EsuBft1363_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1363_10a-0001
Unique NameEsuBft1363_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_372contigScaffold_372:388487..394329 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1363_10
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSignalP-TM
Protein domainsTMhelix
Protein domainsSignalP-noTM
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsTRANSMEMBRANE
Protein domainsSIGNAL_PEPTIDE
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Length170
Hectar predicted targeting categorysignal peptide
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_10aEsuBft1363_10aEctocarpus subulatus male Bft15bgeneScaffold_372 388487..394329 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_10a-0001EsuBft1363_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_372 389567..392420 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_10a-0001-exonEsuBft1363_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_372 388487..389689 -
EsuBft1363_10a-0001-exonagat-exon-2062Ectocarpus subulatus male Bft15bexonScaffold_372 390415..390447 -
EsuBft1363_10a-0001-exonagat-exon-2059Ectocarpus subulatus male Bft15bexonScaffold_372 390927..391030 -
EsuBft1363_10a-0001-exonagat-exon-2061Ectocarpus subulatus male Bft15bexonScaffold_372 391849..391967 -
EsuBft1363_10a-0001-exonagat-exon-2060Ectocarpus subulatus male Bft15bexonScaffold_372 392389..392466 -
EsuBft1363_10a-0001-exonagat-exon-2063Ectocarpus subulatus male Bft15bexonScaffold_372 394161..394329 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_10a-0001-exonagat-three_prime_utr-3285Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_372 388487..389566 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_10a-0001-cdsEsuBft1363_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_372 389567..389689 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1363_10a-0001-exonagat-five_prime_utr-2165Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_372 392421..392466 -
EsuBft1363_10a-0001-exonagat-five_prime_utr-2166Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_372 394161..394329 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1363_10a-0001 ID=EsuBft1363_10a-0001|Name=EsuBft1363_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1706bp|location=Sequence derived from alignment at Scaffold_372:388487..394329- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCGCACCGCCTGCAAACACACACAAAACAAAAATGCGCGAGAGCGAGCGC
