|Name=EsuBft1371_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=643bp
MPPGATAAGAATEAAAVATGPDSSVISAGDGRVASARAPSAAAGVAATAR
APEEAAAGRAATMTHRDVSGGFGQSSVCGDGSGGLGQSSGGGGTSDGGDR
SNGRSSGGGGGGSCGGCGGNEGGVSGRDVSGLQPVAMAAALMRPGMPAAM
DINDLHVSLGHAHERVIREEARQMKIKVTGSLSFCDGCAVGKGIRKAIST
TTSSTVSRPLQRLLADLTGPLPPSAGGDTYCLAVVDDNTNYGIVKFIPDK
QATTVTKALREIFVSLRPLPDTHGDFQFFGRTMALSWSTRRWSVGSGWSG
RAAGQFSRRLFCSSPTSSSLAWPAITTASGRRHGAACPPASTRCRGLIYP
SISSAHTRYSEANVLCVNLCPSSCRASTTPASPSKIAPKGERCFYLNPGD
YHSRDCCKVIFPAGAVGYTRDVVWGYRRQPFVGIVPTYNGRAISTPAGAT
SVGAAAVRTASAGAPSPAAALTGASAGAAAAWTASGAATAAAAAAAASAR
SLSPVTASAGMAAAGVATPAPTAAATPAFAGAVEHTSHQRDRYQVTPALS
RPRARQAVARGSTRGLPGALALPSMEEDMVASLAAHPLQDEPPLPNGPAR
DLETPTTYARAHAGPHSATWGAAEKWEIDGLVGAGAFEPAGGL back to topmRNA from alignment at Scaffold_392:89649..92949+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1371_3a-0001 ID=EsuBft1371_3a-0001|Name=EsuBft1371_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3301bp|location=Sequence derived from alignment at Scaffold_392:89649..92949+ (Ectocarpus subulatus male Bft15b)
ATGCCGCCGGGAGCGACAGCGGCAGGGGCTGCGACGGAAGCAGCGGCGGT
GGCAACGGGTCCCGACAGCAGCGTCATCAGTGCAGGCGACGGCAGGGTGG
CTTCGGCCAGAGCTCCGTCGGCGGCAGCGGGAGTGGCGGCCACGGCCAGA
GCTCCGGAGGAGGCGGCGGCAGGACGCGCCGCAACGTGAGTGGTGGCTTC
GGCCAGAGCTCCGTCAGGCGGCAGTGGGAGTGGCGGCTACGGTCAGAGCT
CCGGGGACGGCGGTATCAGCATGACGCACCGAGATGTGAGTGGTGGCTTC
GGCCAGAGCTCCGTTTGCGGCGACGGGAGTGGTGGCCTCGGTCAGAGCTC
CGGGGGGGGCGGCACCAGCGATGGCGGTGACCGTAGTAACGGGCGTAGCA
GCGGCGGCGGTGGCGGCGGCAGCTGCGGCGGCTGCGGCGGCAACGAGGGT
GGTGTCAGCGGTCGCGATGTTAGCGGCTTACAACCCGTTGCCATGGCCGC
TGCTCTCATGCGGCCGGGTATGCCGGCGGCCATGGACATCAACGATCTCC
ACGTCTCCTTGGGCCACGCACACGAGCGCGTCATCCGCGAAGAAGCTCGC
CAGATGAAGATCAAAGTCACTGGTTCACTGTCGTTTTGCGACGGGTGTGC
CGTCGGCAAGGGCATCCGCAAGGCGATTTCCACGACGACTTCCTCCACGG
TCTCGCGACCTCTTCAACGCCTCTTAGCCGATCTCACGGGCCCGCTCCCC
CCCTCCGCTGGTGGTGACACCTATTGCCTCGCCGTAGTCGATGATAACAC
CAACTACGGTATCGTCAAATTCATTCCAGACAAGCAGGCCACGACCGTGA
CGAAAGCCCTCCGCGAGATCTTCGTTTCCCTTCGCCCTCTGCCGGACACC
CACGGCGACTTCCAGTTCTTCGGACGTACAATGGCACTTAGCTGGTCAAC
GCGTCGGTGAGCGATCTGCTTCTGGAGTTCGGCATCACCCGGGAGCTGAC
GTCCCCTGACGGAGGGCAGAAGCGTAACGGGCAGGTGGAGCGTCGGATCG
GGCTGGTCCGGGAGGGCGGCCGGGCAGTTTTCACGGAGGCTTTTCTGTTC
TTCCCCGACCTCCAGTTCCCTCGCGTGGCCTGCGATTACAACCGCATCTG
