EsuBft1363_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1363_4a-0001
Unique NameEsuBft1363_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_372contigScaffold_372:438363..438758 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6334.EFV58439
ProteomeIdEsuBft1363_4
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon1
Max annot lvl33208|Metazoa
Length396
Hectar predicted targeting categoryother localisation
Evalue3.34e-24
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria,40FC4@6231|Nematoda
Date last modified2016-06-14
Date creation2016-06-14
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003824
GO0005488
GO0090304
GO0016740
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_4aEsuBft1363_4aEctocarpus subulatus male Bft15bgeneScaffold_372 438363..438758 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_4a-0001-exonEsuBft1363_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_372 438363..438758 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_4a-0001-cdsEsuBft1363_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_372 438363..438758 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_4a-0001EsuBft1363_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_372 438363..438758 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1363_4a-0001 ID=EsuBft1363_4a-0001|Name=EsuBft1363_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=396bp|location=Sequence derived from alignment at Scaffold_372:438363..438758- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTGCAGGAGGGGCGATTGCATGGTTCTCCAAGACTCAAAAGTGTGT
GACTTTGTCTACCACGCAGGCAGAATACGTGGCGGTGGCGGACATGGGGA
AGGAGATTTTGTTTTTGAGGCAGGTTTGGCGTTTCATGTTGCCTAAGGAG
TTGCGGCCGTGCATTCCCCTGTATGAGGATCACGAGGGGGCTATCCAGAT
AGCAATACACCCGATCTCGAATTTCAACTCGAAGCACATCGACGTGCGGC
ATCACTTCCTCAGGCAGCTCGTAGATGAGAAGGAGGTAGAGATCATCCAC
GTAGCGTCGAAGTATCAGCATGCCGACTTCCTCACGAAGGCGCTACCTGA
GAGAGAGTTTGTTTCCCACCGGGACTACGTGATGAACTTGAAGTGA
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protein sequence of EsuBft1363_4a-0001

>EsuBft1363_4 ID=EsuBft1363_4|Name=EsuBft1363_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=131bp
MCAGGAIAWFSKTQKCVTLSTTQAEYVAVADMGKEILFLRQVWRFMLPKE
LRPCIPLYEDHEGAIQIAIHPISNFNSKHIDVRHHFLRQLVDEKEVEIIH
VASKYQHADFLTKALPEREFVSHRDYVMNLK
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mRNA from alignment at Scaffold_372:438363..438758-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1363_4a-0001 ID=EsuBft1363_4a-0001|Name=EsuBft1363_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=396bp|location=Sequence derived from alignment at Scaffold_372:438363..438758- (Ectocarpus subulatus male Bft15b)
ATGTGTGCAGGAGGGGCGATTGCATGGTTCTCCAAGACTCAAAAGTGTGT
GACTTTGTCTACCACGCAGGCAGAATACGTGGCGGTGGCGGACATGGGGA
AGGAGATTTTGTTTTTGAGGCAGGTTTGGCGTTTCATGTTGCCTAAGGAG
TTGCGGCCGTGCATTCCCCTGTATGAGGATCACGAGGGGGCTATCCAGAT
AGCAATACACCCGATCTCGAATTTCAACTCGAAGCACATCGACGTGCGGC
ATCACTTCCTCAGGCAGCTCGTAGATGAGAAGGAGGTAGAGATCATCCAC
GTAGCGTCGAAGTATCAGCATGCCGACTTCCTCACGAAGGCGCTACCTGA
GAGAGAGTTTGTTTCCCACCGGGACTACGTGATGAACTTGAAGTGA
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Coding sequence (CDS) from alignment at Scaffold_372:438363..438758-

>EsuBft1363_4a-0001 ID=EsuBft1363_4a-0001|Name=EsuBft1363_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=396bp|location=Sequence derived from alignment at Scaffold_372:438363..438758- (Ectocarpus subulatus male Bft15b)
ATGTGTGCAGGAGGGGCGATTGCATGGTTCTCCAAGACTCAAAAGTGTGT
GACTTTGTCTACCACGCAGGCAGAATACGTGGCGGTGGCGGACATGGGGA
AGGAGATTTTGTTTTTGAGGCAGGTTTGGCGTTTCATGTTGCCTAAGGAG
TTGCGGCCGTGCATTCCCCTGTATGAGGATCACGAGGGGGCTATCCAGAT
AGCAATACACCCGATCTCGAATTTCAACTCGAAGCACATCGACGTGCGGC
ATCACTTCCTCAGGCAGCTCGTAGATGAGAAGGAGGTAGAGATCATCCAC
GTAGCGTCGAAGTATCAGCATGCCGACTTCCTCACGAAGGCGCTACCTGA
GAGAGAGTTTGTTTCCCACCGGGACTACGTGATGAACTTGAAGTGA
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