GTGTGGGGAGCCCAGGGAGTCTCCTGTTGCGAAGACCTCTGCAGCATCAG
GGACGGAGAGCAATAAAAATTATTATTGCTGTTGCGACGACGGGCGGGGT
ACGAGAAGTGGAAGCAAAGGTGTGCTTGTTGCGTGGACACGATAGGAGAT
TCATATGCTGCAGCCATGAACCCTGTGGGTTACGCGCCTCTTCGCGGTCT
TCCCCTAGGGGCCATGTTTTCGCTGGTGGTTGTCTTGGCGGGGTCGGTTG
CTTCTGCCGCCACAGTCGGCAGCATTTCGGCGCGGACTACTAGCGGCAAC
GCCGGTCTCCGCTCAGGCAAGGCATGCGATCCCGGGGACGCTGACTGCTT
CGGAGACGAAAGAGACGACTCCAGCTTCCTCGGCTTCGCATGCATCTGTT
GCATGTTCTTGCTGTTTGTGGTGTTTCGCACCTTGCGGGTTGCTACGATG
TGGGCGAGGGTACCAGAACTATTGTACAAGGCGCGGGAGCTAAAAAGTGC
AAGGGAGAACACCGAATCCTCCGCGGTTGTAGGGGGAGATTGGAGAGGGG
TCAGCAAAAGTGGAGGCTTGACTTGAGCACGCACATGTGTTGCTTGTGAC
CAAGCGGAGGGGGCAGCATACTGCAGTAGCGTGGCGTAGCAGGGGCCAGG
ACCTTGCGATGTTGGAAAGGATCCCGGAAGCGAGAGATAGATCCAGGGGG
AGTGGAAGACGAACAGTCAGAGCTTTGTGTCTCTTGGAAGAAAAACGTTG
TACAACAACGCGCATGGCGTGGCGGGGCTCGGTCTTGTCCAGGGTAACCC
TCCGCAGCACGTTCTTTGGCGGATGAAGGCGGGATGCCCTTCGTTACGAT
TTTCTGCACCAAGACGGGTGCGTTTGTACGTGCGGGTCTTCCTTATTTCA
GTTGGATTGTAGACCTTTATTTGGTGTAATGTAGTTTGGAGGGGTGGAAA
GGAGGGATTTGATCCATCAGGCTGTTATTTGGAGCTTGGACGGTGTCGTC
GATTCCTTTTTTTTTTGTGAGAGATTGCATGTGAAGCTCTTCTTCCAAAT
AATCCGGGGTGCGGAGAGGGGCCCACCTGGTCGAGTGGAGAAACCTGACG
ATGACCGACCCTCAACTTGATAGGGTTGCGAGCGGTGTAGCAAATTGTTT
GTGGTGGTCGTGGTGCTCCTGCAGCGTCAGTAGAGGCCGAGACATAGGAT
CCAAGCTGGAGCGATGGAAGGCTTTCAGCTTCTTTTTTTTGTGGGGCTGC
TTTTCGGGCGCGGCATGTTTGTTCTTCCTTTGCTCCACATACGCAGGCGC
TTAAAGTAAAAAAATGCTATTCTCAAAGTGGTAGAGTACATGTAGCTCTC
GGTAATTTTTGTTCCTTCTGCCCTTTTTTCAGCGTGTGTTCGACCGGGGA
TAGTCGCTTCCCGCTGTTGAAGAGAAATGGAGCAAGACCTGCTGGAGATA
ACCCTTTCTACTTTGGAGGGAACAACGAAAGCGCATCAACAACCAAGACC
ACAGCCAGTGCCAGTGCCCGCCCTCTTGAGAAATGCGAGAGAGTCAGGTT
GGCGTTCTAAAAACTGACAAAAACGCCGAGGTTGAAGGTGCGAGTGCAAT
TCTAGGTCAGGCCCTTTAAACGCACGATTACGCTGAAACTTGTTTTTTGT
AGCCCG
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protein sequence of EsuBft1363_10a-0001

>EsuBft1363_10 ID=EsuBft1363_10|Name=EsuBft1363_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=136bp
MNPVGYAPLRGLPLGAMFSLVVVLAGSVASAATVGSISARTTSGNAGLRS
GKACDPGDADCFGDERDDSSFLGFACICCMFLLFVVFRTLRVATMWARVP
ELLYKARELKSARENTESSAVVGGDWRGVSKSGGLT
