EsuBft1363_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1363_7a-0001
Unique NameEsuBft1363_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_372contigScaffold_372:419247..421089 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1363_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length148
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_7aEsuBft1363_7aEctocarpus subulatus male Bft15bgeneScaffold_372 419247..421089 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_7a-0001-exonagat-exon-2057Ectocarpus subulatus male Bft15bexonScaffold_372 419247..419795 +
EsuBft1363_7a-0001-exonEsuBft1363_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_372 420156..421089 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_7a-0001-exonagat-five_prime_utr-2171Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_372 419247..419549 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_7a-0001-cdsEsuBft1363_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_372 419550..419795 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_7a-0001-exonagat-three_prime_utr-3294Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_372 420768..421089 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_7a-0001EsuBft1363_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_372 419550..420767 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1363_7a-0001 ID=EsuBft1363_7a-0001|Name=EsuBft1363_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1483bp|location=Sequence derived from alignment at Scaffold_372:419247..421089+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CATCCTGTTTCACCATGAACATGAGGACGACTCATGCCTCGTTCTCCACG
GCAATCGACTCCGCTTGATCGAACTACATGCAGAGGACACCACTCTCGAG
GTCTTCAGCCCTAAACTCCAACATCTACAGCCGTGCCGACTCGGGCCTGG
CCGTGGCTCGTTGCAGTCTCATGCTTGTAGACCGCATAATCCACGTCCGC
GGGGAAAAGAGGATAGTAAAGGCAGCACCGGAAGAAGCACAACCGCGGGA
TACTGTTAACCTCCTTGTTGTTAAAGAAGGCTACCACCAAGGCAGCTGGC
AGTATGTCGTCCTCTGTAGTTGCTGATGAAGATCAGCTCCACGAAAAGGG
TAGAGAGCATGCTGAAGCCATCCAGGAACGAGCATCAAAGCGTGGCAACC
AACAGGCTGCCGCTGCTGCTGCTGCTGCTGCTGCTGCGGGGAAGGGGAGG
CGCAAGGGGGCGGACGCAGCTCTCTCCAACCCTCTAGCATTGGCTCACGA
TGGCGGGACGAGAAGCGGGGCTACCCCAGAGGCTTCGCGCGAGGAGCAGG
CTTCGGAGGAGCGTCGCTCTAGCGCGCTGGAGTTGACCCAGAAAGACCAC
ATGTTGATGGAGCGAGTACGGGTCATGCTGGGGGCGAGCGCTGCAGACCA
GGCAGCAGCTAAGGAGGCGGTGGTCAACGCGGCGAACACTCGCGCGCTCC
GTGCCTCGCTCCAAGCGCTGAAGTGGCACAGCAACAGCTCGATAGGGTGG
ACCGCGTACACGACAGCGCTCGCCACAGCAGCGGGAGCGGGGGAGCACAC
GTGTCCTGACCCCAACCTGTGCCACCCTGGCAACCGGTGCAAGCCCGCTG
AGCCTGGTGGAGTGAGCTTTGCCGAGCGAGCCAAGAGTCTCGGCATTCGG
TACGAGACTTTCGGCGACGCACGTTTCCGGATGCACAACACGAACCACGA
CATCGCCCCCAGGGACGCTGTGAGTGACGGGTGCTACGTGTATAACGAGC
GCAAGACACGGAGTGACGTGACGAATCCCGAGGTAATGGCTCTCGCCAAG
GCTTTTTGGCACTCCGACGACGTTTCCCGTGCAACAGGAAATTCAGGCAA
GTTGCTGCGTCGCGCACGAGTTTCTGCTAGGCTACGCCGCGGAGGCGGAC
AAGGCGCGTGAAGGCCACTTCACAACCTGGTCCCCTTACCGGATCAAGAG
CTTCGAAGTCAGGAAGTTTGGCCCCAAGGAATTCCTCGCCCACCGATAGA
TCTGACGGGGATCCCTGGAAGTTCCAAGCTATACTTTTTCACGGGAACAG
AGGAGGAGCAGGAGGATGTGCAGGATACCTGTAGTCTTGTGTGGGCTACA
AGTGTGGGGGTGCAGACAGACGATTCTGGGGTGGAAGCGGCCGGAGGTAA
GGTGTTGACGGCTAGGAAGTGGGTGGTAGACGAGTCCAGGGCGAGGAAAT
GGACCGCCCCCAAGAACTTCACCAGATCTTGGA
back to top

protein sequence of EsuBft1363_7a-0001

>EsuBft1363_7 ID=EsuBft1363_7|Name=EsuBft1363_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=285bp
MSSSVVADEDQLHEKGREHAEAIQERASKRGNQQAAAAAAAAAAAGKGRR
KGADAALSNPLALAHDGGTRSGATPEASREEQASEERRSSALELTQKDHM
LMERVRVMLGASAADQAAAKEAVVNAANTRALRASLQALKWHSNSSIGWT
AYTTALATAAGAGEHTCPDPNLCHPGNRCKPAEPGGVSFAERAKSLGIRY
ETFGDARFRMHNTNHDIAPRDAVSDGCYVYNERKTRSDVTNPEVMALAKA
FWHSDDVSRATGNSGKLLRRARVSARLRRGGGQGA
back to top

mRNA from alignment at Scaffold_372:419247..421089+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1363_7a-0001 ID=EsuBft1363_7a-0001|Name=EsuBft1363_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1843bp|location=Sequence derived from alignment at Scaffold_372:419247..421089+ (Ectocarpus subulatus male Bft15b)
CATCCTGTTTCACCATGAACATGAGGACGACTCATGCCTCGTTCTCCACG
GCAATCGACTCCGCTTGATCGAACTACATGCAGAGGACACCACTCTCGAG
GTCTTCAGCCCTAAACTCCAACATCTACAGCCGTGCCGACTCGGGCCTGG
CCGTGGCTCGTTGCAGTCTCATGCTTGTAGACCGCATAATCCACGTCCGC
GGGGAAAAGAGGATAGTAAAGGCAGCACCGGAAGAAGCACAACCGCGGGA
TACTGTTAACCTCCTTGTTGTTAAAGAAGGCTACCACCAAGGCAGCTGGC
AGTATGTCGTCCTCTGTAGTTGCTGATGAAGATCAGCTCCACGAAAAGGG
TAGAGAGCATGCTGAAGCCATCCAGGAACGAGCATCAAAGCGTGGCAACC
AACAGGCTGCCGCTGCTGCTGCTGCTGCTGCTGCTGCGGGGAAGGGGAGG
CGCAAGGGGGCGGACGCAGCTCTCTCCAACCCTCTAGCATTGGCTCACGA
TGGCGGGACGAGAAGCGGGGCTACCCCAGAGGCTTCGCGCGAGGAGCAGG
TGAGGTTTTGGGTTGTTGAAGTGCTGTTGAAATGCTTGGACTACAATTGT
ACTTCTTGGCGCCAATTCGTGCCGCTCTATATTTATGTACAGTACAGTCG
TCCCGCTTTAAAGACACATCACGTTTCTTTCGGGTGTCTTTTACGCAGGG
AAGTGCCTTTAAGATTCCGGGGCCACTAACTCACTGTCCCCGGGGCCAAT
GGTAGCGTAGAACGCGCATGAAAAGTTGCATGGGATTACTGTTGTACTTG
TTGCAGTCACTCTTCTACGTATGGCATTTGTTGTTGGCCCACCCATACTC
CTGCTGAATATCACACACACCCTCCCCCGACTCCAACAATTCCTGATAGA
TGTACGCAGGCTTCGGAGGAGCGTCGCTCTAGCGCGCTGGAGTTGACCCA
GAAAGACCACATGTTGATGGAGCGAGTACGGGTCATGCTGGGGGCGAGCG
CTGCAGACCAGGCAGCAGCTAAGGAGGCGGTGGTCAACGCGGCGAACACT
CGCGCGCTCCGTGCCTCGCTCCAAGCGCTGAAGTGGCACAGCAACAGCTC
GATAGGGTGGACCGCGTACACGACAGCGCTCGCCACAGCAGCGGGAGCGG
GGGAGCACACGTGTCCTGACCCCAACCTGTGCCACCCTGGCAACCGGTGC
AAGCCCGCTGAGCCTGGTGGAGTGAGCTTTGCCGAGCGAGCCAAGAGTCT
CGGCATTCGGTACGAGACTTTCGGCGACGCACGTTTCCGGATGCACAACA
CGAACCACGACATCGCCCCCAGGGACGCTGTGAGTGACGGGTGCTACGTG
TATAACGAGCGCAAGACACGGAGTGACGTGACGAATCCCGAGGTAATGGC
TCTCGCCAAGGCTTTTTGGCACTCCGACGACGTTTCCCGTGCAACAGGAA
ATTCAGGCAAGTTGCTGCGTCGCGCACGAGTTTCTGCTAGGCTACGCCGC
GGAGGCGGACAAGGCGCGTGAAGGCCACTTCACAACCTGGTCCCCTTACC
GGATCAAGAGCTTCGAAGTCAGGAAGTTTGGCCCCAAGGAATTCCTCGCC
CACCGATAGATCTGACGGGGATCCCTGGAAGTTCCAAGCTATACTTTTTC
ACGGGAACAGAGGAGGAGCAGGAGGATGTGCAGGATACCTGTAGTCTTGT
GTGGGCTACAAGTGTGGGGGTGCAGACAGACGATTCTGGGGTGGAAGCGG
CCGGAGGTAAGGTGTTGACGGCTAGGAAGTGGGTGGTAGACGAGTCCAGG
GCGAGGAAATGGACCGCCCCCAAGAACTTCACCAGATCTTGGA
back to top

