EsuBft1363_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1363_13a-0001
Unique NameEsuBft1363_13a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_372contigScaffold_372:364271..365151 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1363_13
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length88
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_13aEsuBft1363_13aEctocarpus subulatus male Bft15bgeneScaffold_372 364271..365151 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_13a-0001-exonEsuBft1363_13a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_372 364271..365151 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_13a-0001-exonagat-three_prime_utr-3289Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_372 364271..364992 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_13a-0001-cdsEsuBft1363_13a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_372 364993..365151 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_13a-0001EsuBft1363_13Ectocarpus subulatus male Bft15bpolypeptideScaffold_372 364993..365151 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1363_13a-0001 ID=EsuBft1363_13a-0001|Name=EsuBft1363_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=881bp|location=Sequence derived from alignment at Scaffold_372:364271..365151- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGCAATTCCTCCCTTGTACTGGCGGCAGAAGCTGCCGCTGATGAT
GCGACGCAAAACCCCTCCAACTGCAATCGGCCGTTTTTTCTCTCCCAGCG
CTGAAAGGTTGGCACTGGTGTGGAGGTTCCAAAAGAAATCCGGAAGCTCG
TCTCCGTAGTATAATAGAACACTATGAAGCTGAAGTCCGCTAAGGTTTCA
GTAAAAGAATCACTCATCCCACCAGCTTGGAGATACGAAAAACGAAGACC
ATCAGGCCCCGGAGCACTCTGAGGGTTGGCTTTCTTTACCGTCTGCTTGA
TGAACTTGATTTCGAATGGTTCATCAGCTTCGGCGACGGAGTCGATCTTG
TGCGTTTTTATACGATCTCTCGCAGCTTTGATGCTGGAATCCCACGCAGT
AGCAATATCGTCAGGATCTTCGTTAGGGTGTAGGTTGCGAAGATGCTCCA
GCGTGTCGTTGTTGCGCGGTGAAGGTGCTGGGGAGATTAAGGCACTGGCA
GCTTTAGTGATGCCTCCGCTTTCGTGCGCAAGTCTTGTGGCTCTTCTTTG
GCGATTGTCTTCAGTATCCGCATAATACTGAAGTCGACGATTCTTCTCGT
ACATCATGAGCCAGGCGATAGGTTCACTCAGATCACCATTTGCAAAGCGG
TTAAATCGGGATACCCTGTTCATCCTTCCATCAGTCGATCCATGCAATGC
TGGGGTAAGATGAAGCAACTTTGTTGCTCGGACAAGTTGGAGTTGTCTTT
CAACACGTGCTACTTCATATCTTTCCGCTGCAAGAGGAGACAGATCTGAG
ATATCTGACTTCTGCTGATCCATGTGTACAGCTCCAAATGCTTGCACGAA
GAGGATGACGACATGTTGGAAGTGTTTGCAA
back to top

protein sequence of EsuBft1363_13a-0001

>EsuBft1363_13 ID=EsuBft1363_13|Name=EsuBft1363_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=52bp
MFAIPPLYWRQKLPLMMRRKTPPTAIGRFFSPSAERLALVWRFQKKSGSS
SP
back to top

mRNA from alignment at Scaffold_372:364271..365151-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1363_13a-0001 ID=EsuBft1363_13a-0001|Name=EsuBft1363_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=881bp|location=Sequence derived from alignment at Scaffold_372:364271..365151- (Ectocarpus subulatus male Bft15b)
ATGTTCGCAATTCCTCCCTTGTACTGGCGGCAGAAGCTGCCGCTGATGAT
GCGACGCAAAACCCCTCCAACTGCAATCGGCCGTTTTTTCTCTCCCAGCG
CTGAAAGGTTGGCACTGGTGTGGAGGTTCCAAAAGAAATCCGGAAGCTCG
TCTCCGTAGTATAATAGAACACTATGAAGCTGAAGTCCGCTAAGGTTTCA
GTAAAAGAATCACTCATCCCACCAGCTTGGAGATACGAAAAACGAAGACC
ATCAGGCCCCGGAGCACTCTGAGGGTTGGCTTTCTTTACCGTCTGCTTGA
TGAACTTGATTTCGAATGGTTCATCAGCTTCGGCGACGGAGTCGATCTTG
TGCGTTTTTATACGATCTCTCGCAGCTTTGATGCTGGAATCCCACGCAGT
AGCAATATCGTCAGGATCTTCGTTAGGGTGTAGGTTGCGAAGATGCTCCA
GCGTGTCGTTGTTGCGCGGTGAAGGTGCTGGGGAGATTAAGGCACTGGCA
GCTTTAGTGATGCCTCCGCTTTCGTGCGCAAGTCTTGTGGCTCTTCTTTG
GCGATTGTCTTCAGTATCCGCATAATACTGAAGTCGACGATTCTTCTCGT
ACATCATGAGCCAGGCGATAGGTTCACTCAGATCACCATTTGCAAAGCGG
TTAAATCGGGATACCCTGTTCATCCTTCCATCAGTCGATCCATGCAATGC
TGGGGTAAGATGAAGCAACTTTGTTGCTCGGACAAGTTGGAGTTGTCTTT
CAACACGTGCTACTTCATATCTTTCCGCTGCAAGAGGAGACAGATCTGAG
ATATCTGACTTCTGCTGATCCATGTGTACAGCTCCAAATGCTTGCACGAA
GAGGATGACGACATGTTGGAAGTGTTTGCAA
back to top

Coding sequence (CDS) from alignment at Scaffold_372:364271..365151-

>EsuBft1363_13a-0001 ID=EsuBft1363_13a-0001|Name=EsuBft1363_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=159bp|location=Sequence derived from alignment at Scaffold_372:364271..365151- (Ectocarpus subulatus male Bft15b)
ATGTTCGCAATTCCTCCCTTGTACTGGCGGCAGAAGCTGCCGCTGATGAT
GCGACGCAAAACCCCTCCAACTGCAATCGGCCGTTTTTTCTCTCCCAGCG
CTGAAAGGTTGGCACTGGTGTGGAGGTTCCAAAAGAAATCCGGAAGCTCG
TCTCCGTAG
back to top