EsuBft1363_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1363_2a-0001
Unique NameEsuBft1363_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_372contigScaffold_372:455374..459341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1363_2
Protein domainsTRANSMEMBRANE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length161
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-13_003740.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_2aEsuBft1363_2aEctocarpus subulatus male Bft15bgeneScaffold_372 455374..459341 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_2a-0001EsuBft1363_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_372 456469..459319 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_2a-0001-exonagat-exon-2047Ectocarpus subulatus male Bft15bexonScaffold_372 455374..456573 -
EsuBft1363_2a-0001-exonagat-exon-2048Ectocarpus subulatus male Bft15bexonScaffold_372 457456..457623 -
EsuBft1363_2a-0001-exonEsuBft1363_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_372 458374..458425 -
EsuBft1363_2a-0001-exonagat-exon-2046Ectocarpus subulatus male Bft15bexonScaffold_372 459150..459341 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_2a-0001-exonagat-three_prime_utr-3290Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_372 455374..456468 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_2a-0001-cdsEsuBft1363_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_372 456469..456573 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_2a-0001-exonagat-five_prime_utr-2168Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_372 459320..459341 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1363_2a-0001 ID=EsuBft1363_2a-0001|Name=EsuBft1363_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1612bp|location=Sequence derived from alignment at Scaffold_372:455374..459341- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTCGGAGTCGAGCCAGGGAACGATGTGTGTGCCGGTTATTGTTTCAGAAG
TGTCGATGGTCTGTGACGCGGGGTCGGTTTCCCATCCCACCAGATTGACC
AAAGACGGGTCCTCGCGGGACGGAAAAATACCGCCACCGAAGGAAGGGGT
CCGGGTGATAGCCTTACGCCCAACCACGCCGGCTGGGTCAAGGTGCATAT
GGAACGACCTGCCGCACATTGTCCAGTTCGTGGCCATATTTCTGATGTTG
GTGTTACTGTACGGGGTTAAACGAGTATTCGACAAGGCGGACAAAGCTAT
GTCCACTCGCTTGTCCTGCGCCACAGCGGCGTTTCTGCACGAGAGAAGGC
ACCACCACGCTCCCCTCCCCCGAGTTTTGTTGGCCACGAGCGATAAGGTT
