EsuBft1362_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1362_2a-0001
Unique NameEsuBft1362_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_562contigScaffold_562:46228..47856 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FGU3
ProteomeIdEsuBft1362_2
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-noTM
Protein domainsIPR005200
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length60
Hectar predicted targeting categorysignal peptide
Evalue3.04e-109
EggNOG OGsCOG5498@1|root,KOG2254@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K01180
EC3.2.1.6
Descriptionglucan endo-1,4-beta-glucanase activity, C-3 substituted reducing group
COG categoryM
BRITEko00000,ko01000
Cross References
External references for this mRNA
DatabaseAccession
GO0016998
GO0052862
GO0052861
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1362_2aEsuBft1362_2aEctocarpus subulatus male Bft15bgeneScaffold_562 46228..47856 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1362_2a-0001-exonagat-exon-45756Ectocarpus subulatus male Bft15bexonScaffold_562 46228..46434 -
EsuBft1362_2a-0001-exonEsuBft1362_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_562 46982..47158 -
EsuBft1362_2a-0001-exonagat-exon-45757Ectocarpus subulatus male Bft15bexonScaffold_562 47632..47856 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1362_2a-0001-cdsEsuBft1362_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_562 46228..46434 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1362_2a-0001EsuBft1362_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_562 46228..47856 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1362_2a-0001 ID=EsuBft1362_2a-0001|Name=EsuBft1362_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=609bp|location=Sequence derived from alignment at Scaffold_562:46228..47856- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCAGCATCGCCAGTGGCCTCCTGGTGGCCGCCCTCTTGTCGAGGAC
GGCTCAGGCGGGGAACTGGTTGAGAACGTCGCCGCGCGGGAACGCCCTGC
CTGACGGTGAACCGCCGGCATCCTTCGACCGCAGGGAAAACGTAGTGTTC
CCCGCGGGCGTGTCGAGCGAGCGGGACGTTCGCCCTGCCTTGCTGCAAAC
CAACAAGTTCTACTCGAACTTCCTGCTCAATGGCCCCGCCCGCGCGGCGT
GGACTCTACCGTACATCGTGTCCGTGAACGATGACCTCCCGTTCGGGATG
AGCGTGGCATATCCCAAGTTTTTCGAAGGAGAGAGGTCGGAGGATGACCG
CCTCGAGTGGTACGCAACTACCACAACGAAGGATATCGTCCTAAGCGCCG
TGGAGTTGCACACCAACCAAGAGGCGACTTTGACCGACTTTGACGACCAG
GGATTTACCGCATTCGTCAGTTTTTCTTCTGCTTTGGTGGATGGAAGCAT
GAAGACGTGGCTCGTGCGAGGAATGGTAAGACCGACCAACGTTCGCTCAT
TTGCAAGTGTTTCCGTCTTGAGGCTTACCGAATACGTATCGTCCAAGTCG
GATTGTTAA
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protein sequence of EsuBft1362_2a-0001

>EsuBft1362_2 ID=EsuBft1362_2|Name=EsuBft1362_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=202bp
MFSIASGLLVAALLSRTAQAGNWLRTSPRGNALPDGEPPASFDRRENVVF
PAGVSSERDVRPALLQTNKFYSNFLLNGPARAAWTLPYIVSVNDDLPFGM
SVAYPKFFEGERSEDDRLEWYATTTTKDIVLSAVELHTNQEATLTDFDDQ
GFTAFVSFSSALVDGSMKTWLVRGMVRPTNVRSFASVSVLRLTEYVSSKS
DC