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mRNA from alignment at Scaffold_372:388487..394329-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1363_10a-0001 ID=EsuBft1363_10a-0001|Name=EsuBft1363_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5843bp|location=Sequence derived from alignment at Scaffold_372:388487..394329- (Ectocarpus subulatus male Bft15b)
CCGCACCGCCTGCAAACACACACAAAACAAAAATGCGCGAGAGCGAGCGC
GTGTGGGGAGCCCAGGGAGTCTCCTGTTGCGAAGACCTCTGCAGCATCAG
GGACGGAGAGCAATAAAAATTATTATTGCTGTTGCGACGACGGGCGGGGT
ACGAGAAGTGGAAGCAAAGGTATGCAGCCATCATCAGCCGGTCTGGAGAC
GATCATATTTCCCAGGGATTGGTTTCAGCGGTCACGTTGTTTTGATCAAC
GACAGAGAGTCGCTCGGGGCAAAATTGACGAGGAGGGATAGGGGGGCGAC
GAGAAGAAGAGCACTTGTAACCCGTCCCAGCCCGCCTTCTCATTATTTGC
ATCGGTCGTGGCGTAGATAGGCTGGTTTACCGAGGCTGAGTGCTTTTTTG
AAGAGCGAGGGTGTCGTTTCGTCACCCGCTCGTGCTGGCTCTCTCTCTCT
GCCCGGGCCGCAGATGAGGGGGATCGCGCACCAAGCACGGCTTGACCCTG
TCACCTGTGGGTCTTTTTGTCCCGAGCCTTAGTCTAGCTTAGTAAGTCAG
ATTCCCCACACGACGGCAAGAGCGCCGCCTTTCAGGTGTGGGAGGAAAGG
TGGTGCTTGTTTCTCCATTAGGATACATCCCGCCCACAACGGAGACGGAG
ATGTGGGGGGTTGAGGGGGGGCGGGAGCAAGGTGCATTGTTGACGGCGAC
ACACACAGCTCGTCTGCACATATGACAGCGCGACGCAAGAGAGTACATAG
TCTAAGCAAGGGGCCTCTTGTTGTACCAGAAACTGCTAGTGCCCCCAACG
CGAGACAAATAACAGAGTACAACAACATTACATGGACGGGCTATACCGCA
ATATATCGATGTTTTGGGTGTACATGCGCGACGACATCACTTCCCCTCCG
GTCCAGCCTACAAGAGACCGTGTTTATGCATGACGGTACCCTGTGGCTGC
ATTTCCTCTGTTCCAGCCGGGTATCGTTCACCGTGGGTCTTCGGTCTTAG
GAAGCTGCACCCTTGCGTGGTACCTTGGGGTCACTGTGTGGGTGTAAATA
ATAGGCCGAGGATAAAACAGGGTGGGGCGGCGCACGGCCCTTTGTTCCCC
ACATTCGCGTGGAATATGGTGTCATACAACTTTTGGGCACTAGTGGCGCA
ACAACAAAAAAAGTGGTGCAGATGAACCGATTCTAAACTTGATGTGGAGA
CGGAGCAGTCTGGGAAGGGGTTTTGAGGACAGTCGGGAGTGGACTATCAC
CTAGGTTTCCCCCTCTCACGCAACGCCGACATAGTCGAGATCATTTGACA
AGTGGAACCATGAGGCCTGGTAACCGTTCTCTCTCGTAGCGGTGTAGTGC
GAGTAGATGGTCCCGGTAGAGGGCAATCGACCTCCGGTGCACGCTTAATA
AGTATTTGAACCTCAACCTGCAACCACCCGAACGAAGGAAAGTGGGCGTC
ATCGCAGGGCCGACCAACCGCAGGGAAACTGCAAGCACGAAAGAAAGGGA
TGATCAAATTCATGACAATTGCGTCCCAACAACTCAATAACAAAACTAAC
AAAATGGTTCCATGTGACTACACACAAGCAACCATTCCCAATGCACTGCA
TGTTGTCTGTTTTCGCCCGCGGCCTTGGCAACCTTGATGCGGGAGTGTGA
TGAAGTGCCGTCCCCGTGCGCTTTGCGTCAGAAACCCTTGTTCTGTTTTT
CGAACTACTGTAAATAACCGTTAAGTCTGGGGGTGCCCGATGATGAGGCT
TTCGCCCCCACTCTTTTGTCGCTTCGTTCGATTGTCCTTGAAACCGGCCA
TCCATGCTCCCGAACGCCCAAATCGCGGGGCACCGCCGTCTCCCCCACCA
TTGGTTGCCCCAGGTGTGCTTGTTGCGTGGACACGATAGGAGATTCATAT
GCTGCAGCCATGAACCCTGTGGGTTACGCGCCTCTTCGCGGGTAAGAAAG
ACGATTCCATGTCTTCTACGATTATTGAGTGGTAAGCTGATCCCGATCTA
CCACTTTCCATATTCAAAACGAAGCTTGTCTTCGATCATCCCTCGGTAGT
