EsuBft1363_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1363_11a-0001
Unique Name	EsuBft1363_11a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_372	contig	Scaffold_372:384615..387933 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1363_11
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	236
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1363_11a	EsuBft1363_11a	Ectocarpus subulatus male Bft15b	gene	Scaffold_372 384615..387933 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1363_11a-0001	EsuBft1363_11	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_372 386788..387933 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1363_11a-0001-exon	EsuBft1363_11a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_372 384615..384878 -
EsuBft1363_11a-0001-exon	agat-exon-2065	Ectocarpus subulatus male Bft15b	exon	Scaffold_372 385623..386203 -
EsuBft1363_11a-0001-exon	agat-exon-2064	Ectocarpus subulatus male Bft15b	exon	Scaffold_372 386415..387933 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1363_11a-0001-exon	agat-three_prime_utr-3286	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_372 384615..384878 -
EsuBft1363_11a-0001-exon	agat-three_prime_utr-3287	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_372 385623..386203 -
EsuBft1363_11a-0001-exon	agat-three_prime_utr-3288	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_372 386415..386787 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1363_11a-0001-cds	EsuBft1363_11a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_372 386788..387933 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_372:384615..387933-
coding sequence from alignment at Scaffold_372:384615..387933-

spliced messenger RNA

>EsuBft1363_11a-0001 ID=EsuBft1363_11a-0001|Name=EsuBft1363_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2364bp|location=Sequence derived from alignment at Scaffold_372:384615..387933- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCAGGTAATGTCGCTAGTGGAATATACCATGAAGGCAAGCAAAAA
GCACGAGCCAGCTGGCAACATGGAGGATGCCGCTGATCGCGGCGATGCTC
GGGAGAGCGCCGCCGCGGAGTCCACGAACGCCGAAGGAGGGGCACCGTGG
ACCGGGAGTGCGCAGGACGGGAGGTACCTGCGCGAACCTGTTCGAGAGTC
TGGCCCGTCAGGGCGACACAGCGGCGAAGCAGGGGGCTTTGTCCCCCAAG
AGGTGAGAGTAGCCGCTGCTCACAACCAAGATTATAGTAGTGCCATGGAA
GATGGTAATGCTGCTGTTGGCTTTGGATACGGAGCCACAACTCTAGCGAC
GGGGTACCAAAGTGTGCGGTACACTTCTCCTCCGTTCAGCGGGAAATCGA
AAGATTTCAACGAATGGCTAAATGATTTCCGCATGGCAGCGAATGGCGCA
AACCTGTTGGAACAATTTGAAGAGAGCGAGAGCTTGGAGATCCCCGTCAA
CAGCGGAACGAGCAAGTTTTCGCTGTCACAGCAGTACCGGAGCGAGCAAG
TAGAGCTCGCATTCCACGCGTGGAACTTCCTGTCTCACGCGTTGAAAGAA
AAAGATTGGAAAATCACGAAGAGGGCAGAGACGCCCCAGGGAGCTCTTCG
TGAGCTCAAGACCAAACACGACCCTGAATCATCTGTACAGTCGTCAGACG
ACCTCAAGTCCCTGACGTCGACCAAGATCCATTGGGGTGAAAACCCCCAA
AACGCCCTCAATGAGATGCTCCAAACAGCAAAGCCCTTAACCGAGAAAGG
ACTAACTGTCAACGAAACGTTCGTCCTTCACCTCTTCCTGGATACCCTTT
CGGACGAGTATGCCATGACAAAGCTCAACCTGCGACACGCGAAGGAGTTG
ACGCGGTCCGGTGTGCTAAAGGAAGTAATGATGGAATACAAGGCGATCAA
GGACAGGCTGGACCAGGGGAAAGGAAAAGGGGCGAAGGGCGCAGAGCAAG
TGTACTTTGCCGACGGTGAGGGCCGCAGGGAGCGGTACTCAAGTAGGAGT
CAGGGGCAAGGTCGTGGTCGTGGCGGCGGCCGCGGCAGCAGCAGCAGTCG
TGGCCGCGGCGGCGGCGATCGCGGCGGTCGCTCAGGCGGATCATGAGGAG
TTGAGGAGAGCAAGGGAAGCAGCAGTGGAGGCGCCGATGGCGGCGGTGGC
GAGGACTACAAGCTCCCGGGCCGGTGCTTTAGGTGTGGACATTATGGACA
TCAAGCGATCGGCTGCATTACCAACGAGAAGCACTTCGTGCCGTGGTGTG
CGCGCTGCGAGGGGTGGGGCCACACCAAAGAAAAGTGCGCGACGGAGGAG
GCCGTCCTAGCGCAAGTGGTGGAGCATGAGAGCGACGTGGACTCCGTGGA
AGACCAGGCGTTTTGTGCCGTGGCAGTCCCCCCAGGCGAGTGTGGTACCG
TTGGTGAAGTAGGTCTAGTGGGGGTTGTGGAACAAGGCCAGGCGGTGTAC
GTGGCCGACACAGCGGCCCCGGCCCGTGCGCCATGTTCCGATGTGCAGAC
AACTTGGTGAACAACCGTGAGCGTAGCGGTTGTGTGAAGGGGATCGGAGG
CGACAAGGCCCCCGTTCCTCTTCTAGGATACGGAGATGTGACCTTAGTCC
TACAGACGGAAGATGGTGGAGTACCCGTACCAGTACTGAATGCTGCCCAT
GTACCAGAGGCCCCCTACAACCTCGTCTCGCTGTCTTCGTTGGCGGAGGG
GGGCCACACGTATTCGGGGATGAAGGGGGGCCTCACGCTGACCACGAAAG
CCGGGGGGAGGTGTGGTTCCCCCGGACTGGAAAGTTGCTGACCCAACGAG
GGAACCAAATAAGCCAACGCTACACACCACCTGTGCCGCACTCATTGTTC
CTGGCGATGCGGAAGCAGCCAACCCCACTGACCTCAACGAGTACAACCTC
GCGCACGGCCATGCCCACGAGACATTGCTCAGGATCAGGGCGTAGCAGCA
GGGAGTGCAGCTGACGGATGGACCGCTGCTACCCTGTCTTGGCTGTTCGA
TGTCCAAGGGACAGGTGAAACCCGTCCAGAAGAGCACGAGCGCACACGCA
CTGCGACCTCTCGCAGATGACGAGGAGGGCGGGGAGGGTGAGAGCAGAGC
GGATGCATCACGCCAAGGTTGGGGGGGGGAGAGAGACTAAGAGAGTGAGT
CCGACCTCGACGTGATGGAGGCTCGTGGGCCAGGGCAAGCGACGCCGTTT
GTGCGCGACGAGGCGCCGACGGCACCCGGCAACGAGATTCCGGGGGACGG
AGGCAGCGTTCCCCCGTCGCCCCCTTCGGGAAGGAGCGACTTCGGCGGAG
GCAGTAACAGCCCC

