EsuBft1363_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1363_9a-0001
Unique NameEsuBft1363_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_372contigScaffold_372:395431..395928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog7668.SPU_007890-tr
ProteomeIdEsuBft1363_9
Protein domainsIPR009057
Protein domainsSignalP-noTM
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsPTHR19303
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsIPR007889
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl33208|Metazoa
Length49
Evalue2.48e-15
EggNOG OGs2CXPE@1|root,2RYUX@2759|Eukaryota,39MS3@33154|Opisthokonta,3CPBT@33208|Metazoa,3E5GP@33213|Bilateria
Date last modified2016-06-14
Date creation2016-06-14
DescriptionDDE superfamily endonuclease
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0003677
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_9aEsuBft1363_9aEctocarpus subulatus male Bft15bgeneScaffold_372 395431..395928 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_9a-0001-exonEsuBft1363_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_372 395431..395928 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_9a-0001-cdsEsuBft1363_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_372 395431..395928 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_9a-0001EsuBft1363_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_372 395431..395928 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1363_9a-0001 ID=EsuBft1363_9a-0001|Name=EsuBft1363_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=498bp|location=Sequence derived from alignment at Scaffold_372:395431..395928+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGGGCATCTTTGCCCTTTTCGGGGTCCTGCTGCTAAGCATGGGACG
TAAGAGAGTAGACCCAGAGCAGGCCCAGAAGGCTGTAGATGCGGTACGCA
GCGGTGAGATGTCGCTCCGCGTTGCTGCGAGGACCTACGGGTTACCGCTA
GCCTCGCTGCACGACCGTGTGAAGAACAAGGTGGCCATAGATGCGAGGGT
TGGTCCCGGGACTGTCCTGAGCAAGGAGGAGGAAGATTTCGTAGAAGACG
TCTTGATCTACGCCTCCCGACACTTCTTGCTGTTGGGTCGGAGGGAGCTG
AGAGACGCTGTGCGCAACATCTGCACCGACGGGCGCAAGGTGCCCTGGGA
CCCAGACAAGGGCCCTGGGGACAGCTGGCTTGAGGGGTTTATGGCGAGAC
ACCCGGGTTTGTCGGAGCGAGCCACCCACATCTACGAAGCAAACCGGATT
AACGAAGACGGCGAGCCTCGCCTTCAAGCTTTCTACAAAGCATGGNNN
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protein sequence of EsuBft1363_9a-0001

>EsuBft1363_9 ID=EsuBft1363_9|Name=EsuBft1363_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=166bp
MWGIFALFGVLLLSMGRKRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPL
ASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLIYASRHFLLLGRREL
RDAVRNICTDGRKVPWDPDKGPGDSWLEGFMARHPGLSERATHIYEANRI
NEDGEPRLQAFYKAWX
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mRNA from alignment at Scaffold_372:395431..395928+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1363_9a-0001 ID=EsuBft1363_9a-0001|Name=EsuBft1363_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=498bp|location=Sequence derived from alignment at Scaffold_372:395431..395928+ (Ectocarpus subulatus male Bft15b)
ATGTGGGGCATCTTTGCCCTTTTCGGGGTCCTGCTGCTAAGCATGGGACG
TAAGAGAGTAGACCCAGAGCAGGCCCAGAAGGCTGTAGATGCGGTACGCA
GCGGTGAGATGTCGCTCCGCGTTGCTGCGAGGACCTACGGGTTACCGCTA
GCCTCGCTGCACGACCGTGTGAAGAACAAGGTGGCCATAGATGCGAGGGT
TGGTCCCGGGACTGTCCTGAGCAAGGAGGAGGAAGATTTCGTAGAAGACG
TCTTGATCTACGCCTCCCGACACTTCTTGCTGTTGGGTCGGAGGGAGCTG
AGAGACGCTGTGCGCAACATCTGCACCGACGGGCGCAAGGTGCCCTGGGA
CCCAGACAAGGGCCCTGGGGACAGCTGGCTTGAGGGGTTTATGGCGAGAC
ACCCGGGTTTGTCGGAGCGAGCCACCCACATCTACGAAGCAAACCGGATT
AACGAAGACGGCGAGCCTCGCCTTCAAGCTTTCTACAAAGCATGGNNN
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Coding sequence (CDS) from alignment at Scaffold_372:395431..395928+

>EsuBft1363_9a-0001 ID=EsuBft1363_9a-0001|Name=EsuBft1363_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=498bp|location=Sequence derived from alignment at Scaffold_372:395431..395928+ (Ectocarpus subulatus male Bft15b)
ATGTGGGGCATCTTTGCCCTTTTCGGGGTCCTGCTGCTAAGCATGGGACG
TAAGAGAGTAGACCCAGAGCAGGCCCAGAAGGCTGTAGATGCGGTACGCA
GCGGTGAGATGTCGCTCCGCGTTGCTGCGAGGACCTACGGGTTACCGCTA
GCCTCGCTGCACGACCGTGTGAAGAACAAGGTGGCCATAGATGCGAGGGT
TGGTCCCGGGACTGTCCTGAGCAAGGAGGAGGAAGATTTCGTAGAAGACG
TCTTGATCTACGCCTCCCGACACTTCTTGCTGTTGGGTCGGAGGGAGCTG
AGAGACGCTGTGCGCAACATCTGCACCGACGGGCGCAAGGTGCCCTGGGA
CCCAGACAAGGGCCCTGGGGACAGCTGGCTTGAGGGGTTTATGGCGAGAC
ACCCGGGTTTGTCGGAGCGAGCCACCCACATCTACGAAGCAAACCGGATT
AACGAAGACGGCGAGCCTCGCCTTCAAGCTTTCTACAAAGCATGGNNN
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