EsuBft135_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft135_5a-0001
Unique NameEsuBft135_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_389contigScaffold_389:183391..183891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G873
ProteomeIdEsuBft135_5
Protein domainsPTHR19446
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Noteprobable rna-directed dna polymerase from transposon x-element os:drosophila melanogaster gn:x- [Automatic annotation]
Nb exon1
Max annot lvl2759|Eukaryota
Length501
Hectar predicted targeting categoryother localisation
Evalue2.38e-46
EggNOG OGsCOG0553@1|root,COG2940@1|root,COG5076@1|root,KOG1075@1|root,KOG0383@2759|Eukaryota,KOG0384@2759|Eukaryota,KOG1075@2759|Eukaryota,KOG1081@2759|Eukaryota,KOG1474@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG koko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG ReactionR00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathwayko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG ModuleM00089
EC2.1.1.43,2.3.1.15,3.6.4.12
Descriptionacetylation-dependent protein binding
COG categoryBK
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft135_5aEsuBft135_5aEctocarpus subulatus male Bft15bgeneScaffold_389 183391..183891 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft135_5a-0001-exonEsuBft135_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_389 183391..183891 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft135_5a-0001-cdsEsuBft135_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_389 183391..183888 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft135_5a-0001-exonagat-five_prime_utr-2153Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_389 183889..183891 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft135_5a-0001EsuBft135_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_389 183391..183888 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft135_5a-0001 ID=EsuBft135_5a-0001|Name=EsuBft135_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=501bp|location=Sequence derived from alignment at Scaffold_389:183391..183891- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGGATGATCCAGCTGATGGTACTGCTGTACAACTGGGTGTGGAAAAACGA
GTGTACGCCAAGAAGTAGATGGAGGGAAGGAGTGTTTGTGAACTTGTTGA
AGAAAGGAGACAAGACTGAACCAGGAAACTACAGGGGGGTCACACTGTTG
AACACAGTAGGAAGAGTGTTCTGTAAGCTGCTGAACGATAGGATAGTGGG
AGTATTGGAGAAGGAACATAGCATTAGTGAGGGCCAGGCAGGTTTCCGCA
AGAAGAGGGGGTGCGTAGACCACGTATTCACGGTAGGGAGAGTCATCCAA
GGTACAAAGAGGGCGGGAAAGCCGACGTATTGCTTCTTCCTAGACATGAA
AAAGGCATATGATACCGTATGGAGAATATGGGCTATGGAAACAACTGTCC
AAATACGGGATCAAGGGGAAAATGTGGAAAGTGCTGAAGAAGATGACAGA
GTGTACGAAAAGCGCGGTCATGTTAGACGGAGGACTGATTCTTCGACATA
G
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protein sequence of EsuBft135_5a-0001

>EsuBft135_5 ID=EsuBft135_5|Name=EsuBft135_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=165bp
MIQLMVLLYNWVWKNECTPRSRWREGVFVNLLKKGDKTEPGNYRGVTLLN
TVGRVFCKLLNDRIVGVLEKEHSISEGQAGFRKKRGCVDHVFTVGRVIQG
TKRAGKPTYCFFLDMKKAYDTVWRIWAMETTVQIRDQGENVESAEEDDRV
YEKRGHVRRRTDSST
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mRNA from alignment at Scaffold_389:183391..183891-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft135_5a-0001 ID=EsuBft135_5a-0001|Name=EsuBft135_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=501bp|location=Sequence derived from alignment at Scaffold_389:183391..183891- (Ectocarpus subulatus male Bft15b)
GGGATGATCCAGCTGATGGTACTGCTGTACAACTGGGTGTGGAAAAACGA
GTGTACGCCAAGAAGTAGATGGAGGGAAGGAGTGTTTGTGAACTTGTTGA
AGAAAGGAGACAAGACTGAACCAGGAAACTACAGGGGGGTCACACTGTTG
AACACAGTAGGAAGAGTGTTCTGTAAGCTGCTGAACGATAGGATAGTGGG
AGTATTGGAGAAGGAACATAGCATTAGTGAGGGCCAGGCAGGTTTCCGCA
AGAAGAGGGGGTGCGTAGACCACGTATTCACGGTAGGGAGAGTCATCCAA
GGTACAAAGAGGGCGGGAAAGCCGACGTATTGCTTCTTCCTAGACATGAA
AAAGGCATATGATACCGTATGGAGAATATGGGCTATGGAAACAACTGTCC
AAATACGGGATCAAGGGGAAAATGTGGAAAGTGCTGAAGAAGATGACAGA
GTGTACGAAAAGCGCGGTCATGTTAGACGGAGGACTGATTCTTCGACATA
G
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Coding sequence (CDS) from alignment at Scaffold_389:183391..183891-

>EsuBft135_5a-0001 ID=EsuBft135_5a-0001|Name=EsuBft135_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=498bp|location=Sequence derived from alignment at Scaffold_389:183391..183891- (Ectocarpus subulatus male Bft15b)
ATGATCCAGCTGATGGTACTGCTGTACAACTGGGTGTGGAAAAACGAGTG
TACGCCAAGAAGTAGATGGAGGGAAGGAGTGTTTGTGAACTTGTTGAAGA
AAGGAGACAAGACTGAACCAGGAAACTACAGGGGGGTCACACTGTTGAAC
ACAGTAGGAAGAGTGTTCTGTAAGCTGCTGAACGATAGGATAGTGGGAGT
ATTGGAGAAGGAACATAGCATTAGTGAGGGCCAGGCAGGTTTCCGCAAGA
AGAGGGGGTGCGTAGACCACGTATTCACGGTAGGGAGAGTCATCCAAGGT
ACAAAGAGGGCGGGAAAGCCGACGTATTGCTTCTTCCTAGACATGAAAAA
GGCATATGATACCGTATGGAGAATATGGGCTATGGAAACAACTGTCCAAA
TACGGGATCAAGGGGAAAATGTGGAAAGTGCTGAAGAAGATGACAGAGTG
TACGAAAAGCGCGGTCATGTTAGACGGAGGACTGATTCTTCGACATAG
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