protein sequence of EsuBft1363_11a-0001

>EsuBft1363_11 ID=EsuBft1363_11|Name=EsuBft1363_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=381bp
MSQVMSLVEYTMKASKKHEPAGNMEDAADRGDARESAAAESTNAEGGAPW
TGSAQDGRYLREPVRESGPSGRHSGEAGGFVPQEVRVAAAHNQDYSSAME
DGNAAVGFGYGATTLATGYQSVRYTSPPFSGKSKDFNEWLNDFRMAANGA
NLLEQFEESESLEIPVNSGTSKFSLSQQYRSEQVELAFHAWNFLSHALKE
KDWKITKRAETPQGALRELKTKHDPESSVQSSDDLKSLTSTKIHWGENPQ
NALNEMLQTAKPLTEKGLTVNETFVLHLFLDTLSDEYAMTKLNLRHAKEL
TRSGVLKEVMMEYKAIKDRLDQGKGKGAKGAEQVYFADGEGRRERYSSRS
QGQGRGRGGGRGSSSSRGRGGGDRGGRSGGS

mRNA from alignment at Scaffold_372:384615..387933-

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1363_11a-0001 ID=EsuBft1363_11a-0001|Name=EsuBft1363_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3319bp|location=Sequence derived from alignment at Scaffold_372:384615..387933- (Ectocarpus subulatus male Bft15b)
ATGAGCCAGGTAATGTCGCTAGTGGAATATACCATGAAGGCAAGCAAAAA
GCACGAGCCAGCTGGCAACATGGAGGATGCCGCTGATCGCGGCGATGCTC
GGGAGAGCGCCGCCGCGGAGTCCACGAACGCCGAAGGAGGGGCACCGTGG
ACCGGGAGTGCGCAGGACGGGAGGTACCTGCGCGAACCTGTTCGAGAGTC
TGGCCCGTCAGGGCGACACAGCGGCGAAGCAGGGGGCTTTGTCCCCCAAG
AGGTGAGAGTAGCCGCTGCTCACAACCAAGATTATAGTAGTGCCATGGAA
GATGGTAATGCTGCTGTTGGCTTTGGATACGGAGCCACAACTCTAGCGAC
GGGGTACCAAAGTGTGCGGTACACTTCTCCTCCGTTCAGCGGGAAATCGA
AAGATTTCAACGAATGGCTAAATGATTTCCGCATGGCAGCGAATGGCGCA
AACCTGTTGGAACAATTTGAAGAGAGCGAGAGCTTGGAGATCCCCGTCAA
CAGCGGAACGAGCAAGTTTTCGCTGTCACAGCAGTACCGGAGCGAGCAAG
TAGAGCTCGCATTCCACGCGTGGAACTTCCTGTCTCACGCGTTGAAAGAA
AAAGATTGGAAAATCACGAAGAGGGCAGAGACGCCCCAGGGAGCTCTTCG
TGAGCTCAAGACCAAACACGACCCTGAATCATCTGTACAGTCGTCAGACG
ACCTCAAGTCCCTGACGTCGACCAAGATCCATTGGGGTGAAAACCCCCAA
AACGCCCTCAATGAGATGCTCCAAACAGCAAAGCCCTTAACCGAGAAAGG
ACTAACTGTCAACGAAACGTTCGTCCTTCACCTCTTCCTGGATACCCTTT
CGGACGAGTATGCCATGACAAAGCTCAACCTGCGACACGCGAAGGAGTTG
ACGCGGTCCGGTGTGCTAAAGGAAGTAATGATGGAATACAAGGCGATCAA
GGACAGGCTGGACCAGGGGAAAGGAAAAGGGGCGAAGGGCGCAGAGCAAG
TGTACTTTGCCGACGGTGAGGGCCGCAGGGAGCGGTACTCAAGTAGGAGT
CAGGGGCAAGGTCGTGGTCGTGGCGGCGGCCGCGGCAGCAGCAGCAGTCG
TGGCCGCGGCGGCGGCGATCGCGGCGGTCGCTCAGGCGGATCATGAGGAG
TTGAGGAGAGCAAGGGAAGCAGCAGTGGAGGCGCCGATGGCGGCGGTGGC