GCGTCTGACGCAGTGCGCTTGCGAACGGGTAAAGAGGTGACGTTCGAAGT
ATTTTGGAAGGAGTCCGAAACAACTTTCTTCGAGCGGCTGAAGTTGAGGG
AGTCAGGCCAGTCCTAGAACTGGTTCAGTGAATCAAAGCTGAGGAGGCAG
AAAACAACTTTCTTCGAGCGGCTGAACTTGAGGGAATCAGGCCAGTCCTA
GAATTGGTTCATTCAGTGAATTGCTGCTGTGGATTCCCTCGCGCATGATA
AAAGAGGAAAACCTCTGATGCCGCTGTGGCGTAATCTGCACTATACCTCC
TGATAACGTAGCAGGAATATTTTCGAGGTTGAAGCTCTTGTTGTGTGCCG
CAAAGAAAGAACACCCGGGTGAGACAACCAACCAACCGGGGTCGTTCGCT
CTTGCAAGCTTCATCGAGTAGGAATCGTTCGCGGTTTCGTGTTGGCGTTC
GTGTCCATGATGTATATATTGTACATCACGTCCGTGTATGCATACATCAC
GTCCCCCTGGGGCTACTCTTAGAGTGGGGGGGGGGGGGGGGGGGGGGGGG
GNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGCGTCGGAGATTGTTGCCCGGAACAACCTCGAATTTGACCGTT
GCGATTCTTGGGGGGGCGTTATGTGTTTCCGGCACGCGGCGGCAAGGATA
CCGGTGGTGGAAGAGTCACTGCTGCTACATCATCATCACGGGGGTATCGA
AGCGATGCGGCCGCAAGAGAAAAAAAGTGCGCTTGGACTAACGTCGTAAA
TATGCGGAGCGGGGGCTATCGTTAACGGTTGTAAGATAAAGTTACACCAT
TAGACTAGTCAGCGCTGACTCAGTAGTCTAATGGTGTAACTTTATCTTAC
AAAAGATATACGCTCAGCTCGTTAGCACCCGGCTGGATCACTTGGGTCTA
GAGCTTTGTTGAGAGAAGGAATCTCCGGGGCCGGACCCCTCGCCGGCCGC
TGCCTGAAAAGAACATGATGGTGCTTGGGAAAGTGTGTAGCCGGGATTCG
GATCCTTGCGTGAAACTTTTGTCGCCAAGTGTGAAACCATTGGTCAAGTC
AGCGCTGACTCAGTAGTATAATGGGGTAAGCCTTTACTTACAAAGGATAC
CCGCACGAGTTCGAATACCGGCTGGATCACTTTTCATTACAAGAAAAACA
AAAGTGCACCTA
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protein sequence of EsuBft1363_2a-0001

>EsuBft1363_2 ID=EsuBft1363_2|Name=EsuBft1363_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=164bp
MCVPVIVSEVSMVCDAGSVSHPTRLTKDGSSRDGKIPPPKEGVRVIALRP
TTPAGSRCIWNDLPHIVQFVAIFLMLVLLYGVKRVFDKADKAMSTRLSCA
TAAFLHERRHHHAPLPRVLLATSDKVASDAVRLRTGKEVTFEVFWKESET
TFFERLKLRESGQS
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mRNA from alignment at Scaffold_372:455374..459341-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1363_2a-0001 ID=EsuBft1363_2a-0001|Name=EsuBft1363_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3968bp|location=Sequence derived from alignment at Scaffold_372:455374..459341- (Ectocarpus subulatus male Bft15b)
GTCGGAGTCGAGCCAGGGAACGATGTGTGTGCCGGTTATTGTTTCAGAAG
TGTCGATGGTCTGTGACGCGGGGTCGGTTTCCCATCCCACCAGATTGACC
AAAGACGGGTCCTCGCGGGACGGAAAAATACCGCCACCGAAGGAAGGGGT
CCGGGTGATAGCCTTACGCCCAACCACGCCGGCTGGGTCAAGGTAAGGAG
GAGGAGATAACACCACTGCTTCTCGGAAAAAATCTTTTTTTTTGGTCGAC
TGCGGGCATACTTCGACTCCTGGTTGGAGAGCTAGAGTATTCTCTTCGGC
ATTTTTTATTTTATACCATCAGCACTTAGTGGACCCCTGGAACAGGCAAA
GGGTGGTGTTCTAACAAGAAACACTGGCTTCGATATCACGACGAGAACGT
CCTACTGTATTTTACTACTGCTATGATCTCCGATACGCTACTGTTACAAT
GGAGTTGTTCCATGGGTCCCTTTCGTTTGACTCGTTGACCCTGTCTTCCG
TCCCCACGCTTGCTCGCTTGTTTGTGTCTTGCCATCAGCAGTTCTCGTGG
CGGTGGTCATGTCGTTCGTCTGCTGGCCTTGGCGTTTGCCTTCGCCATCA
AACTGGGCAACGTGGAAAGCAAAAGTGAGTCTTTTCGCAACCTCAAGCGC
CTTCCTACTGTGTACCACCAGCCGAGCAGAAGAACGTATTTATTTGTTAA
TGCTTTCACAGCCTCTACTACATAGTACAATATGTATTGCCTGGAGAGGA
CAAGCCTATCTATCCTGTGTGGGTCGTTTTCCGTCCCTTTCTGCTGAAAA
TCCTATCCCCTTTGTTGGCGATGCCTGACTGAGAATTTAACAGTTCCCCC
TTTCACCCGTGACTTTGTTGTTGATCCGTGCCGTGCAGTGCTGGTTGAGC
TTCCAGCGGGTTTCAGGTGCATATGGAACGACCTGCCGCACATTGTCCAG
TTCGTGGCCATATTTCTGGTGAGCGCGTTGATTTGAGTGTTCGCTTCAGA
GAATGGCATCGTTTTTTGTTTCTGTCCGAGTGTCACGTTTCCACTGCTGC
TGTAAGTGTGTCTCATCCACCACGTCTTATTTTGCTGCACGCATGCATGC
CGTTTGCTGCCCCGCTGATTCGCCAGTGTTGCGAAAACAAAACGGTAATG
CCGTAGGAAACAAATAGTTCGAAGCTCTTTGGAAGGATCGTGGTTGGTTT
TGTTGTGTTGTCCACGACCGAACCGCAATTTGTTGCCTCCACGGTCTTTT
TGAATCGAACGTAATTGACCATACAAAATACTGAAAAGTAAGTAGGAGTA
TCATTTTTTTCGCCTTTCGGGTTTCTCCACGTCGTCTATTGAACGCAGCC
TCCGTTTGTACCCGCAAAATACCAGACGAACAATTGTCAAAGCTCCAAGA
CTTCTAGCTTTTTCATCATTATTTTGTTGCGCGTCGTTCAGAAGTTCGGC
GAAGGCGAAATCGTGTGCTTCGGATTGGATTTGGGTCAGGGTTTATTTTC
CTCCTCGACCGACCGAGCCGCTGCTCTTGGAATCCTCACCACGCCACTAT
TTACCGAAGCTGCTTCGCTTCCGTCCGGCGGTTGGTGGTGTGCTCCTGTA
CTTGCTCTTTACCAAACCTTGTTTGATCTGTTCTCGCATCAAGCGGATAG
TGGTGCTCCTGGTCTTGTGCTAGCTATCACCCCAACCTTCTCCGCTCTCT
CCCCGCATCATCACACAGATGTTGGTGTTACTGTACGGGGTTAAACGAGT
ATTCGACAAGGCGGACAAAGCTATGTCCACTCGCTTGTCCTGCGCCACAG
CGGCGTTTCTGCACGAGAGAAGGCACCACCACGCTCCCCTCCCCCGAGTT
TTGTTGGCCACGAGCGATAAGGTTGCGTCTGACGCAGTACGCGAGGCGGC
GTTTCTGCATGAGAGAGGGCACCACACTCAGCGTTTCGGCACAGAGAAGG
CACCCCCGCCCTCCCTCCCCGAGTTGTCTAGACCGCCACGAGAAACATAG
TACGCATGGTGCAACAGAGGAGAGACCCCACGTGTGTTCAGCCTTGGAAA
AGTCAACCAGCACCACCTCATGGCTTCTCCACAGAATGAAAGTTTCAGTT
GAGGAATCTGGAATTCCCCAGTAGTGTCATTGCTGAGCGGCCTTCCTTGT
GGCCATGATTATCGTCGTGGAGTGAGCGTCGTCGTTTGTGGTGGTCGTTC
TCCGGAAAAAAATAACAAACAGGGTAAATTTGGGTGGGTTGTTGGCATCC
ATCCACGGAAAGAGAATGGATGGCGTCGCGTATGGAAAACTGTTTCTCGC
CACTGTCTGTAGAAGCATCGAGATGCAACAAGCTTCTTCGCACAGGACGG
GCGTGGCGTCAGGATATGACGCGCGGGCGCGCACTCGATTTGTGTTGGTC
ATGAGTGTTCATCGTAAGGGGTGAAGTGCCGTCGCGTAATGTGAGTTCAA
GCTGGTTCGTCGGAGTCGAATTCGTCGCGAGAGGAACGTGCGTATATGGG
GGAGAGAGCATCTCGTGCACTCGAGTCGTGCTGTTGATTTTATGGGGATC
CATTGTACGAGGTGAACATTTTTTTTTTTTTTCCTCTTGAAGGTGGTTTC
