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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
ProteomeId | EsuBft1363_3 |
Protein domains | NON_CYTOPLASMIC_DOMAIN |
Protein domains | SIGNAL_PEPTIDE |
Protein domains | SignalP-noTM |
Protein domains | SIGNAL_PEPTIDE_N_REGION |
Protein domains | SIGNAL_PEPTIDE_H_REGION |
Protein domains | SIGNAL_PEPTIDE_C_REGION |
Owner | apollo_admin@sb-roscoff.fr |
Nb exon | 4 |
Length | 347 |
Hectar predicted targeting category | signal peptide |
Ec32 ortholog description | expressed unknown protein |
Ec32 ortholog | Ec-13_003750.1 |
Date last modified | 2016-06-14 |
Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1363_3a-0001 ID=EsuBft1363_3a-0001|Name=EsuBft1363_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3476bp|location=Sequence derived from alignment at Scaffold_372:445469..451360- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGAACGAGCTCATCATGGTCGCCTTCGGCGTTGCCGTTATCCAGCAGCT ATTGTCTTCGCTCACAACGGACACACCGGGAGCCGTTTCCGCGGAAGATG CGGCCGACTTTGCCGAAAGCTTTGCAAGGAGCTGCTTGTTGCCCCAGCCC CCCGACCAAAGCGAGGCCCTCGTACCGTGGCCCGCTGTCTCCGCGGGTGC TGCAAGAGCGGCATGCCTCGTAGGGTTGAGTTGCGTTGCGGGAGGCATGT TGGACAAGGGCACCTTGTTTCTGTTCGAGGTGGGGTTGAAGACCTTCATC AACTTAATTATAATCCGAAGCCTGCGTTTCCTCGCATCGATGTTTCAAGG ACCATTGTAACAACGCATGCATGGGCGAAGAAAGCCGGGGTGCAGGGGAG GCCCGGATCACAGAGCATGGACACATTGGCGCCGAATCAGGCGCTGAAAA AATAACGGGAGGGGGGTGGGCAACGCGGAATCAGGTTCTAGGGAACGGTT CTGCCGTGTGCGAGGTGCAACGAGGTCTGAGGGAGCAGGCAACGGCGCGG GGGGTGGAATCCCCGGCCGTCGCCGTGGCTCATCAGCATCTTCGGCTGCG ATACGACGGGGAACGCTGTAACGGTCTGTTACCTCGCAATCAGACGCAAA TGTACCAGTCAGTGACGGCAGCTGCAGCTGCTGCAGCAGCAACAGCAACA GCGACATCAACATAAGGAAATCATTCAACAAAGCATTGTGGAGTGTACGG GGTCCCAGATGGAAAATGCCAGGTTAGCACTCGTGTTGGTGGCAAAAGAG GAACTATATAATGTGGTAATGCAACAGAGTGATCGATCTCTCCGTATGAT AGTAAATGGCGATGCGATTGCCCCACCCGGCCCTTGAGATAGCCCGTGAC GATTTAGAAGCATTGCGTGTGCCTCACTGTACCCTGTTCGTTCATTTGGA ATATTGTGGCACTAAACGTCTACAGCCTGTGTTGAGAATTGGACCTGGGA