GAGGACTACAAGCTCCCGGGCCGGTGCTTTAGGTGTGGACATTATGGACA
TCAAGCGATCGGCTGCATTACCAACGAGAAGCACTTCGTGCCGTGGTGTG
CGCGCTGCGAGGGGTGGGGCCACACCAAAGAAAAGTGCGCGACGGAGGAG
GCCGTCCTAGCGCAAGTGGTGGAGCATGAGAGCGACGTGGACTCCGTGGA
AGACCAGGCGTTTTGTGCCGTGGCAGTCCCCCCAGGCGAGTGTGGTACCG
TTGGTGAAGTAGGTCTAGTGGGGGTTGTGGAACAAGGCCAGGCGGTGTAC
GTGGCCGACACAGCGGCCCGTGCGCCATGTTCCGATGTGCAGACAACTTG
GTGAACAACCGTGAGCGTAGCGGTTGTGNCAAGTGGTGGAGCATGAGAGC
GACGTGGACTCCGTGGAAGACCAGGCGTGTTGTGCCGTGGCCGTCCCCCC
AGGCGAGTGTGGTACCGTTGGTGAAGTAGGTCTAGTGAGGGTTGTGGAAC
AAGGCCAGGCGGTGTACGTGGCCGACACAGCGGCCCGTGCGCCATGTTCC
GATGTGCAGACAACTTGGTGAACAACCGTGAGCGTAGCGGTTGTGTGAAG
GGGATCGGAGGCGACAAGGCCCCCGTTCCTCTTCTAGGATACGGAGATGT
GACCTTAGTCCTACAGACGGAAGATGGTGGAGTACCCGTACCAGTACTGA
ATGCTGCCCATGTACCAGAGGCCCCCTACAACCTCGTCTCGCTGTCTTCG
TTGGCGGAGGGGGGCCACACGTATTCGGGGATGAAGGGGGGCCTCACGCT
GACCACGAAAGCCGGGGGGAGGTGTGGTTCCCCCGGACTGGAAAGTTGCT
GACCCAACGAGGGAACCAAATAAGCCAACGCTACACACCACCTGTGCCGC
ACTCATTGTTCCTGGCGATGCGGAAGCAGCCAACCCCACTGACCTCAACG
AGTACAACCTCGCGCACGGCCATGCCCACGAGACATTGCTCAGGATCAGG
GCGTAGCAGCAGGGAGTGCAGCTGACGGATGGACCGCTGCTACCCTGTCT
TGGCTGTTCGATGTCCAAGGGACAGGTGAAACCCGTCCAGAAGAGCACGA
GCGCACACGCAGTTGAGAAGTTATTTCGCGTGTATCTCGACGTGGGGGGA
AAGATGAAAACCACGAGCATTGGTGGCAACTGGTACACACTGACCATCAG
AGACGATTTCTCCCGTTGGACGCGTGTTTTCTTCTTGAAACACAAGTCTG
ACGCAGCGGTTGGGTGAGAAGTTCCTGGCGAACTACCGAACAAAAGGGGT
TCCGTGTGAGGCTTATATCGCACGTACAGACGGTGGCGGCGAGTTCCAGG
GGCAGTTTGCGGAAGTTTGCCGCAGACACGGCATCAAACAAGAGTTCACC
CCCCCTCACACCGGAAAATACAAGGGTGTAGCGGAGAGAGCGCTAGGGTT
GATCACTGATGCCGCGCTTGCGTCACGCATCCAAGCGGTGCAACTTTTCC
CTGACGCACCGAATCACCCCGGGTTGTGGGCCGAGGCCATTTCGTGTGCA
TGCCATCAGCTGAACTGCACCGCCACTAAATCAAACGAGGGAGACAAATC
CGCCTACGAGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCAA
AGTCGCAACCCAAGGGCGAAAAAGGATAGTACCTTGGTCCTGCCCACAAT
CACCCCCGTGACTGTGTTCGCATGCTAACCGAAGCTGGAACCGTAATCAC
CACCCGCAATTTCACCTGGCGCCACGTGCCCGCTGCATCGCCCGCTCCCC
CTCAGCTGCGACCTCTCGCAGATGACGAGGAGGGCGGGGAGGGTGAGAGC
AGAGCGGATGCATCACGCCAAGGTTGGGGGGGGGAGAGAGACTAAGAGAG
TGAGTCCGACCTCGACGTGATGGAGGCTCGTGGGCCAGGGCAAGCGACGC
CGTTTGTGCGCGACGAGGCGCCGACGGCACCCGGCAACGAGATTCCGGGG
GACGGAGGCAGCGTTCCCCCGTCGCCCCCTTCGGGAAGGAGCGACTTCGG
CGGAGGCAGTAACAGCCCC

