EsuBft135_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft135_6a-0001
Unique Name	EsuBft135_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_389	contig	Scaffold_389:181707..183343 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft135_6
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	148
Ec32 ortholog description	hypothetical protein
Ec32 ortholog	Ec-28_001045.1
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft135_6a	EsuBft135_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_389 181707..183343 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft135_6a-0001	EsuBft135_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_389 182133..182282 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft135_6a-0001-exon	EsuBft135_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_389 181707..181723 +
EsuBft135_6a-0001-exon	agat-exon-61127	Ectocarpus subulatus male Bft15b	exon	Scaffold_389 181873..183343 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft135_6a-0001-exon	agat-five_prime_utr-2154	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_389 181707..181723 +
EsuBft135_6a-0001-exon	agat-five_prime_utr-2155	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_389 181873..182132 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft135_6a-0001-cds	EsuBft135_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_389 182133..182282 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft135_6a-0001-exon	agat-three_prime_utr-3273	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_389 182283..183343 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_389:181707..183343+
coding sequence from alignment at Scaffold_389:181707..183343+

spliced messenger RNA

>EsuBft135_6a-0001 ID=EsuBft135_6a-0001|Name=EsuBft135_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1488bp|location=Sequence derived from alignment at Scaffold_389:181707..183343+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGGGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTCGAGAGGACGGA
GCATTGTTCCCACAGGACCGATCCCCCATGGCCAATCGTTCCTTTCTACT
TTGCCAAAGGTGGTTAAAAAATGTCTCCCCTAGTCTGTCTATCCCAACGA
TATCCCTTCCCGCCTTTTCAACCCACCTCCTATGCCCCNNNNNNNNNNNN
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protein sequence of EsuBft135_6a-0001

>EsuBft135_6 ID=EsuBft135_6|Name=EsuBft135_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MANRSFLLCQRWLKNVSPSLSIPTISLPAFSTHLLCPXXXXXXXXXXXXX

mRNA from alignment at Scaffold_389:181707..183343+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft135_6a-0001 ID=EsuBft135_6a-0001|Name=EsuBft135_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1637bp|location=Sequence derived from alignment at Scaffold_389:181707..183343+ (Ectocarpus subulatus male Bft15b)
GGGGGGGGGGGGGGGGGGTGTACTCATAGTCGTGCATGCCGTAGTCGTTA
GACCATTGACCTCGCATCCCTACAAGCCGGGACGGAGCACGCCGGGTTCT
CGCCGGACCAGGCGCTCACATCATCAAGCGCAAAGCGCCATGAGAAATTC
GGCAAGTCGCATGAAGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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CATTGTTCCCACAGGACCGATCCCCCATGGCCAATCGTTCCTTTCTACTT
TGCCAAAGGTGGTTAAAAAATGTCTCCCCTAGTCTGTCTATCCCAACGAT
ATCCCTTCCCGCCTTTTCAACCCACCTCCTATGCCCCNNNNNNNNNNNNN
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Coding sequence (CDS) from alignment at Scaffold_389:181707..183343+

>EsuBft135_6a-0001 ID=EsuBft135_6a-0001|Name=EsuBft135_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_389:181707..183343+ (Ectocarpus subulatus male Bft15b)
ATGGCCAATCGTTCCTTTCTACTTTGCCAAAGGTGGTTAAAAAATGTCTC
CCCTAGTCTGTCTATCCCAACGATATCCCTTCCCGCCTTTTCAACCCACC
TCCTATGCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN