EsuBft1363_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1363_6a-0001
Unique NameEsuBft1363_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_372contigScaffold_372:421091..421535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1363_6
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length44
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_6aEsuBft1363_6aEctocarpus subulatus male Bft15bgeneScaffold_372 421091..421535 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_6a-0001-exonEsuBft1363_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_372 421091..421535 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_6a-0001-exonagat-five_prime_utr-2170Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_372 421091..421154 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_6a-0001-cdsEsuBft1363_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_372 421155..421535 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_6a-0001EsuBft1363_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_372 421155..421535 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1363_6a-0001 ID=EsuBft1363_6a-0001|Name=EsuBft1363_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=445bp|location=Sequence derived from alignment at Scaffold_372:421091..421535+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTGCGGGTTCGGGGCGCATCGTGCTACTGCACGGCTTGCCGAGCAGGCT
GCTACGATGACTGCATGGTTGCGAAGGTGTACCCCGACTTGGTTGGCAAG
GTGATGGAGAAGTCGGGAAAGGAGAAGGTTGGGAGACGCACGCTTGGGCC
TCAATTGACCGGCGGTATTGTTCCGGTGATTCCTTCGGACGAGTCTCCAG
TGGCGCCTACTCCCAACCCCATGCCTAGTCCGACGCTTGACGAGAGCATG
GGGGAGAAGGAAGATGGGGAGGAGGAGATGGAGGAGGAGAGGGAGGAGGA
AGAGGACGAAGAGGAAGAGGAGGAGGAGGAGGATGGGGAGGAGGAGGAAG
AGGAGAGGGAGGAAGAGGAGAAGGAGGAAGAGAGATACGAGAGCTCAAGG
GGGCCCGTACGCGTTGCGAAGAGGAGGTTCTCGGAGTTGGGCTAG
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protein sequence of EsuBft1363_6a-0001

>EsuBft1363_6 ID=EsuBft1363_6|Name=EsuBft1363_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=126bp
MVAKVYPDLVGKVMEKSGKEKVGRRTLGPQLTGGIVPVIPSDESPVAPTP
NPMPSPTLDESMGEKEDGEEEMEEEREEEEDEEEEEEEEDGEEEEEEREE
EEKEEERYESSRGPVRVAKRRFSELG
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mRNA from alignment at Scaffold_372:421091..421535+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1363_6a-0001 ID=EsuBft1363_6a-0001|Name=EsuBft1363_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=445bp|location=Sequence derived from alignment at Scaffold_372:421091..421535+ (Ectocarpus subulatus male Bft15b)
GTTGCGGGTTCGGGGCGCATCGTGCTACTGCACGGCTTGCCGAGCAGGCT
GCTACGATGACTGCATGGTTGCGAAGGTGTACCCCGACTTGGTTGGCAAG
GTGATGGAGAAGTCGGGAAAGGAGAAGGTTGGGAGACGCACGCTTGGGCC
TCAATTGACCGGCGGTATTGTTCCGGTGATTCCTTCGGACGAGTCTCCAG
TGGCGCCTACTCCCAACCCCATGCCTAGTCCGACGCTTGACGAGAGCATG
GGGGAGAAGGAAGATGGGGAGGAGGAGATGGAGGAGGAGAGGGAGGAGGA
AGAGGACGAAGAGGAAGAGGAGGAGGAGGAGGATGGGGAGGAGGAGGAAG
AGGAGAGGGAGGAAGAGGAGAAGGAGGAAGAGAGATACGAGAGCTCAAGG
GGGCCCGTACGCGTTGCGAAGAGGAGGTTCTCGGAGTTGGGCTAG
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Coding sequence (CDS) from alignment at Scaffold_372:421091..421535+

>EsuBft1363_6a-0001 ID=EsuBft1363_6a-0001|Name=EsuBft1363_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=381bp|location=Sequence derived from alignment at Scaffold_372:421091..421535+ (Ectocarpus subulatus male Bft15b)
ATGGTTGCGAAGGTGTACCCCGACTTGGTTGGCAAGGTGATGGAGAAGTC
GGGAAAGGAGAAGGTTGGGAGACGCACGCTTGGGCCTCAATTGACCGGCG
GTATTGTTCCGGTGATTCCTTCGGACGAGTCTCCAGTGGCGCCTACTCCC
AACCCCATGCCTAGTCCGACGCTTGACGAGAGCATGGGGGAGAAGGAAGA
TGGGGAGGAGGAGATGGAGGAGGAGAGGGAGGAGGAAGAGGACGAAGAGG
AAGAGGAGGAGGAGGAGGATGGGGAGGAGGAGGAAGAGGAGAGGGAGGAA
GAGGAGAAGGAGGAAGAGAGATACGAGAGCTCAAGGGGGCCCGTACGCGT
TGCGAAGAGGAGGTTCTCGGAGTTGGGCTAG
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