GCCGGAGGCATGGAGCGGCATGTCCTCCTGCATCAACACGCTGCCGCGGC
TTGATATATCCCTCGATCAGCTCTGCCCATACGAGATATTCCGAGGCAAA
CGTCCTCTGCGTCAACCTCTGCCCTTCCTCATGCCGGGCATCCACCACGC
CCGCATCCCCGTCAAAAATCGCACCCAAGGGCGAGCGGTGCTTTTACCTT
AACCCCGGCGACTATCACTCCCGCGACTGCTGCAAGGTTATCTTCCCCGC
CGGAGCCGTGGGGTACACTAGGGACGTTGTTTGGGGTTACCGCCGTCAAC
CGTTTGTGGGTATCGTACCGACGTACAACGGCCGCGCCATATCTACGCCG
GCGGGAGCGACGTCGGTGGGAGCGGCGGCGGTGCGAACGGCTTCGGCCGG
CGCGCCGTCCCCGGCGGCAGCATTGACGGGGGCATCGGCAGGAGCGGCGG
CGGCGTGGACGGCTTCAGGAGCGGCGACGGCAGCGGCGGCGGCAGCGGCG
GCTTCGGCCAGATCCCTGTCGCCGGTAACAGCATCGGCGGGAATGGCAGC
AGCCGGAGTGGCGACGCCGGCACCGACGGCGGCGGCGACACCGGCGTTCG
CGGGGGCGGTCGAACACACGAGCGTAGGGAGCGTCTTCCCCCCCTTGTCC
GTTTTACCTGCCGCCCCCGCCCCCGCCCCCCCGTCGTCCGTGCCCCCCCT
CGCATCTTCAGCATCAGCGCGACCGATACCAAGTAACACCGGCGCTGAGC
AGGCCGCGTGCGCGACAGGCGGTGGCCCGTGGATCAACTCGAGGATTACC
GGGTGCACTTGCGCTTCCTTCAATGGAGGAGGATATGGTCGCTTCGCTCG
CCGCTCACCCTTTGCAGGATGAGCCCCCGTTACCCAACGGGCCGGCGCGC
GACCTTGAGACTCCTACTACCTACGCCCGGGCTCACGCGGGACCGCACAG
CGCGACTTGGGGAGCAGCCGAGAAGTGGGAGATAGATGGGCTGGTTGGGG
CGGGCGCGTTCGAGCCGGCGGGTGGGCTCTAGCCACGAGGAACGACGTCA
TCTCCGCCAAATGGGTCTACACATGGAAAGTCGATGAATTCGGTGATGTG
TTGCGTGCAAAGGCTAGGCTTGTAGCAAGGAGTTTCGGTCAGCGTGAACG
TACTGACTATTTTGAGACTTTTTCTCCGTGCCCTACCCATCCGAGTATTC
GCCTCTTGCCTGCTATCGCGTGTGAAATGGGTTGGGACATGTGCCACTTT
GATGCTGATCAAGCGTTTGTGCAATCGAAGCTACATGAGATCGTGTACGT
GCGTCTGCCGCAGGGTTGTAGGCCCCTTTCGGGTATGATTGTGAGGCTTG
CCCGTAGTCTTTGTGGCTTGAAGCAGGCGTCACGCACGTGGCACCACCAC
CTTGTTCGGGGCATGAAATCTCTTGGGTTTGACCAGTGTGCTGCTGATGC
GTGTTTCATGCGTTTGATCGAGGATGGTGTGCCTTCCATGGTAGTTGTGG
TGCATGTAGATGACATATTTTCCATCGGGCGGAAGAGTCGGTGTGACAGG
TTTGGTCGAGACTTGAACGCCTACGTTCCCATCACCAACCTCGGGGCGTT
GCGTGTGTATGCGGGAGTTCGTTTTTCGCGCGATTGAGATACTAGTACGC
TTACATTGTCGCAAGAAACTTTTGCTATCAACTTGGTTGAGAAGTTTGAT
GTCACGCGCAACAAGAAGACCCCCATGCCTGTTGGAGTGAAGCTTGACGA
TTTTGCTGCGGACGAACCTGATGTTCTTGAGCCTTTTCGTTCTTTGGTCG
GTCATCTCACGTGGCTTGCCGACCAGACTCGGCCGGATATCCTTAATGCC
GTGCGATCCGTTGCGAGGTATTCCCATGCACCCAAAAGCTTACACTGGCG
GGCTGCGTTGCATATTGCAATGTACATTAGATTCACGAGTGCTCTTGGTA
TTACATTTCAGCGGCGTTCCAGGGGGGTATCGATTTGCTCTTGTATGTTG
ACTCCGACTACTACGCCAACAACGCCACTGACCGGCGGTCGGTCTCGGGA
GCAGTTGTCATGTGCGGCGGTGCGTGTGTTTCGTTTTTGTCTCGGACGCA
GAAAAGTGTGACACTGTCGTCGACGGAAGCGGAGTATGTCGCGATGGCCG
