EsuBft1362_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1362_3a-0001
Unique Name	EsuBft1362_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_562	contig	Scaffold_562:39943..40724 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1362_3
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	78
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1362_3a	EsuBft1362_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_562 39943..40724 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1362_3a-0001-exon	EsuBft1362_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_562 39943..40724 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1362_3a-0001-exon	agat-five_prime_utr-2162	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_562 39943..40193 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1362_3a-0001-cds	EsuBft1362_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_562 40194..40724 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1362_3a-0001	EsuBft1362_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_562 40194..40724 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_562:39943..40724+
coding sequence from alignment at Scaffold_562:39943..40724+

spliced messenger RNA

>EsuBft1362_3a-0001 ID=EsuBft1362_3a-0001|Name=EsuBft1362_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=782bp|location=Sequence derived from alignment at Scaffold_562:39943..40724+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AGCTACCGCACCCAAACACAATATATTGTAAGGCCTGGTGTTGGTAGTGG
GTATTGGCGTCTGAGCGGTGGTAGCTGGGCCATCGGGGCAGCGGACACCA
TTTTCATAGCTGGGATCGCGGCCAAAGGGGGCGAGGACAGCAGTGCATAA
CAGGTGCGGTGGCCATTGCGGGGACCGGGACAGCAGGGTTTAATGCTGGG
ACAGCACTTCGAGGCTGGGACAGCAGGGAGGGTTTAGAGTTTTAGTTTGA
CATGTCTGGAACGGAGGAGGACGTAACTCTGAGCGCGAGGTTGGATGAGG
CGCTACGAGCTATAGAGGAGGCCAAGGCTGAGACGAAGGAGGCCAAAGCT
GAGACGGAGGAGCTTAGGGCAGCACAGCGGCGGTCTGCGGGTGCACCTGC
CGGCAGCAGCTCAGGAGGCGACGGTCTAGTTGCTCCTGGAGGGGCTTCAT
CTGCACCGGTGAGGCCAATGTGGCCAGGCGGGGTGAGTCATGATGGCGGT
ACTGGGGTGCCGGGTTTGCCTCTGGGAGGTACAATTGTCAGAACTCCTGT
GCCTAGAATCCCGCCTAATTGCACCGCCGACACTTTTCTCAGTTGGCGGA
GACGCTTTCTGGCCTACGTGGACAACCACAATCTCCAGCACACAATCTTC
GGCAGTGCTGAGGTTCCCGTTGTCAGTTGTCAGGATGAAGGATACTTGAC
ACGCCAGTATGGTGCACAGCTGGTTGTTGAGCACAAGAGGACATGGAGTT
TTATCTTGGAGGCAGCGGTGGGGGCCCCNNNN

protein sequence of EsuBft1362_3a-0001

>EsuBft1362_3 ID=EsuBft1362_3|Name=EsuBft1362_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=177bp
MSGTEEDVTLSARLDEALRAIEEAKAETKEAKAETEELRAAQRRSAGAPA
GSSSGGDGLVAPGGASSAPVRPMWPGGVSHDGGTGVPGLPLGGTIVRTPV
PRIPPNCTADTFLSWRRRFLAYVDNHNLQHTIFGSAEVPVVSCQDEGYLT
RQYGAQLVVEHKRTWSFILEAAVGAPX

mRNA from alignment at Scaffold_562:39943..40724+

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1362_3a-0001 ID=EsuBft1362_3a-0001|Name=EsuBft1362_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=782bp|location=Sequence derived from alignment at Scaffold_562:39943..40724+ (Ectocarpus subulatus male Bft15b)
AGCTACCGCACCCAAACACAATATATTGTAAGGCCTGGTGTTGGTAGTGG
GTATTGGCGTCTGAGCGGTGGTAGCTGGGCCATCGGGGCAGCGGACACCA
TTTTCATAGCTGGGATCGCGGCCAAAGGGGGCGAGGACAGCAGTGCATAA
CAGGTGCGGTGGCCATTGCGGGGACCGGGACAGCAGGGTTTAATGCTGGG
ACAGCACTTCGAGGCTGGGACAGCAGGGAGGGTTTAGAGTTTTAGTTTGA
CATGTCTGGAACGGAGGAGGACGTAACTCTGAGCGCGAGGTTGGATGAGG
CGCTACGAGCTATAGAGGAGGCCAAGGCTGAGACGAAGGAGGCCAAAGCT
GAGACGGAGGAGCTTAGGGCAGCACAGCGGCGGTCTGCGGGTGCACCTGC
CGGCAGCAGCTCAGGAGGCGACGGTCTAGTTGCTCCTGGAGGGGCTTCAT
CTGCACCGGTGAGGCCAATGTGGCCAGGCGGGGTGAGTCATGATGGCGGT
ACTGGGGTGCCGGGTTTGCCTCTGGGAGGTACAATTGTCAGAACTCCTGT
GCCTAGAATCCCGCCTAATTGCACCGCCGACACTTTTCTCAGTTGGCGGA
GACGCTTTCTGGCCTACGTGGACAACCACAATCTCCAGCACACAATCTTC
GGCAGTGCTGAGGTTCCCGTTGTCAGTTGTCAGGATGAAGGATACTTGAC
ACGCCAGTATGGTGCACAGCTGGTTGTTGAGCACAAGAGGACATGGAGTT
TTATCTTGGAGGCAGCGGTGGGGGCCCCNNNN

Coding sequence (CDS) from alignment at Scaffold_562:39943..40724+

>EsuBft1362_3a-0001 ID=EsuBft1362_3a-0001|Name=EsuBft1362_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=531bp|location=Sequence derived from alignment at Scaffold_562:39943..40724+ (Ectocarpus subulatus male Bft15b)
ATGTCTGGAACGGAGGAGGACGTAACTCTGAGCGCGAGGTTGGATGAGGC
GCTACGAGCTATAGAGGAGGCCAAGGCTGAGACGAAGGAGGCCAAAGCTG
AGACGGAGGAGCTTAGGGCAGCACAGCGGCGGTCTGCGGGTGCACCTGCC
GGCAGCAGCTCAGGAGGCGACGGTCTAGTTGCTCCTGGAGGGGCTTCATC
TGCACCGGTGAGGCCAATGTGGCCAGGCGGGGTGAGTCATGATGGCGGTA
CTGGGGTGCCGGGTTTGCCTCTGGGAGGTACAATTGTCAGAACTCCTGTG
CCTAGAATCCCGCCTAATTGCACCGCCGACACTTTTCTCAGTTGGCGGAG
ACGCTTTCTGGCCTACGTGGACAACCACAATCTCCAGCACACAATCTTCG
GCAGTGCTGAGGTTCCCGTTGTCAGTTGTCAGGATGAAGGATACTTGACA
CGCCAGTATGGTGCACAGCTGGTTGTTGAGCACAAGAGGACATGGAGTTT
TATCTTGGAGGCAGCGGTGGGGGCCCCNNNN