EsuBft1363_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1363_12a-0001
Unique NameEsuBft1363_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_372contigScaffold_372:382528..384187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog946362.XP_004995947.1
ProteomeIdEsuBft1363_12
Protein domainsIPR013103
Protein domainsPTHR11439
Protein domainsIPR012337
Ownerapollo_admin@sb-roscoff.fr
Notecopia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon3
Max annot lvl33154|Opisthokonta
Length1170
Hectar predicted targeting categoryother localisation
Evalue4.22e-37
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta
Date last modified2016-06-14
Date creation2016-06-14
DescriptionEncoded by
COG categoryJ
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
GO0003824
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_12aEsuBft1363_12aEctocarpus subulatus male Bft15bgeneScaffold_372 382528..384187 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_12a-0001-exonagat-exon-2067Ectocarpus subulatus male Bft15bexonScaffold_372 382528..383079 -
EsuBft1363_12a-0001-exonEsuBft1363_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_372 383461..383641 -
EsuBft1363_12a-0001-exonagat-exon-2066Ectocarpus subulatus male Bft15bexonScaffold_372 383751..384187 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_12a-0001-cdsEsuBft1363_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_372 382528..383079 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_12a-0001-exonagat-five_prime_utr-2167Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_372 384167..384187 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_12a-0001EsuBft1363_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_372 382528..384166 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1363_12a-0001 ID=EsuBft1363_12a-0001|Name=EsuBft1363_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1170bp|location=Sequence derived from alignment at Scaffold_372:382528..384187- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GAGGAGATGTAGAGGCGCGAGATGCAGGAGGTGTTGGGCCCGGAACAGCA
GGCGTTCGGGGCCGAGGTCGACGCCAGCGGGTCTTCGCAACCACTCCCAG
ACCCACAGCTAAGTATAACCTCGCCAATCGGGCAGAAGTCGAGTGATGTG
GAAGCAGTACCGATGACGTACAAGGATGTGATATGTTCCAAGTACAAGGT
TTTCTGGGAGGCGGCCATGGAGGAAGAGATAGATGGCCACGACAAGACTG
GAACCTTTACCAAGGTCAAGGAGCTGCCCGAGGGGCGGAAGGCCATAGGT
TCAAAGTGGGTGTTCTCTTGGAAGACGAATGAGAAGGGCCTGATAGTCGA
CTTCAAGGCCCGTATGGTTGCGCGGGGTTTCTCTCAAATCCCCGGCATCG
ACTTCCACCACTCATCCTCAGCGTGCCCGTCTGCAGCGTTCCCGGAAGGC