TAAGTTCCGTCTGCCATGGAGTACAGGTTCAGCTCCTAGAATAGCGGGCT GACAAGAGTATGCGATCGATTCGGAACGGTCTGTTGTAATGCATACAAGC TTGGCCTACGAGGGCATCGGTTGATTCCCACGGCATTTTCTGGTGGGGGT TTGTCCCTAGAGCGCTGGCTGCTGAGGCTCAAGACAATTTCGTGGTAGGG TAGACTAGCATACCAGTGGAAGTGTGATGTGGTCTGAGTCTAACTTGCAG CTCGTAGATGTGATTCGCGTACACTACTCGGTTGGTATTGAGTGCTTGGC CTTTGTTGTGTGCACGCGCGTGATGAAAGCACTCTCACGTATGTCACGTG CCTTCACGCTTGCCATGTCTTGGATGAGGCAGATTCGATTCAAGATATTT TTCGGGGCTGAGATACGAAGTATTGGTTTTTGTTCATGTTGGGAATTCTC TGATGCGCCACGATTGTTGCGCTTGGGTATTTCCGCGTCTTTCTTGGAAC ACCTGCTGTGGAGGCCATTATTTTTTGTCGTGTACTCCATGGGATCACGA AGACCGGATGGACAGCGTGGCGGCAAGATCAAGGTCCTTCTGTAGTCGTC GACATAGACCAGGTCAGGTGATCATAGTGTAGCGTGAGGTTGGTTTGTGG TCGTCATTGTGGTGTGCAGGCATCCGAGTTAAAGTGCATGTATGTGGGAG TGAGAGTTATATCGTGATCGTGTGGGCTCGGGGTTTTGAATCCACCGGCG ATGTGTTTGTTTCTGTGTTGTGTGTGTGCATGTGTGGTGTCCGTTTTGTG TTGTGAGCAGGTGGGTGGTAGAACAAACAATGCTGTTCATGTCGAAATGA ATGTTTGTCGCCAACTCGATGTCCCCGTTGGATGCAATTGGTCGTCCTTT TTTCTCCGGCACATCCCTTCTAGTTGTTCCCACCTTCTCATTGGGATTGG CCGGGAGAGGTAGGGGGTGGGTTGTAGGGGTAAGGGGGGTAAGGGCGTGG GGGAGATGGGGAGGAGTGTAAGAAGGTAACGGGAGTAAGGGAGGGTTATG GGGGGTAAGGAGGGTAAGGGAAACATTAGTGATGTTGAAGCCCGATGTAG GGTAACACTACCTCAGCCCTATATATATAGCTGCAGATGGCGCTTCAACA TCCTTTGGAAACCACACGCGAACATACGAAGAGCTCCCACCTTTAAACTG CTGCGGGTACGTGGAGACAATGCTTAGGGCAGAGCATACCACGTCTTGCA TGATGAGTATGGTTCCTTCTATTTTTTAGCGGGATGCCGTCCCTTCTCAC AGCCAGCGGCGAGTGGGGTTGGCTTGACCGTCGAAAGAAAGCGCCGACGA TGCGCACCCTCGGGCTTGGTGGAGATGCGACGGTGGTATTTTGTTCCTGC GGGACAATACCGTTCTGTATGATTCTGGTTGAGCTGAAGTGTCATCTCTT GGTGGTACAGCAGTTGTTAATGTTCGAAAATCGCGGCGGGGGATTTGTAG GTTATGCCACGATTTCTCTCGCTGCAGTTTTTCTTCTTGTTTCCAGGATG GTGTATTATTGGTGGGTTGAATTTCGTGTCTGGAGACTTGTAGCGGGTTG CATTGTGCTATATTTTAATCTACTTGCATTTTGTGTGCGTTGATTCACTT GATGTACCTATTGTGCGCCGTTTCCTGCGATTAAGACGGAGCATTGATTG GATTGGATTAATGTTTTGGGAGATGTTGCAGCAGGGGGCTGTTTAAGATC TTGTGTTCGGGGAGATGATGCAGCAGGAGGGCTATTGAAAATTTCTTCCA TGTTGTCTCGATGTTGGAGAAACGGCATAGTCGAGGAACGGCATTTTGCA GGCGCCGGGGTTTGGACTTTGTTTTATTGCCGTACGTGGTACGGTAATAT