Coding sequence (CDS) from alignment at Scaffold_372:419247..421089+

>EsuBft1363_7a-0001 ID=EsuBft1363_7a-0001|Name=EsuBft1363_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=858bp|location=Sequence derived from alignment at Scaffold_372:419247..421089+ (Ectocarpus subulatus male Bft15b)
ATGTCGTCCTCTGTAGTTGCTGATGAAGATCAGCTCCACGAAAAGGGTAG
AGAGCATGCTGAAGCCATCCAGGAACGAGCATCAAAGCGTGGCAACCAAC
AGGCTGCCGCTGCTGCTGCTGCTGCTGCTGCTGCGGGGAAGGGGAGGCGC
AAGGGGGCGGACGCAGCTCTCTCCAACCCTCTAGCATTGGCTCACGATGG
CGGGACGAGAAGCGGGGCTACCCCAGAGGCTTCGCGCGAGGAGCAGGCTT
CGGAGGAGCGTCGCTCTAGCGCGCTGGAGTTGACCCAGAAAGACCACATG
TTGATGGAGCGAGTACGGGTCATGCTGGGGGCGAGCGCTGCAGACCAGGC
AGCAGCTAAGGAGGCGGTGGTCAACGCGGCGAACACTCGCGCGCTCCGTG
CCTCGCTCCAAGCGCTGAAGTGGCACAGCAACAGCTCGATAGGGTGGACC
GCGTACACGACAGCGCTCGCCACAGCAGCGGGAGCGGGGGAGCACACGTG
TCCTGACCCCAACCTGTGCCACCCTGGCAACCGGTGCAAGCCCGCTGAGC
CTGGTGGAGTGAGCTTTGCCGAGCGAGCCAAGAGTCTCGGCATTCGGTAC
GAGACTTTCGGCGACGCACGTTTCCGGATGCACAACACGAACCACGACAT
CGCCCCCAGGGACGCTGTGAGTGACGGGTGCTACGTGTATAACGAGCGCA
AGACACGGAGTGACGTGACGAATCCCGAGGTAATGGCTCTCGCCAAGGCT
TTTTGGCACTCCGACGACGTTTCCCGTGCAACAGGAAATTCAGGCAAGTT
GCTGCGTCGCGCACGAGTTTCTGCTAGGCTACGCCGCGGAGGCGGACAAG
GCGCGTGA
back to top