TGTGGTAGCATGTCCGGCAAGGTGGTCAAGGTTGAGCGTGCCCTGTATGG
CCTAAAGCAGAGTGGCCGTGAGTGGGGGTTTGAAGCTGCCTATGCCCTCA
TCGAGAATGGATACGAGCAGTGCAGGGTTGACCCGTGTGTCTTCCGGAAG
GTGGTGGATGGAGAGGTCATCGCGCTTGTGCGGATCGTGTCCTGCCTGAA
CTTCACGAAGGACTTCGGCATCACCTACGAACGGGGGTCAGGACTAGACT
TAAGCGTGTTTGTCGATGCCAGCTACGCTAACAACGAAGTAGACAGGCGT
TCTACGACCGGGCTAGCTGTGACCGTAGGTGGTACCGTAGTGTGTGCATC
CACCAAGACGCAGCCAGTGACGGCTCAGTCGACCTCGGAAGCAGAGTATA
TGGCAGCCGGGGAGGGCGTGAAGGAGGCGTTGTTTGTGCGTGGCGTTCTG
TCGTTCATAGCGCCCGAGACGAGTGGGGCGAAGATCAAGGTCCTTGAGGA
CAACAAGGGGGCTCTCGCCTTAATCGAGAACCCGTTCAGCTCAGCGAGGA
GCGAGCACATCGACGTGCGGTTCCATTTCATTTGCGAGCTATTCAAGTCG
GGCAAGATCGCTGCAGAGTATGTTCCGACTGGAGAGCAGCACGCCGACAT
GCTGACCAAGGTCTTTGGCAGAGAGAAGTTAAAGTACCACCAGAAGGCTC
TGATGAACCTACCGATGTAG
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protein sequence of EsuBft1363_12a-0001

>EsuBft1363_12 ID=EsuBft1363_12|Name=EsuBft1363_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=382bp
MQEVLGPEQQAFGAEVDASGSSQPLPDPQLSITSPIGQKSSDVEAVPMTY
KDVICSKYKVFWEAAMEEEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSW
KTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAAFPEGCGSMSGK
VVKVERALYGLKQSGREWGFEAAYALIENGYEQCRVDPCVFRKVVDGEVI
ALVRIVSCLNFTKDFGITYERGSGLDLSVFVDASYANNEVDRRSTTGLAV
TVGGTVVCASTKTQPVTAQSTSEAEYMAAGEGVKEALFVRGVLSFIAPET
SGAKIKVLEDNKGALALIENPFSSARSEHIDVRFHFICELFKSGKIAAEY
VPTGEQHADMLTKVFGREKLKYHQKALMNLPM
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mRNA from alignment at Scaffold_372:382528..384187-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1363_12a-0001 ID=EsuBft1363_12a-0001|Name=EsuBft1363_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1660bp|location=Sequence derived from alignment at Scaffold_372:382528..384187- (Ectocarpus subulatus male Bft15b)
GAGGAGATGTAGAGGCGCGAGATGCAGGAGGTGTTGGGCCCGGAACAGCA
GGCGTTCGGGGCCGAGGTCGACGCCAGCGGGTCTTCGCAACCACTCCCAG
ACCCACAGCTAAGTATAACCTCGCCAATCGGGCAGAAGTCGAGTGATGTG
GAAGCAGTACCGATGACGTACAAGGATGTGATATGTTCCAAGTACAAGGT
TTTCTGGGAGGCGGCCATGGAGGAAGAGATAGATGGCCACGACAAGACTG
GAACCTTTACCAAGGTCAAGGAGCTGCCCGAGGGGCGGAAGGCCATAGGT
TCAAAGTGGGTGTTCTCTTGGAAGACGAATGAGAAGGGCCTGATAGTCGA
CTTCAAGGCCCGTATGGTTGCGCGGGGTTTCTCTCAAATCCCCGGCATCG
ACTTCCACCACTCATCCTCAGCGTGCCCGTCTGCAGCGTCTATCAAGACG
TTTTGCCGTAGCCACTGAAAAGGGCAAGAAAATCGCTCACTGGGATGTGA
AGCAAGCGTACATCCACGCCAAGCTAAAAGAAGAAATATACCTCAGGTTC
CCGGAAGGCTGTGGTAGCATGTCCGGCAAGGTGGTCAAGGTTGAGCGTGC
CCTGTATGGCCTAAAGCAGAGTGGCCGTGAGTGGGGGTTTGAAGCTGCCT
ATGCCCTCATCGAGAATGGATACGAGCAGTGCAGGGTTGACCCGTGTGTC
TTCCGGAAGGTGGTGGATGGAGAGGTCGTAGGTCTCATCGTGATCTACGT