TTCCGAGCGATGTATAGGAGGAAGGATTTGGCATATTTTGATTAAGGTAT GGTTGAGGCCTATGTGCTTCCGAAGCTTTTTTGACAATGGTCAGTAAGTT GAAGGATGGTTCTATGCGACGATTTTGTTCGAAGCAATAATTGACGCGTT TTCCCGGAGGCATCCGTCTCGAGTCTTTATGACGCGGCGACTCCGATGTA ATTATTGATCTCTGCTGAACATTTTCCTAGGATAATTATTTGTATTTGAC TGCCTGAGAATCGGTTGCGACGACATTTTCTCGAAAGGGGTGATTGTTAA GACTCTAGTTAAATTCCATCGTGGATTAAGGAGGAATCCTAATATGAAAC TTGAGTATACAGTAGTATAGATCCGGGAGTTGAAATGATCTGTGAATATG AACGATGGAAGGTTTTCAGGGTTTGTTGCCGTTTCACCTGGCGATACGTA CGGAGGATTTCTTCGTAGACCGTGTCTCGTACCGAGTAGGGGGGGTGTTG TGTGTACTCGACAGAGTACGCATCCCCGAGATCTTCGGGGGGTACGCAGA TGTGATATAATAAAGTAACTTGAGCC back to topprotein sequence of EsuBft1363_3a-0001 >EsuBft1363_3 ID=EsuBft1363_3|Name=EsuBft1363_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=119bp
MNELIMVAFGVAVIQQLLSSLTTDTPGAVSAEDAADFAESFARSCLLPQP PDQSEALVPWPAVSAGAARAACLVGLSCVAGGMLDKGTLFLFEVGLKTFI NLIIIRSLRFLASMFQGPL back to topmRNA from alignment at Scaffold_372:445469..451360- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1363_3a-0001 ID=EsuBft1363_3a-0001|Name=EsuBft1363_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5892bp|location=Sequence derived from alignment at Scaffold_372:445469..451360- (Ectocarpus subulatus male Bft15b) ATGAACGAGCTCATCATGGTCGCCTTCGGCGTTGCCGTTATCCAGCAGCT
ATTGTCTTCGCTCACAACGGACACACCGGGAGCCGTTTCCGCGGAAGATG
CGGCCGACTTTGCCGAAAGCTTTGCAAGGAGCTGCTTGTTGCCCCAGCCC
CCCGACCAAAGGTTTGTGTATATTATCATGTGGAATTCTCACACCACTTT
CCTTCTGTTGCTGCACCGAGCACCACATAGCGCGGCGAAAAACCGGACGG
AGTAAATACGCTCCTAAAGTTTTTCGTGTCCGTCTATGTCGTCCGATTTC
ATACTTGTCGCGTACAAACGCCAAGCAGTCGTCCAAAATTTGCTTTGAAT
TTGTCGAGACGTAAGCGAACCACAAAACTGTGTGTTTGGAGTGTTCCCGA
TTCCCCCCCTTAACCCGCGTTTTCCCCATTTGCGCGCCCGTTCGACGTTT
TCCATCAAAAACGATGCAGCGAGGCCCTCGTACCGTGGCCCGCTGTCTCC
GCGGGTGCTGCAAGAGCGGCATGCCTCGGTACGCTTTCTTTAAATGTTTT
TGTCAACGGTTTGGGATCCCAAAACAACCTACACGGTCGGGCATGTACTC
ACCCCCCCTCGTTGTTTACTTCCCCCCCGGGTGGTTGCCATCGGGGTTGG
GTTTTCGTCGCTTGGCAACGACGTTGTAAAACAAGCCACCCCCCCCGGTG
TTTGCCATCGGGGTTGGGTTTTCGTCGCTTGGCAACGACGTTGTAAAACA
AGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCCCCCGGTGTTTGCCATCGGGGTTGGGTTTTCGTCGCTTGGC
ATCGATGTTGTAAAACAAGCCGATCACTTCGTGAGCTCGGCAACCAGGTT
GCCGCTTTTCCTTTTACCTCTGTTATTTTTTTGCGGTAGCCATAACGATG
GTCGAGTAGATTTTGTTGTGCGGGGTGGAGAACCCTCACTCCGCGCAAAG
GGGGTGATCGCACCACGTTGTAATAAATTGGTGAAGCACCCTCGAGGCAG
TTACAGTGTTTTTTTTTTACTGTGGAAGTGAAAGCACCAGAAAATATATT
AAGTCATACGCAGCTGTCATCCGTANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCCCCTGGCAATCTCGCCCCAGTACCTGGCTGGCGTCCGCGACTAGT
TCGATGACGAGCATTTTGGTCACGCCTGTGTTTGTGTTATTTTTTCTCAG
TACTTACTCTTATTGTTTAACGTTGGCATCAATGGCGCAAACCGGCTGAC
CAATGAAGTGTATGAATGTGTGTTCCTCCCATTAATTCTGGCGCCGGTCT
CCACACCTCTCCGTGATTGTATCTATCGCATGTGCCAGCCGGGGTAACAC
AGGAGGAAGGTCGGATTTTTTTTTCCTTTTCTTGTCCTCCTATTCCCTTC
CTTGCGTACTTGCCTTAGGGTTTTTTTGTTGACATTTGTACAATATATTG
TTGCCCACGTTAGCCCTTGGCATGTTCGAGCACAAGCTAGAGAGTCTCGT
GCCTCCCGTCGCGAAGTTCCATGACTTTTCCTTCTTCACGCATCAACCTA
GAACAGGGACCCGTTTGTTAGCCCCCTCACGTTCCCTCAACGGCCGCACT
ACTATATTTCGTGTTTTTTAGACACTATCATTGGTTGATAGGCTACCCCT
TTCGCAGGTCAGTTGATAATCACCCACAGTGCCAGTGTCAGGAGGATCAC
GCCCAAGTCTTTGCTCATCTTCTCTCTGTGTGACAGTCTGTCTCACTCTC
TGTCTCCCTCTCTCTCTCCTGCTTCTCTCTCTCCCTCTCTCTCTCTCTCT
TTCTCTCTCTTCTCTCGAATGCGTCACAATCAATTGCCAGTAGGGTTGAG
TTGCGTTGCGGGAGGCATGTTGGACAAGGGCACCTTGTTTCTGTTCGAGG
TGGGGTTGAAGACCTTCATCAACTTAATTGTGAGAAGGGGATTGCGCACA
CGTTGCTGAAGCCGTTCGGTCATTGTTTTATTGAACTGTCTAGCTTTCCA
CTCGTTTGCCTATGGGTGCTTTGCCCATACATTGGCATGCGTGCATGGAG
TTTTGTAGCCTCGCGTTTGGACACAAGTTTATTGCTCTTTTACCAGTGTC
TATGACACCCCAAGTCCTGATGGCCGCTCACCCTGCTGTGTCGTCCAACC
AAAGTCGGGCGATAGAAGCGGCTTCGGCCGCAAAACAAAAGCGGCTTCGG
CCTCTAAGGGTGGCTGCAAAATCTCCTAGAACATTCCTTCCTCGTTGCAT
CTTCGCCATGGGCGATCACTGTTCGTGAGAAGGGGTCAGTCAGAAGACAA
CCCACACACACCGACGGCCACGCTGACTACTGTTTAAAGTGTCGGAGAGG
TAGTTTCCTAATGATGTGGTGACACTAATAACGTTCGTATGCACCATCCC
TCGTGTGTGTGTCTGTTGTCCAACAGATAATCCGAAGCCTGCGTTTCCTC
GCATCGATGTTTCAAGGACCATTGTAACAACGCATGCATGGGCGAAGAAA
GCCGGGGTGCAGGGGAGGCCCGGATCACAGAGCATGGACACATTGGCGCC