TTCGTGTCGAAACGGTAGGCGCGCAAGTAGTGACATCACATGTATATATC
CCACCAACCACCAGAACACCCGCGTGCAAGCAGTCGCATTTGCATGTGCA
CGTCTCACCACCAGCGGCCGGGGTCATGAGCACGGATCCCGAGCACGCTC
GCGAAGCAAACATACTGCCGCTGTTAATGAACGTTTACCGTCGGTGCGTG
TTTCAGCGTAGTCTCTACGTAAAATATGACATGGGTGCCCTGGCGTATAT
TCATACGTATAGTTCCAACCTGCCCTCCGCCATGCCCCCATTATTGTTCT
GTGTCATGGCAGTCTTCCCCTAGGGGCCATGTTTTCGCTGGTGGTTGTCT
TGGCGGGGTCGGTTGCTTCTGCCGCCACAGTCGGCAGCATTTCGGCGCGG
ACTACTAGCGGCAACGCCGGTCTCCGCTCAGGTAGGCTCCACAACGAGCA
GACGCTCGTTGGATTGTCATCGTATTTTGGCTCGGGGGGGAGCCCTGTCC
CTTGCTGCTGCCTTTGCCCGAGGTGGAAGCCTTTGTTCAGTCGTTGACCA
ACCGGGAGATGAAAGCTCCCGACTATGTAACCGACTAAATAGGTATTCCT
TCATGTCGTGTTCGTCTCGAGGCTTAGCACCTCATCGTGACGAAAGAAAG
TCGCCCACCCACGCTAGATATGTTGTGTTGTTGAGCGTTGTCTATCCCAC
GAGGCATAGCTCTCGCGGCCGTCCGTCCCTTGGTCGACGAACGGGCGTCA
TTTTCCGATATTTCCGACCTCACGTGCAGTGGCATCACAGGTGGAGTTCC
ATCTCCCCTTTCCGAATATGTCGGATGCCCGCGCCCGCTTGTGGAGACCT
TGCCAAGGTCGACCTCCTTGGAAATCACAACCAAGGCCACGAAAGGGGGA
AACGACATGTTTTCGAGGCCTTGGTTGTACTTCCCCAAGGTGTCCGACCT
TGACAAGGTCTCCACAAGGGGGTGCGGGCATCCGACATTTTGGGGAAGGG
GAGTCGACCTTCACCTGTGCAGGCAGGCATTAGTGCCGGCTGGTTGTGAA
CGCTGACACGCAGTACAATTCGGCAAACCGGAAACACAAGCGCTCTGGCC
AGTGTCCGCAACAACACGCCTCGCGTGATACGCCCCTCTCAAAGAGCCGC
GCTCCGATGACCACATGTCAAGTGCTTGAAAAAACCGTTGAGTGAGATGA
TGCTCATGTAGCATGATGAACGCGGGTGTGATGATGATGACGTCACCAGG
CAAGGCATGCGATCCCGGGGACGCTGACTGCTTCGGAGACGAAAGAGACG
ACTCCAGCTTCCTCGGCTTCGCATGCATCTGTTGCATGTTCTTGCTGTTT
GTGGTGAGAAGAAAGAGTGTGGCGTCCTCTGCGACCCAGATTTTTTACAT
GTGGAGCTTGTCCAAGTGTAGTATTGTCGGAAAGTTGTTTTCTGTGTCTT
GTGGCCTTGTTGCCACGTTCACACAGGCAGGGCCCCGTCGCGTCTCTTTG
CTCGCGTGAGGCTTCTGTTCGATTTTTCGAATGGTGTAACGGCCAAATCG
TTCAACACTTGTTTTCGCGCCGGCCCAAGGTACGTAAGTCCAGGGATGTT
CACGGTGCGTTTTTTTTCAGCTGGGAATGTCACGATGCGGTGCGGTTCCT
TCCCATTTCGAGACAACAAAAACGCACGGCACCACACCGTACCGTGACGT
GAGATACAATACAAAAAATGGCACTGCGAACAGTGCGGTTCTATATGGTG
TGGTGAACACCCCTGAAAAATTTAATCTCCCTCCCCCCTTTCCCTCGTGC
CCGGTCTTGCTTCTCGTCGGCTCACGCGACAGGTGTTTCGCACCTTGCGG
GTTGCTACGATGTGGGTGAGAGGAACTGCAATGCTCGTCCGCCTATGGGC
TAGGGAGAGGGGACTTATGGTTCGGCCAGGACGTCTGTTTCACGGGTTGA
TCATTTTGCCAAACTTTCAAGACCATACTTTTTAACTAGGCGGGAGTCCA
ACCGTTCTACAAGTGATCCCCGCATCGAGGCAGACGACACAGGTTTCGAA
CTATAATTTTGTCAGGGAAAAAAAGGCACGCGAATCGTATTTATTTCAAT
TCTTTTTTGGACCAGCCTTGATTGGCAGACTGGGAGACGATGTGGGATTT
TGAAAAAATGTGGAATATCTTACTCAGGATTGATTTTTTGTTTTAATGGG
TAAACCTCGAGTCTCGGAACAATGCATACGAGGGGGAGTCGCGTGCCGCC
CTCCTTCGGAAAATCGTGCTGGTGGTGGTTATCGTAGGAAAACGAGAAAC