TGATGACATCTTAGTGGCGGCAGACGAGGGAGAGCGAGAGGAGTTGTTCG
CTCCGCTCAACAAGAAGTTTCCGGTGAAAGATCTGGGGGAGTGTACCTGG
TACGACGGGTGTGCTATCGCCATGGATGTAGAAAATGGCATCACCAAGCT
GTCCCAGACAGCAAACATTGAGAGTATGCTGAAACGGTTTGATTTGACCA
CGACCGCTTTCACCCTTGCTGCCACCGATGCCGACCTAGGGCCGAAGAGA
GATGACGAGCCCGCGGTGGATAAGCCTGTGAGGGAGGCGATCGGATGCCT
GATGTGGACGAAGCTGACGAGGCCAGACATCGCCCTGCCTCTGAACAAGC
TCCAGAAGATCGCGCTTGTGCGGATCGTGTCCTGCCTGAACTTCACGAAG
GACTTCGGCATCACCTACGAACGGGGGTCAGGACTAGACTTAAGCGTGTT
TGTCGATGCCAGCTACGCTAACAACGAAGTAGACAGGCGTTCTACGACCG
GGCTAGCTGTGACCGTAGGTGGTACCGTAGTGTGTGCATCCACCAAGACG
CAGCCAGTGACGGCTCAGTCGACCTCGGAAGCAGAGTATATGGCAGCCGG
GGAGGGCGTGAAGGAGGCGTTGTTTGTGCGTGGCGTTCTGTCGTTCATAG
CGCCCGAGACGAGTGGGGCGAAGATCAAGGTCCTTGAGGACAACAAGGGG
GCTCTCGCCTTAATCGAGAACCCGTTCAGCTCAGCGAGGAGCGAGCACAT
CGACGTGCGGTTCCATTTCATTTGCGAGCTATTCAAGTCGGGCAAGATCG
CTGCAGAGTATGTTCCGACTGGAGAGCAGCACGCCGACATGCTGACCAAG
GTCTTTGGCAGAGAGAAGTTAAAGTACCACCAGAAGGCTCTGATGAACCT
ACCGATGTAG
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Coding sequence (CDS) from alignment at Scaffold_372:382528..384187-

>EsuBft1363_12a-0001 ID=EsuBft1363_12a-0001|Name=EsuBft1363_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1149bp|location=Sequence derived from alignment at Scaffold_372:382528..384187- (Ectocarpus subulatus male Bft15b)
ATGCAGGAGGTGTTGGGCCCGGAACAGCAGGCGTTCGGGGCCGAGGTCGA
CGCCAGCGGGTCTTCGCAACCACTCCCAGACCCACAGCTAAGTATAACCT
CGCCAATCGGGCAGAAGTCGAGTGATGTGGAAGCAGTACCGATGACGTAC
AAGGATGTGATATGTTCCAAGTACAAGGTTTTCTGGGAGGCGGCCATGGA
GGAAGAGATAGATGGCCACGACAAGACTGGAACCTTTACCAAGGTCAAGG
AGCTGCCCGAGGGGCGGAAGGCCATAGGTTCAAAGTGGGTGTTCTCTTGG
AAGACGAATGAGAAGGGCCTGATAGTCGACTTCAAGGCCCGTATGGTTGC
GCGGGGTTTCTCTCAAATCCCCGGCATCGACTTCCACCACTCATCCTCAG
CGTGCCCGTCTGCAGCGTTCCCGGAAGGCTGTGGTAGCATGTCCGGCAAG
GTGGTCAAGGTTGAGCGTGCCCTGTATGGCCTAAAGCAGAGTGGCCGTGA
GTGGGGGTTTGAAGCTGCCTATGCCCTCATCGAGAATGGATACGAGCAGT
GCAGGGTTGACCCGTGTGTCTTCCGGAAGGTGGTGGATGGAGAGGTCATC
GCGCTTGTGCGGATCGTGTCCTGCCTGAACTTCACGAAGGACTTCGGCAT
CACCTACGAACGGGGGTCAGGACTAGACTTAAGCGTGTTTGTCGATGCCA
GCTACGCTAACAACGAAGTAGACAGGCGTTCTACGACCGGGCTAGCTGTG
ACCGTAGGTGGTACCGTAGTGTGTGCATCCACCAAGACGCAGCCAGTGAC
GGCTCAGTCGACCTCGGAAGCAGAGTATATGGCAGCCGGGGAGGGCGTGA
AGGAGGCGTTGTTTGTGCGTGGCGTTCTGTCGTTCATAGCGCCCGAGACG
AGTGGGGCGAAGATCAAGGTCCTTGAGGACAACAAGGGGGCTCTCGCCTT
AATCGAGAACCCGTTCAGCTCAGCGAGGAGCGAGCACATCGACGTGCGGT
TCCATTTCATTTGCGAGCTATTCAAGTCGGGCAAGATCGCTGCAGAGTAT
GTTCCGACTGGAGAGCAGCACGCCGACATGCTGACCAAGGTCTTTGGCAG
AGAGAAGTTAAAGTACCACCAGAAGGCTCTGATGAACCTACCGATGTAG
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