EsuBft1363_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1363_5a-0001
Unique NameEsuBft1363_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_372contigScaffold_372:431307..436376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1363_5
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Length140
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_001180.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_5aEsuBft1363_5aEctocarpus subulatus male Bft15bgeneScaffold_372 431307..436376 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_5a-0001EsuBft1363_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_372 432235..436269 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_5a-0001-exonagat-exon-2056Ectocarpus subulatus male Bft15bexonScaffold_372 431307..432294 -
EsuBft1363_5a-0001-exonEsuBft1363_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_372 432585..432664 -
EsuBft1363_5a-0001-exonagat-exon-2054Ectocarpus subulatus male Bft15bexonScaffold_372 433003..433064 -
EsuBft1363_5a-0001-exonagat-exon-2053Ectocarpus subulatus male Bft15bexonScaffold_372 433790..433904 -
EsuBft1363_5a-0001-exonagat-exon-2055Ectocarpus subulatus male Bft15bexonScaffold_372 436221..436376 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_5a-0001-exonagat-three_prime_utr-3293Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_372 431307..432234 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_5a-0001-cdsEsuBft1363_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_372 432235..432294 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_5a-0001-exonagat-five_prime_utr-2169Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_372 436270..436376 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1363_5a-0001 ID=EsuBft1363_5a-0001|Name=EsuBft1363_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1401bp|location=Sequence derived from alignment at Scaffold_372:431307..436376- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTACTACCCCCCCGCTCTAACAAGCCTGCCTACAGCAGTACTGTGCTGCC
CACCCGCCTTCTTTCTCCCACCACACAGTCTGCACGCAACACACGGAACA
CAAAGGCATGCCCACACGTCGGCTCTGGCTTTCGTCTGCTGATCTGAGAG
AGCGAGGTTGGCAAGACTTGTTTCCTCCACCGACTCCTACGTTCCGTGAA
GTCGGGGCTTCGCCAATGATCAGCAAGAGCAAGACCCGTGAGGCCCGCAA
GCGACGTCCCGCGCTACGAAGGTCTCACCTCCTGGTGGCAATTGCGATGT
CAGCCATGACTGTGAGGATCGTGGAAAGCAACAGGCTGGTTGAGTTTCCG
TCTGGTGCCAGGTGCATGTGGAAAAACCTGCCGCACCCGGTTCAGTTCGC
GATCATATTTCTGTCCACCGGATTTTCGGCAAGCTTGACAACGCAGCGTA
CGCTCGGCTATCTCGTGCCGTAACTGCTTGGATGAATGAGAGGCGGCATG