Coding sequence (CDS) from alignment at Scaffold_372:384615..387933-

>EsuBft1363_11a-0001 ID=EsuBft1363_11a-0001|Name=EsuBft1363_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1146bp|location=Sequence derived from alignment at Scaffold_372:384615..387933- (Ectocarpus subulatus male Bft15b)
ATGAGCCAGGTAATGTCGCTAGTGGAATATACCATGAAGGCAAGCAAAAA
GCACGAGCCAGCTGGCAACATGGAGGATGCCGCTGATCGCGGCGATGCTC
GGGAGAGCGCCGCCGCGGAGTCCACGAACGCCGAAGGAGGGGCACCGTGG
ACCGGGAGTGCGCAGGACGGGAGGTACCTGCGCGAACCTGTTCGAGAGTC
TGGCCCGTCAGGGCGACACAGCGGCGAAGCAGGGGGCTTTGTCCCCCAAG
AGGTGAGAGTAGCCGCTGCTCACAACCAAGATTATAGTAGTGCCATGGAA
GATGGTAATGCTGCTGTTGGCTTTGGATACGGAGCCACAACTCTAGCGAC
GGGGTACCAAAGTGTGCGGTACACTTCTCCTCCGTTCAGCGGGAAATCGA
AAGATTTCAACGAATGGCTAAATGATTTCCGCATGGCAGCGAATGGCGCA
AACCTGTTGGAACAATTTGAAGAGAGCGAGAGCTTGGAGATCCCCGTCAA
CAGCGGAACGAGCAAGTTTTCGCTGTCACAGCAGTACCGGAGCGAGCAAG
TAGAGCTCGCATTCCACGCGTGGAACTTCCTGTCTCACGCGTTGAAAGAA
AAAGATTGGAAAATCACGAAGAGGGCAGAGACGCCCCAGGGAGCTCTTCG
TGAGCTCAAGACCAAACACGACCCTGAATCATCTGTACAGTCGTCAGACG
ACCTCAAGTCCCTGACGTCGACCAAGATCCATTGGGGTGAAAACCCCCAA
AACGCCCTCAATGAGATGCTCCAAACAGCAAAGCCCTTAACCGAGAAAGG
ACTAACTGTCAACGAAACGTTCGTCCTTCACCTCTTCCTGGATACCCTTT
CGGACGAGTATGCCATGACAAAGCTCAACCTGCGACACGCGAAGGAGTTG
ACGCGGTCCGGTGTGCTAAAGGAAGTAATGATGGAATACAAGGCGATCAA
GGACAGGCTGGACCAGGGGAAAGGAAAAGGGGCGAAGGGCGCAGAGCAAG
TGTACTTTGCCGACGGTGAGGGCCGCAGGGAGCGGTACTCAAGTAGGAGT
CAGGGGCAAGGTCGTGGTCGTGGCGGCGGCCGCGGCAGCAGCAGCAGTCG
TGGCCGCGGCGGCGGCGATCGCGGCGGTCGCTCAGGCGGATCATGA