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mRNA from alignment at Scaffold_562:46228..47856-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1362_2a-0001 ID=EsuBft1362_2a-0001|Name=EsuBft1362_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1629bp|location=Sequence derived from alignment at Scaffold_562:46228..47856- (Ectocarpus subulatus male Bft15b)
ATGTTCAGCATCGCCAGTGGCCTCCTGGTGGCCGCCCTCTTGTCGAGGAC
GGCTCAGGCGGGGAACTGGTTGAGAACGTCGCCGCGCGGGAACGCCCTGC
CTGACGGTGAACCGCCGGCATCCTTCGACCGCAGGGAAAACGTAGTGTTC
CCCGCGGGCGTGTCGAGCGAGCGGGACGTTCGCCCTGCCTTGCTGCAAAC
CAACAAGTTCTACTCGAACTTCCTGGTAAGACAGACACGAGGAAAGAAGG
GCGCCGGGAACCGCTGGCCGGAGGACAGCCTAGGCGTTGCAAGCTCCGAG
ATGCTCCCCAATTCTTCTTGAACTATTGTGTCTCAAGGCAGCTGAACCCT
GCCTCCTTCATTCGTCGCGGTACATACCCCCTTTGTCCAGGATAGCTCAC
TCGCCTCCTCCTTCTTTTGAGATCTTTTGAACCTCGTTCTCTTTCTTTTC
TCTGCTGCCGAGAACACAGCTCGACAGGTCGGCGAGGGCACAACTGAGGA
TCAGCTGCAGATTGTTACCGCCATCAACAATGCTTGTTCCTGGGCTTGGA
TTTACTCTCGCTCTGTCTGTCGACCTACCTATGATTCGTGCCTTGACCCC
TCCTCTCCATTCATCTACCTCACGCACTAATCAAGCACACATGCACGCCC
CCTCTCGCGACATTGTTGGCTTCTTGAACGGCCGACACGTCGCAACAGCT
CAATGGCCCCGCCCGCGCGGCGTGGACTCTACCGTACATCGTGTCCGTGA
ACGATGACCTCCCGTTCGGGATGAGCGTGGCATATCCCAAGTTTTTCGAA
GGAGAGAGGTCGGAGGATGACCGCCTCGAGTGGTACGCAACTACCACAAC
GAAGGATATCGTCCTAAGCGCCGTGGTATGTATTGTTGGGCTTGGTGTGT
GCGTGGCAAGCAGGGCAGTCTGGGATTATGCGGGCTTGGTAATGACGGGG
CCAACGTGCGTGTAGGGCTCTAACGGCACGTTCGAATATAAGTAGGGCAA
AGATATTTCTTGTGGAGAAGTCGTCTGTCCGTGTGGCAATGTGCGGCAAT
GTGCGTCAAAGGGATCCCGGCGCCAAACACCACTACTTTCTAATGTCATG
CTGCACGCAGGTGTCGTCGAAATTCGCGGTCACAGCAGTACAAAGCGAAT
TTCGCTTTGCTTTTCGTTTGCTTTGGGTTTCACGATGGGAACCGTAAGAA
AAAGTGTATGCCGGCATCACTGACGCACATAAGACAAGAGTTTGTCACCC
AAGTTGACGCCGAAGCCAGTCGCAATCCAGGCGATGAACCTGCAAACCTC
CACTGCGTGGAACAGCATTGACACGAACGACCCCCAGATGTAACTTTCAC
CTGCTGAAACTGAATCCAGAGCATTGTTGGTCTGTGATTTGGGCTTTTTT
CTCTCTCTTTCTGGTGCTGCAGGAGTTGCACACCAACCAAGAGGCGACTT
TGACCGACTTTGACGACCAGGGATTTACCGCATTCGTCAGTTTTTCTTCT
GCTTTGGTGGATGGAAGCATGAAGACGTGGCTCGTGCGAGGAATGGTAAG
ACCGACCAACGTTCGCTCATTTGCAAGTGTTTCCGTCTTGAGGCTTACCG
AATACGTATCGTCCAAGTCGGATTGTTAA
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Coding sequence (CDS) from alignment at Scaffold_562:46228..47856-

>EsuBft1362_2a-0001 ID=EsuBft1362_2a-0001|Name=EsuBft1362_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=609bp|location=Sequence derived from alignment at Scaffold_562:46228..47856- (Ectocarpus subulatus male Bft15b)
ATGTTCAGCATCGCCAGTGGCCTCCTGGTGGCCGCCCTCTTGTCGAGGAC
GGCTCAGGCGGGGAACTGGTTGAGAACGTCGCCGCGCGGGAACGCCCTGC
CTGACGGTGAACCGCCGGCATCCTTCGACCGCAGGGAAAACGTAGTGTTC
CCCGCGGGCGTGTCGAGCGAGCGGGACGTTCGCCCTGCCTTGCTGCAAAC
CAACAAGTTCTACTCGAACTTCCTGCTCAATGGCCCCGCCCGCGCGGCGT
GGACTCTACCGTACATCGTGTCCGTGAACGATGACCTCCCGTTCGGGATG
AGCGTGGCATATCCCAAGTTTTTCGAAGGAGAGAGGTCGGAGGATGACCG
CCTCGAGTGGTACGCAACTACCACAACGAAGGATATCGTCCTAAGCGCCG
TGGAGTTGCACACCAACCAAGAGGCGACTTTGACCGACTTTGACGACCAG
GGATTTACCGCATTCGTCAGTTTTTCTTCTGCTTTGGTGGATGGAAGCAT
GAAGACGTGGCTCGTGCGAGGAATGGTAAGACCGACCAACGTTCGCTCAT
TTGCAAGTGTTTCCGTCTTGAGGCTTACCGAATACGTATCGTCCAAGTCG
GATTGTTAA
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