CACATCAAGGTTAGTCGAAGACGCGCGACGGCATCGGGGGCTGGACGCTA
TTGCACTACCATAGGACTTCAAGAGAGTTGGAATTCGATAGGTACCAATT
TGCCTTTCTGCGGCGGTGAGGCAGTTTTCAGGGTAAGGATTCCACGGGTT
CGCTTCGGTACTGTAGGGCCCTCGCGTACGATTTGCTGCGAATGCGCGCG
ATACATCGATGCGGCCACCTTGCACGACAAGAGATGTTGCGTGGGGAGGC
GGCCAATATGTGTAAGTACACTCGAGAGGATTTATTTGTTGCTCCTTGTT
TCGTGTTTGTGTTTTTCCAGCATGCCTCCGTCTAGTAGTCATGAGCTGTG
CACCATAGCCTTGTCAAGAGTTCAGTGCACGCTTGAGGGGGCTCAAGGAC
AGCAGTAAACGGTGCGCAATGTGTATATATCTCGTTTTACACGTCCATTG
GTACAAAGGCGGCGTCCAGGGGAAAATTGGCAAAGCCACCGCCAGGATAG
CCGCGTGTTTTTTACGAATGTGTGGTGCTGTCAGCAATGGTTTCCCCTTC
ATGTTTCGGCTTAGGCAGGCGTAAGTAGGCCAGACTCGCAACATCGGTCG
TTGCTAGCCGCTGGTATCTTCCATAAAAAAGGGGTTGGGTATGGTGAAGG
GTTTGAAGCCATGTGTAAATATCGTACTCTACAGATAACGTTTTGAATCT
GCAGCACGGGTGCTTCTGTTGCCCGGCGTTTCGTTCATACCCTGTCCTGT
CTACTCGACGGGGGGTGGTAAGAGAGTAGCAGTTCGCATTCTTGTTGCCT
TGCTTTCAATGCCGGTGGAAACGGTGCTGCTTCGTATCCACGAGGGGCAG
GGAAGGGGAAGTTTCGATTAAGAACGCCACTTACGGATCACAATCCGAAC
A
back to top

protein sequence of EsuBft1363_5a-0001

>EsuBft1363_5 ID=EsuBft1363_5|Name=EsuBft1363_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=121bp
MPTRRLWLSSADLRERGWQDLFPPPTPTFREVGASPMISKSKTREARKRR
PALRRSHLLVAIAMSAMTVRIVESNRLVEFPSGARCMWKNLPHPVQFAII
FLSTGFSASLTTQRTLGYLVP
back to top

mRNA from alignment at Scaffold_372:431307..436376-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1363_5a-0001 ID=EsuBft1363_5a-0001|Name=EsuBft1363_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5070bp|location=Sequence derived from alignment at Scaffold_372:431307..436376- (Ectocarpus subulatus male Bft15b)
GTACTACCCCCCCGCTCTAACAAGCCTGCCTACAGCAGTACTGTGCTGCC
CACCCGCCTTCTTTCTCCCACCACACAGTCTGCACGCAACACACGGAACA
CAAAGGCATGCCCACACGTCGGCTCTGGCTTTCGTCTGCTGATCTGAGAG
AGCGAGGTAAGTGGAACCGCCACGTGCTGCACCGCTACGATTTTGATTCA
AAACCAAACTGACTTCATCGCGTGTCAGGTGCTGTTTGATGTTCCGCCCA
CACCGACTCAGATTAAACTGCGAGCGCATGCTCTCTTAGTTTTCACCAAG
TGCCGGACATAATCGAACGTCCAAGGCGGTCATGACGCGTCGCGTGTTGC
TGGTGTGTTTCATATCTTTGTGTTGGCGTGCTGCGGGCGGCGCGGTTGGG
ATTAAGGGTAAGTTGAACCGCTCGCGGGTGTGTAGTGTATTACCCCGAGA
CGCTGAAAAGATGGAGACACGCGAGGCATCTCCTCCCGGGGGTGCTTGAA
CAGAGAGAGAGATACATAGCAAATGGTCTAAACGTGCTAGTTATGCTTGT
GCTTGTAGATTCGTAGGCATGCGCACGATGTACCTCGATGGGAAATTATT
TCTTTATCGGCCGTTCTTTAGGGTTGAAGTTGGCGCCTTGGCTCCAGAGG
CGGTTTGCTCTCTGCTTGGGTTGACAACACGATCTTGCTCACGATTTCTT
TGGTGTGAGAAAACGCCAAGAACGAAGCAGGCAAGCGTAATAGTCTTTGT
ATCGCAAGCACCCCTTGTGTCTTTTGGGCTGAACAAACCCTCGGGTGCTT
AACAAGTTACACAACGTGATGACACGATAGGGTATCGAGTTGTTTTTCTT
GTGTGTTCAGTCGCAGCAGGTCAGGTACGATTTGTCATCCGGAATGTCCC