A back to topCoding sequence (CDS) from alignment at Scaffold_392:89649..92949+ >EsuBft1371_3a-0001 ID=EsuBft1371_3a-0001|Name=EsuBft1371_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1932bp|location=Sequence derived from alignment at Scaffold_392:89649..92949+ (Ectocarpus subulatus male Bft15b)
ATGCCGCCGGGAGCGACAGCGGCAGGGGCTGCGACGGAAGCAGCGGCGGT
GGCAACGGGTCCCGACAGCAGCGTCATCAGTGCAGGCGACGGCAGGGTGG
CTTCGGCCAGAGCTCCGTCGGCGGCAGCGGGAGTGGCGGCCACGGCCAGA
GCTCCGGAGGAGGCGGCGGCAGGACGCGCCGCAACCATGACGCACCGAGA
TGTGAGTGGTGGCTTCGGCCAGAGCTCCGTTTGCGGCGACGGGAGTGGTG
GCCTCGGTCAGAGCTCCGGGGGGGGCGGCACCAGCGATGGCGGTGACCGT
AGTAACGGGCGTAGCAGCGGCGGCGGTGGCGGCGGCAGCTGCGGCGGCTG
CGGCGGCAACGAGGGTGGTGTCAGCGGTCGCGATGTTAGCGGCTTACAAC
CCGTTGCCATGGCCGCTGCTCTCATGCGGCCGGGTATGCCGGCGGCCATG
GACATCAACGATCTCCACGTCTCCTTGGGCCACGCACACGAGCGCGTCAT
CCGCGAAGAAGCTCGCCAGATGAAGATCAAAGTCACTGGTTCACTGTCGT
TTTGCGACGGGTGTGCCGTCGGCAAGGGCATCCGCAAGGCGATTTCCACG
ACGACTTCCTCCACGGTCTCGCGACCTCTTCAACGCCTCTTAGCCGATCT
CACGGGCCCGCTCCCCCCCTCCGCTGGTGGTGACACCTATTGCCTCGCCG
TAGTCGATGATAACACCAACTACGGTATCGTCAAATTCATTCCAGACAAG
CAGGCCACGACCGTGACGAAAGCCCTCCGCGAGATCTTCGTTTCCCTTCG
CCCTCTGCCGGACACCCACGGCGACTTCCAGTTCTTCGGACGTACAATGG
CACTTAGCTGGTCAACGCGTCGGTGGAGCGTCGGATCGGGCTGGTCCGGG
AGGGCGGCCGGGCAGTTTTCACGGAGGCTTTTCTGTTCTTCCCCGACCTC
CAGTTCCCTCGCGTGGCCTGCGATTACAACCGCATCTGGCCGGAGGCATG
GAGCGGCATGTCCTCCTGCATCAACACGCTGCCGCGGCTTGATATATCCC
TCGATCAGCTCTGCCCATACGAGATATTCCGAGGCAAACGTCCTCTGCGT
CAACCTCTGCCCTTCCTCATGCCGGGCATCCACCACGCCCGCATCCCCGT
CAAAAATCGCACCCAAGGGCGAGCGGTGCTTTTACCTTAACCCCGGCGAC
TATCACTCCCGCGACTGCTGCAAGGTTATCTTCCCCGCCGGAGCCGTGGG
GTACACTAGGGACGTTGTTTGGGGTTACCGCCGTCAACCGTTTGTGGGTA
TCGTACCGACGTACAACGGCCGCGCCATATCTACGCCGGCGGGAGCGACG
TCGGTGGGAGCGGCGGCGGTGCGAACGGCTTCGGCCGGCGCGCCGTCCCC
GGCGGCAGCATTGACGGGGGCATCGGCAGGAGCGGCGGCGGCGTGGACGG
CTTCAGGAGCGGCGACGGCAGCGGCGGCGGCAGCGGCGGCTTCGGCCAGA
TCCCTGTCGCCGGTAACAGCATCGGCGGGAATGGCAGCAGCCGGAGTGGC
GACGCCGGCACCGACGGCGGCGGCGACACCGGCGTTCGCGGGGGCGGTCG
AACACACGAGCCATCAGCGCGACCGATACCAAGTAACACCGGCGCTGAGC
AGGCCGCGTGCGCGACAGGCGGTGGCCCGTGGATCAACTCGAGGATTACC
GGGTGCACTTGCGCTTCCTTCAATGGAGGAGGATATGGTCGCTTCGCTCG
CCGCTCACCCTTTGCAGGATGAGCCCCCGTTACCCAACGGGCCGGCGCGC
GACCTTGAGACTCCTACTACCTACGCCCGGGCTCACGCGGGACCGCACAG
CGCGACTTGGGGAGCAGCCGAGAAGTGGGAGATAGATGGGCTGGTTGGGG
CGGGCGCGTTCGAGCCGGCGGGTGGGCTCTAG back to top
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