GAATCAGGCGCTGAAAAAATAACGGGAGGGGGGTGGGCAACGCGGAATCA
GGTTCTAGGGAACGGTTCTGCCGTGTGCGAGGTGCAACGAGGTCTGAGGG
AGCAGGCAACGGCGCGGGGGGTGGAATCCCCGGCCGTCGCCGTGGCTCAT
CAGCATCTTCGGCTGCGATACGACGGGGAACGCTGTAACGGTCTGTTACC
TCGCAATCAGACGCAAATGTACCAGTCAGTGACGGCAGCTGCAGCTGCTG
CAGCAGCAACAGCAACAGCGACATCAACATAAGGAAATCATTCAACAAAG
CATTGTGGAGTGTACGGGGTCCCAGATGGAAAATGCCAGGTTAGCACTCG
TGTTGGTGGCAAAAGAGGAACTATATAATGTGGTAATGCAACAGAGTGAT
CGATCTCTCCGTATGATAGTAAATGGCGATGCGATTGCCCCACCCGGCCC
TTGAGATAGCCCGTGACGATTTAGAAGCATTGCGTGTGCCTCACTGTACC
CTGTTCGTTCATTTGGAATATTGTGGCACTAAACGTCTACAGCCTGTGTT
GAGAATTGGACCTGGGATAAGTTCCGTCTGCCATGGAGTACAGGTTCAGC
TCCTAGAATAGCGGGCTGACAAGAGTATGCGATCGATTCGGAACGGTCTG
TTGTAATGCATACAAGCTTGGCCTACGAGGGCATCGGTTGATTCCCACGG
CATTTTCTGGTGGGGGTTTGTCCCTAGAGCGCTGGCTGCTGAGGCTCAAG
ACAATTTCGTGGTAGGGTAGACTAGCATACCAGTGGAAGTGTGATGTGGT
CTGAGTCTAACTTGCAGCTCGTAGATGTGATTCGCGTACACTACTCGGTT
GGTATTGAGTGCTTGGCCTTTGTTGTGTGCACGCGCGTGATGAAAGCACT
CTCACGTATGTCACGTGCCTTCACGCTTGCCATGTCTTGGATGAGGCAGA
TTCGATTCAAGATATTTTTCGGGGCTGAGATACGAAGTATTGGTTTTTGT
TCATGTTGGGAATTCTCTGATGCGCCACGATTGTTGCGCTTGGGTATTTC
CGCGTCTTTCTTGGAACACCTGCTGTGGAGGCCATTATTTTTTGTCGTGT
ACTCCATGGGATCACGAAGACCGGATGGACAGCGTGGCGGCAAGATCAAG
GTCCTTCTGTAGTCGTCGACATAGACCAGGTCAGGTGATCATAGTGTAGC
GTGAGGTTGGTTTGTGGTCGTCATTGTGGTGTGCAGGCATCCGAGTTAAA
GTGCATGTATGTGGGAGTGAGAGTTATATCGTGATCGTGTGGGCTCGGGG
TTTTGAATCCACCGGCGATGTGTTTGTTTCTGTGTTGTGTGTGTGCATGT
GTGGTGTCCGTTTTGTGTTGTGAGCAGGTGGGTGGTAGAACAAACAATGC
TGTTCATGTCGAAATGAATGTTTGTCGCCAACTCGATGTCCCCGTTGGAT
GCAATTGGTCGTCCTTTTTTCTCCGGCACATCCCTTCTAGTTGTTCCCAC
CTTCTCATTGGGATTGGCCGGGAGAGGTAGGGGGTGGGTTGTAGGGGTAA
GGGGGGTAAGGGCGTGGGGGAGATGGGGAGGAGTGTAAGAAGGTAACGGG
AGTAAGGGAGGTACGGGGGAAGGGGAAAAACGGGGTAAGGAGGGTGAGGG
GGGTACCAGGGTTATGGGGGGTAAGGAGGGTAAGGGAAACATTAGTGATG
TTGAAGCCCGATGTAGGGTAACACTACCTCAGCCCTATATATATAGCTGC
AGATGGCGCTTCAACATCCTTTGGAAACCACACGCGAACATACGAAGAGC
TCCCACCTTTAAACTGCTGCGGGTACGTGGAGACAATGCTTAGGGCAGAG
CATACCACGTCTTGCATGATGAGTATGGTTCCTTCTATTTTTTAGCGGGA