TTTACTCCGTAGCAAGCCACACCGCGGCAGAAGGACTGCACTTTTTCGGG
ATCAAATGCACGAGTGCTGCCCGCCAGACATCATTGGCAATAGCGTCAAA
ATATTGAACAGCGAGCGTGCTGTATTATTTCCCCTGTATCCAAGGTTTTG
AACAGGTCACGACCTGACCTGATCCATAGGACTTTCACCGATCAGCACAG
GCCGTGAAGTTGATCGGATCTGAACTTCCACACGGACGGATACTTGTACA
TGGTTGAGAGGATTATGTAGAAGCATGGTTCGCGCGCAGCCATCCCTCGA
ATACATGTATTATGTGGCCGTCGATGGAGAGATGAGGTCGTCATCAAACG
CCAGGCCGAGGCTGCACACAACACGGCCCACTGCTGGTTTCACATGTCAA
TCCCTGAAGACGCTGGTGGAGACATGTCAATCGTTCTTTATCTTGTTCGA
GAGCAATGCCGACTGTTTCCTTTTTCTCTTTGGCTGACTTACAAAAATGC
AGGGGGGCGGTGCCAACTGCTAAATAGAAGGAGCCGATAAGGGATTAGAG
ACAAGCAATGTTGACGCTGGCTCCATTTCAATACATAAAACCCAAAATAA
AAAAGAATAGCACCCTCCCCGCCGTTTTGGTTCTATGCGTTCTACTGTTA
TCAGTAGAAGACACCACGAAGAGGCATGTCCTGTGCGCTGCCACGTTTAG
GTTTGCTGCTGGAGCTGAAATATCGAACGTCGCGGCAGCCCCTGAAACCA
GCCCGAAATCCGCGCCGGAACTTGCCAGAACCACACACTTTTCACAGCCG
TGCTCACCGCCACGGACGGTAACCCCAAAACGGTGGATCGTCAGCAGCAG
CTAGTGGCATCAGCTACTGCATTCCACCCGCAGTTCAGGAGATTGGGGCT
GGCGGTAGCGAGCCCAAGAAGTACAACACGCATGGTGTCGGTCTAATTTG
CCTAGATTTGTGAGGTCGCAGGCCACTACTACGACCCTCGATATCACCAC
TATCCATGAAGCAGATTTGAGCGCGCCAACACACACCGCTGCTATATGGT
GTCCTCTAGTGATATCAGTAGAATGCATTGAACCTACAAATAGTGCAAAC
CCGACCTTGTCTGAGCGTCTACCGATCGATTTGGCTCTATTGACTTGACT
TAAGGTTGGTGTGACATTATCTTGATTTCAAAGGAGGAGTCATGCGGAGG
TAGACGCGTGAACTACATGTTTAGAGCAGCCTCTAGTGCCGCCCTGCGCG
AAAATTTACCATTTCTGTTTTTCGCGTTGCCTTCCGACTGGCGTTGTGAG
TCTCTTTAAGCATTTTCTGGTGCTCTTGAGTTTGTTTTCAAAATTGGTCA
GCATCGAAAATCCACGTCTTCCAACGCTACTCATCCCGTGACAATATTAC
CCCATGACTTGGACTTCCAGCTATATCCTGCCATTCTTTCCCGAGGACTA
CCGTTCAGATTTCTTGTACGCAGATCCCGCAACAGCACGTACAGCCTTTG
GACCCTCTAAAATTGATGGTTACCACGTACAGCTCACAGCATGGACTACT
GCTTCTGTTGTCTCGTCAATAGGTTGGCAAGACTTGTTTCCTCCACCGAC
TCCTACGTTCCGTGAAGTCGGGGCTTCGCCAATGATCAGCAAGAGCAAGA
CCCGTGAGGCCCGCAAGCGACGTCCCGCGCTACGAAGGTACACATGACCA
AACGGGATGCAAAATACGGGCGTAACTAACCCACCAACGACCTGGCGACC
CATCCGCGAACCATCTTATTCATGTGATACCTGCGGCATTCGGGATCTTT
TCGGACGCTTGGAGCGCCTTTGAGTAGTGTCGGTTGGAGCTGTTGTCGCT
TGAAGGATGGTACTGTAGTTCTGCAGCGTTTGGCGTTGTTTTCTACAGTA
GGTCTCCCTGAAGCGTTCGGTATAGAAGTTGTGGAGCGCATGTGGGACGA
CGGCAGTTTCTCTTCTAGAAGTCAATATGGAATCACGAGGCCTCCGCAAG
GGTGTTCCTGTTGCGAGGTGCATATTTTGAGGAAGGAAGGTGGCCCTATT
CAGGGCTCCCATACATACGTATTCGACCTGGTGTGCATGGTTCGAGTATG
GTCGCACATGCGATGACGGCTATGTCGCAGCACCGGAAACTCCCATCGCC
TCTGCCACTCGGGGCATTGACACTTTTGGGCGTTCCCGTGGAACGCACAC
CCCCACATTGGTGCGGCCGGAGACGAGCGGTTTTGGAACTGTCATGGGCA
ACGATCCTTGTCACATGACTGTCATTTACGTTGCTCAGTAATTCTTGCCT
GCTTCACGCACACATGCATGCAGTGACCGCTTGATCTTCCCTGTGGAGAT
TCGTCTCATGTGATATTGCCGTGCTCCCGCTTGTCTGTTACCATTGTACG
CCACTGCGGTAGGTCTCACCTCCTGGTGGCAATTGCGATGTCAGCCATGA