AAGAATCCTATCAGATTCGGTTCGTGGGCCATGTCTTTTTCGTCGATGGT
CGTCGAAAATTGTTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGG
GGGGGGGGGGGGTTGGGTACTCATAGTCGTGCATGCCGTAGTCGTTAGAC
CATTGATCTCGGAGGGGGGGGAGGTGGATGGACCAAACGTTTGGGACACG
GCTAATTGCTCGTGGTCTCTTGAACATGCACTCACCACAGGCGAGGGTAC
CAGAACTATTGTACAAGGCGCGGGAGCTAAAAAGTGCAAGGGAGAACACC
GAATCCTCCGCGGTTGTAGGGGGAGATTGGAGAGGGGTCAGCAAAAGTGG
AGGCTTGACTTGAGCACGCACATGTGTTGCTTGTGACCAAGCGGAGGGGG
CAGCATACTGCAGTAGCGTGGCGTAGCAGGGGCCAGGACCTTGCGATGTT
GGAAAGGATCCCGGAAGCGAGAGATAGATCCAGGGGGAGTGGAAGACGAA
CAGTCAGAGCTTTGTGTCTCTTGGAAGAAAAACGTTGTACAACAACGCGC
ATGGCGTGGCGGGGCTCGGTCTTGTCCAGGGTAACCCTCCGCAGCACGTT
CTTTGGCGGATGAAGGCGGGATGCCCTTCGTTACGATTTTCTGCACCAAG
ACGGGTGCGTTTGTACGTGCGGGTCTTCCTTATTTCAGTTGGATTGTAGA
CCTTTATTTGGTGTAATGTAGTTTGGAGGGGTGGAAAGGAGGGATTTGAT
CCATCAGGCTGTTATTTGGAGCTTGGACGGTGTCGTCGATTCCTTTTTTT
TTTGTGAGAGATTGCATGTGAAGCTCTTCTTCCAAATAATCCGGGGTGCG
GAGAGGGGCCCACCTGGTCGAGTGGAGAAACCTGACGATGACCGACCCTC
AACTTGATAGGGTTGCGAGCGGTGTAGCAAATTGTTTGTGGTGGTCGTGG
TGCTCCTGCAGCGTCAGTAGAGGCCGAGACATAGGATCCAAGCTGGAGCG
ATGGAAGGCTTTCAGCTTCTTTTTTTTGTGGGGCTGCTTTTCGGGCGCGG
CATGTTTGTTCTTCCTTTGCTCCACATACGCAGGCGCTTAAAGTAAAAAA
ATGCTATTCTCAAAGTGGTAGAGTACATGTAGCTCTCGGTAATTTTTGTT
CCTTCTGCCCTTTTTTCAGCGTGTGTTCGACCGGGGATAGTCGCTTCCCG
CTGTTGAAGAGAAATGGAGCAAGACCTGCTGGAGATAACCCTTTCTACTT
TGGAGGGAACAACGAAAGCGCATCAACAACCAAGACCACAGCCAGTGCCA
GTGCCCGCCCTCTTGAGAAATGCGAGAGAGTCAGGTTGGCGTTCTAAAAA
CTGACAAAAACGCCGAGGTTGAAGGTGCGAGTGCAATTCTAGGTCAGGCC
CTTTAAACGCACGATTACGCTGAAACTTGTTTTTTGTAGCCCG
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Coding sequence (CDS) from alignment at Scaffold_372:388487..394329-

>EsuBft1363_10a-0001 ID=EsuBft1363_10a-0001|Name=EsuBft1363_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=411bp|location=Sequence derived from alignment at Scaffold_372:388487..394329- (Ectocarpus subulatus male Bft15b)
ATGAACCCTGTGGGTTACGCGCCTCTTCGCGGTCTTCCCCTAGGGGCCAT
GTTTTCGCTGGTGGTTGTCTTGGCGGGGTCGGTTGCTTCTGCCGCCACAG
TCGGCAGCATTTCGGCGCGGACTACTAGCGGCAACGCCGGTCTCCGCTCA
GGCAAGGCATGCGATCCCGGGGACGCTGACTGCTTCGGAGACGAAAGAGA
CGACTCCAGCTTCCTCGGCTTCGCATGCATCTGTTGCATGTTCTTGCTGT
TTGTGGTGTTTCGCACCTTGCGGGTTGCTACGATGTGGGCGAGGGTACCA
GAACTATTGTACAAGGCGCGGGAGCTAAAAAGTGCAAGGGAGAACACCGA
ATCCTCCGCGGTTGTAGGGGGAGATTGGAGAGGGGTCAGCAAAAGTGGAG
GCTTGACTTGA
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