GGAGTTGAATTTGTCGAGAATGGAACGTCGACATATTGGAGTTTATTGTA
GATATGCCGATTGTTCACTACAGTTGATGGTTACCAGCTGATTGTTGTTG
CTGGAATATCGTGAGACTCGTGCAGGCGAGGAATGGGGATGCGGCACGAT
GGTTGCATTCGGTAGTAGGTGCGCTTGCGAACGGGTAAAGAGGTGACGTT
CGAAGTATTTTGGAAGGAGTCCGAAACAACTTTCTTCGAGCGGCTGAAGT
TGAGGGAGTCAGGCCAGTCCTAGAACTGGTTCAGTGAATCAAAGCTGAGG
AGGCAGAAAACAACTTTCTTCGAGCGGCTGAACTTGAGGGAATCAGGCCA
GTCCTAGAATTGGTTCATTCAGTGAATTGCTGCTGTGGATTCCCTCGCGC
ATGATAAAAGAGGAAAACCTCTGATGCCGCTGTGGCGTAATCTGCACTAT
ACCTCCTGATAACGTAGCAGGAATATTTTCGAGGTTGAAGCTCTTGTTGT
GTGCCGCAAAGAAAGAACACCCGGGTGAGACAACCAACCAACCGGGGTCG
TTCGCTCTTGCAAGCTTCATCGAGTAGGAATCGTTCGCGGTTTCGTGTTG
GCGTTCGTGTCCATGATGTATATATTGTACATCACGTCCGTGTATGCATA
CATCACGTCCCCCTGGGGCTACTCTTAGAGTGGGGGGGGGGGGGGGGGGG
GGGGGGGNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGCGTCGGAGATTGTTGCCCGGAACAACCTCGAATTTG
ACCGTTGCGATTCTTGGGGGGGCGTTATGTGTTTCCGGCACGCGGCGGCA
AGGATACCGGTGGTGGAAGAGTCACTGCTGCTACATCATCATCACGGGGG
TATCGAAGCGATGCGGCCGCAAGAGAAAAAAAGTGCGCTTGGACTAACGT
CGTAAATATGCGGAGCGGGGGCTATCGTTAACGGTTGTAAGATAAAGTTA
CACCATTAGACTAGTCAGCGCTGACTCAGTAGTCTAATGGTGTAACTTTA
TCTTACAAAAGATATACGCTCAGCTCGTTAGCACCCGGCTGGATCACTTG
GGTCTAGAGCTTTGTTGAGAGAAGGAATCTCCGGGGCCGGACCCCTCGCC
GGCCGCTGCCTGAAAAGAACATGATGGTGCTTGGGAAAGTGTGTAGCCGG
GATTCGGATCCTTGCGTGAAACTTTTGTCGCCAAGTGTGAAACCATTGGT
CAAGTCAGCGCTGACTCAGTAGTATAATGGGGTAAGCCTTTACTTACAAA
GGATACCCGCACGAGTTCGAATACCGGCTGGATCACTTTTCATTACAAGA
AAAACAAAAGTGCACCTA
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Coding sequence (CDS) from alignment at Scaffold_372:455374..459341-

>EsuBft1363_2a-0001 ID=EsuBft1363_2a-0001|Name=EsuBft1363_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=495bp|location=Sequence derived from alignment at Scaffold_372:455374..459341- (Ectocarpus subulatus male Bft15b)
ATGTGTGTGCCGGTTATTGTTTCAGAAGTGTCGATGGTCTGTGACGCGGG
GTCGGTTTCCCATCCCACCAGATTGACCAAAGACGGGTCCTCGCGGGACG
GAAAAATACCGCCACCGAAGGAAGGGGTCCGGGTGATAGCCTTACGCCCA
ACCACGCCGGCTGGGTCAAGGTGCATATGGAACGACCTGCCGCACATTGT
CCAGTTCGTGGCCATATTTCTGATGTTGGTGTTACTGTACGGGGTTAAAC
GAGTATTCGACAAGGCGGACAAAGCTATGTCCACTCGCTTGTCCTGCGCC
ACAGCGGCGTTTCTGCACGAGAGAAGGCACCACCACGCTCCCCTCCCCCG
AGTTTTGTTGGCCACGAGCGATAAGGTTGCGTCTGACGCAGTGCGCTTGC
GAACGGGTAAAGAGGTGACGTTCGAAGTATTTTGGAAGGAGTCCGAAACA
ACTTTCTTCGAGCGGCTGAAGTTGAGGGAGTCAGGCCAGTCCTAG
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