EsuBft1363_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1363_8a-0001
Unique NameEsuBft1363_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_372contigScaffold_372:416303..417186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6334.EFV58439
ProteomeIdEsuBft1363_8
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon2
Max annot lvl33208|Metazoa
Length774
Evalue7.32e-25
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria,40FC4@6231|Nematoda
Date last modified2016-06-14
Date creation2016-06-14
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003824
GO0005488
GO0090304
GO0016740
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_8aEsuBft1363_8aEctocarpus subulatus male Bft15bgeneScaffold_372 416303..417186 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_8a-0001-exonagat-exon-2058Ectocarpus subulatus male Bft15bexonScaffold_372 416303..416617 -
EsuBft1363_8a-0001-exonEsuBft1363_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_372 416728..417186 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_8a-0001-exonagat-three_prime_utr-3295Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_372 416303..416503 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_8a-0001-cdsEsuBft1363_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_372 416504..416617 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_8a-0001EsuBft1363_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_372 416504..417186 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1363_8a-0001 ID=EsuBft1363_8a-0001|Name=EsuBft1363_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=774bp|location=Sequence derived from alignment at Scaffold_372:416303..417186- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTGCGGGAGGGGCGATTGCATGGTTGTCCAAGACTCAAAAGTGTGT
GAATTTGTCTACCACGCAGGCAGAATACGTGGCGGTGGCGGACATGGGGA
AGGAGATTTTGTTTTTGAGGCAAGTTTGGTGTTTCATGTTGCCTAAGGAG
TTGCGGCCGTGCATTCCACTGTATGAAGACAACGAAGGGGCTATCCAGAT
CGCAAAACACCCGATCTCGAATTCCAACTCGAAGCACATCGACGCGCGGC
ATCACTTCCTCAGGCAGCTCGTAGATGAGAAGGAGGTAGAGATCATCCAC
GTAGCGTCGAAGTATCAGCATGCCGACTTCCTCACGAAGGCGCTACCTGA
GAGAGAGTTTGTTTCCCACCGGGACTACGTGATNATCAGCATGCCGACTT
CCTCACGAAGGCGCTACCTGAGAGTTTGTTTCCCACCCGGACTACGTGAT
GAACTTGAAATTATCAATGGAATCATAGCGTCAGAGAAAATTACCTGTGT
GTCTACGATTTCCCAGACAGCATACAGGGACATCTCCCCTGTGGGTAACA
GGCTCAACAAATCAGTTTGGTAACTGTCTTGTGTGTCTCATATATGTTAT
GTTGGGAAGGTGCAGACGAAAGGTGTTGGGTACTGTTGGGTAGTCGGGCG
TTTTGTGTGTCGCACCCTGTTAGTTGTAGGACATGCAATCTCCATCAGTT
TATAAACATATTCTCAGTTTGGCATGCATATGTGCGGAGTATGTGCGGCT
GATGTGCCATCTCTATCGCAGAAA
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protein sequence of EsuBft1363_8a-0001

>EsuBft1363_8 ID=EsuBft1363_8|Name=EsuBft1363_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=190bp
MCAGGAIAWLSKTQKCVNLSTTQAEYVAVADMGKEILFLRQVWCFMLPKE
LRPCIPLYEDNEGAIQIAKHPISNSNSKHIDARHHFLRQLVDEKEVEIIH
VASKYQHADFLTKALPEREFVSHRDYVXISMPTSSRRRYLRVCFPPGLRD
ELEIINGIIASEKITCVSTISQTAYRDISPVGNRLNKSVW
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mRNA from alignment at Scaffold_372:416303..417186-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1363_8a-0001 ID=EsuBft1363_8a-0001|Name=EsuBft1363_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=884bp|location=Sequence derived from alignment at Scaffold_372:416303..417186- (Ectocarpus subulatus male Bft15b)
ATGTGTGCGGGAGGGGCGATTGCATGGTTGTCCAAGACTCAAAAGTGTGT
GAATTTGTCTACCACGCAGGCAGAATACGTGGCGGTGGCGGACATGGGGA
AGGAGATTTTGTTTTTGAGGCAAGTTTGGTGTTTCATGTTGCCTAAGGAG
TTGCGGCCGTGCATTCCACTGTATGAAGACAACGAAGGGGCTATCCAGAT
CGCAAAACACCCGATCTCGAATTCCAACTCGAAGCACATCGACGCGCGGC
ATCACTTCCTCAGGCAGCTCGTAGATGAGAAGGAGGTAGAGATCATCCAC
GTAGCGTCGAAGTATCAGCATGCCGACTTCCTCACGAAGGCGCTACCTGA
GAGAGAGTTTGTTTCCCACCGGGACTACGTGATNATCAGCATGCCGACTT
CCTCACGAAGGCGCTACCTGAGAGTTTGTTTCCCACCCGGACTACGTGAT
GAACTTGAAGTGAGTAGTCCGGGAGATTTTTTTCGCTTTTGGGTCTTGTG
TCTTTTGTTTTATTTTTCTTAATGTGACGCAACGAGTCCATCTCTATCAT
AGAAAATAGTCAGAGACAGATTATCAATGGAATCATAGCGTCAGAGAAAA
TTACCTGTGTGTCTACGATTTCCCAGACAGCATACAGGGACATCTCCCCT
GTGGGTAACAGGCTCAACAAATCAGTTTGGTAACTGTCTTGTGTGTCTCA
TATATGTTATGTTGGGAAGGTGCAGACGAAAGGTGTTGGGTACTGTTGGG
TAGTCGGGCGTTTTGTGTGTCGCACCCTGTTAGTTGTAGGACATGCAATC
TCCATCAGTTTATAAACATATTCTCAGTTTGGCATGCATATGTGCGGAGT
ATGTGCGGCTGATGTGCCATCTCTATCGCAGAAA
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Coding sequence (CDS) from alignment at Scaffold_372:416303..417186-

>EsuBft1363_8a-0001 ID=EsuBft1363_8a-0001|Name=EsuBft1363_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=573bp|location=Sequence derived from alignment at Scaffold_372:416303..417186- (Ectocarpus subulatus male Bft15b)
ATGTGTGCGGGAGGGGCGATTGCATGGTTGTCCAAGACTCAAAAGTGTGT
GAATTTGTCTACCACGCAGGCAGAATACGTGGCGGTGGCGGACATGGGGA
AGGAGATTTTGTTTTTGAGGCAAGTTTGGTGTTTCATGTTGCCTAAGGAG
TTGCGGCCGTGCATTCCACTGTATGAAGACAACGAAGGGGCTATCCAGAT
CGCAAAACACCCGATCTCGAATTCCAACTCGAAGCACATCGACGCGCGGC
ATCACTTCCTCAGGCAGCTCGTAGATGAGAAGGAGGTAGAGATCATCCAC
GTAGCGTCGAAGTATCAGCATGCCGACTTCCTCACGAAGGCGCTACCTGA
GAGAGAGTTTGTTTCCCACCGGGACTACGTGATNATCAGCATGCCGACTT
CCTCACGAAGGCGCTACCTGAGAGTTTGTTTCCCACCCGGACTACGTGAT
GAACTTGAAATTATCAATGGAATCATAGCGTCAGAGAAAATTACCTGTGT
GTCTACGATTTCCCAGACAGCATACAGGGACATCTCCCCTGTGGGTAACA
GGCTCAACAAATCAGTTTGGTAA
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