CTGTGAGGATCGTGGAAAGCAACAGTGAGCGGCGAAGACTCATCATGTTG
TCGGCGGTGTTGGGCTGGGGGGGGTCTGCCTACGGCGTCGAAGTTGGAAA
CGCTGTGTCCGTCCTGCTCATGACCCCGCGATAGCCTACCGGAAATACTG
CATGATACATGATATCGAGTGCAGCTACAGCTTCAAGTGCGGTGGATGTA
CCTGTCTGGGGGTAATCGTTAGTGTTTTTTGGTGGCGCATCAGCACAAAT
GCCCAGGACTCCTAGCGTGTGTCTTGTAGGCTAGCGGAGGTGTGAAATGC
GCACATGGGTTTTCGATTCCTCCCCCTCACCGGTGACTTTGCTTCTGGTG
CGCGCCGAGCAGGGCTGGTTGAGTTTCCGTCTGGTGCCAGGTGCATGTGG
AAAAACCTGCCGCACCCGGTTCAGTTCGCGATCATATTTCTGGTGAGTGA
GCGCAATGTTGACTATGCCCTCCACGCTGCAACGTGAGGTCATTTGGGTC
AACAATTCCGTTGAATAGATGTATTTGCTACGTTGTTGGGCCTTTCGGGC
ATGCTGCTGCCGCTTTGTGCCTCCAGTACAACATCAAGCGGCCGGACGTA
TCGATGGCCGCCAGTCGAACAAGCCCAACTTGACGTGTCGTCATGACGAA
ACCGAGCTCATTTCGACTTTGGCGGCGTGGTGCGTTATGGTGCCCCGACT
CCCGCCACACATGCTTGCGCTCCTGTTCGCAGTCCACCGGATTTTCGGCA
AGCTTGACAACGCAGCGTACGCTCGGCTATCTCGTGCCGTAACTGCTTGG
ATGAATGAGAGGCGGCATGCACATCAAGGTTAGTCGAAGACGCGCGACGG
CATCGGGGGCTGGACGCTATTGCACTACCATAGGACTTCAAGAGAGTTGG
AATTCGATAGGTACCAATTTGCCTTTCTGCGGCGGTGAGGCAGTTTTCAG
GGTAAGGATTCCACGGGTTCGCTTCGGTACTGTAGGGCCCTCGCGTACGA
TTTGCTGCGAATGCGCGCGATACATCGATGCGGCCACCTTGCACGACAAG
AGATGTTGCGTGGGGAGGCGGCCAATATGTGTAAGTACACTCGAGAGGAT
TTATTTGTTGCTCCTTGTTTCGTGTTTGTGTTTTTCCAGCATGCCTCCGT
CTAGTAGTCATGAGCTGTGCACCATAGCCTTGTCAAGAGTTCAGTGCACG
CTTGAGGGGGCTCAAGGACAGCAGTAAACGGTGCGCAATGTGTATATATC
TCGTTTTACACGTCCATTGGTACAAAGGCGGCGTCCAGGGGAAAATTGGC
AAAGCCACCGCCAGGATAGCCGCGTGTTTTTTACGAATGTGTGGTGCTGT
CAGCAATGGTTTCCCCTTCATGTTTCGGCTTAGGCAGGCGTAAGTAGGCC
AGACTCGCAACATCGGTCGTTGCTAGCCGCTGGTATCTTCCATAAAAAAG
GGGTTGGGTATGGTGAAGGGTTTGAAGCCATGTGTAAATATCGTACTCTA
CAGATAACGTTTTGAATCTGCAGCACGGGTGCTTCTGTTGCCCGGCGTTT
CGTTCATACCCTGTCCTGTCTACTCGACGGGGGGTGGTAAGAGAGTAGCA
GTTCGCATTCTTGTTGCCTTGCTTTCAATGCCGGTGGAAACGGTGCTGCT
TCGTATCCACGAGGGGCAGGGAAGGGGAAGTTTCGATTAAGAACGCCACT
TACGGATCACAATCCGAACA
back to top

Coding sequence (CDS) from alignment at Scaffold_372:431307..436376-

>EsuBft1363_5a-0001 ID=EsuBft1363_5a-0001|Name=EsuBft1363_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=366bp|location=Sequence derived from alignment at Scaffold_372:431307..436376- (Ectocarpus subulatus male Bft15b)
ATGCCCACACGTCGGCTCTGGCTTTCGTCTGCTGATCTGAGAGAGCGAGG
TTGGCAAGACTTGTTTCCTCCACCGACTCCTACGTTCCGTGAAGTCGGGG
CTTCGCCAATGATCAGCAAGAGCAAGACCCGTGAGGCCCGCAAGCGACGT
CCCGCGCTACGAAGGTCTCACCTCCTGGTGGCAATTGCGATGTCAGCCAT
GACTGTGAGGATCGTGGAAAGCAACAGGCTGGTTGAGTTTCCGTCTGGTG
CCAGGTGCATGTGGAAAAACCTGCCGCACCCGGTTCAGTTCGCGATCATA
TTTCTGTCCACCGGATTTTCGGCAAGCTTGACAACGCAGCGTACGCTCGG
CTATCTCGTGCCGTAA
back to top