TGCCGTCCCTTCTCACAGCCAGCGGCGAGTGGGGTTGGCTTGACCGTCGA
AAGAAAGCGCCGACGATGCGCACCCTCGGGCTTGGTGGAGATGCGACGGT
GGTATTTTGTTCCTGCGGGACAATACCGTTCTGTATGATTCTGGTTGAGC
TGAAGTGTCATCTCTTGGTGGTACAGCAGTTGTTAATGTTCGAAAATCGC
GGCGGGGGATTTGTAGGTTATGCCACGATTTCTCTCGCTGCAGTTTTTCT
TCTTGTTTCCAGGATGGTGTATTATTGGTGGGTTGAATTTCGTGTCTGGA
GACTTGTAGCGGGTTGCATTGTGCTATATTTTAATCTACTTGCATTTTGT
GTGCGTTGATTCACTTGATGTACCTATTGTGCGCCGTTTCCTGCGATTAA
GACGGAGCATTGATTGGATTGGATTAATGTTTTGGGAGATGTTGCAGCAG
GGGGCTGTTTAAGATCTTGTGTTCGGGGAGATGATGCAGCAGGAGGGCTA
TTGAAAATTTCTTCCATGTTGTCTCGATGTTGGAGAAACGGCATAGTCGA
GGAACGGCATTTTGCAGGCGCCGGGGTTTGGACTTTGTTTTATTGCCGTA
CGTGGTACGGTAATATTTCCGAGCGATGTATAGGAGGAAGGATTTGGCAT
ATTTTGATTAAGGTATGGTTGAGGCCTATGTGCTTCCGAAGCTTTTTTGA
CAATGGTCAGTAAGTTGAAGGATGGTTCTATGCGACGATTTTGTTCGAAG
CAATAATTGACGCGTTTTCCCGGAGGCATCCGTCTCGAGTCTTTATGACG
CGGCGACTCCGATGTAATTATTGATCTCTGCTGAACATTTTCCTAGGATA
ATTATTTGTATTTGACTGCCTGAGAATCGGTTGCGACGACATTTTCTCGA
AAGGGGTGATTGTTAAGACTCTAGTTAAATTCCATCGTGGATTAAGGAGG
AATCCTAATATGAAACTTGAGTATACAGTAGTATAGATCCGGGAGTTGAA
ATGATCTGTGAATATGAACGATGGAAGGTTTTCAGGGTTTGTTGCCGTTT
CACCTGGCGATACGTACGGAGGATTTCTTCGTAGACCGTGTCTCGTACCG
AGTAGGGGGGGTGTTGTGTGTACTCGACAGAGTACGCATCCCCGAGATCT
TCGGGGGGTACGCAGATGTGATATAATAAAGTAACTTGAGCC back to topCoding sequence (CDS) from alignment at Scaffold_372:445469..451360- >EsuBft1363_3a-0001 ID=EsuBft1363_3a-0001|Name=EsuBft1363_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=360bp|location=Sequence derived from alignment at Scaffold_372:445469..451360- (Ectocarpus subulatus male Bft15b) ATGAACGAGCTCATCATGGTCGCCTTCGGCGTTGCCGTTATCCAGCAGCT ATTGTCTTCGCTCACAACGGACACACCGGGAGCCGTTTCCGCGGAAGATG CGGCCGACTTTGCCGAAAGCTTTGCAAGGAGCTGCTTGTTGCCCCAGCCC CCCGACCAAAGCGAGGCCCTCGTACCGTGGCCCGCTGTCTCCGCGGGTGC TGCAAGAGCGGCATGCCTCGTAGGGTTGAGTTGCGTTGCGGGAGGCATGT TGGACAAGGGCACCTTGTTTCTGTTCGAGGTGGGGTTGAAGACCTTCATC AACTTAATTATAATCCGAAGCCTGCGTTTCCTCGCATCGATGTTTCAAGG ACCATTGTAA back to top
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