EsuBft135_19a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft135_19a-0001
Unique NameEsuBft135_19a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_389contigScaffold_389:38045..38580 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft135_19
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length49
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft135_19aEsuBft135_19aEctocarpus subulatus male Bft15bgeneScaffold_389 38045..38580 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft135_19a-0001-exonagat-exon-61199Ectocarpus subulatus male Bft15bexonScaffold_389 38045..38065 -
EsuBft135_19a-0001-exonEsuBft135_19a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_389 38109..38580 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft135_19a-0001-cdsEsuBft135_19a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_389 38045..38065 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft135_19a-0001-exonagat-five_prime_utr-2148Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_389 38580..38580 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft135_19a-0001EsuBft135_19Ectocarpus subulatus male Bft15bpolypeptideScaffold_389 38045..38579 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft135_19a-0001 ID=EsuBft135_19a-0001|Name=EsuBft135_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=493bp|location=Sequence derived from alignment at Scaffold_389:38045..38580- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GATGGCGAAGCCGAAGGGCAGGAGACAGCCAACTGGTGGTGCAGTTGGAA
GCCCGTCCAAGTCGGACAAGAGAGTCAAGACTGCAGCAGCGAGGGGTGCG
TCGGCCCAGGACAAACATCAAGCTGAGCTCGAGCAGCAGCGTGCAGCGCT
CGCGGCGGACAGGGCAGAGATGGTGCAGAGGCAGCAAGCGCTCAGAGCGA
AGGAGGCTGTGGTTGACAAGAAGGAGCAAGAAATGGCGCGCGCCGCTGCA
CAGCGGGAAAACCGTGAGCAGCAGGAGGTTGAGCGCGTCCAAGCAGCAGC
TGCTGCCTCGGCGGAGAAGGTTGCTCAGAGCCTGGACTACATCGACACTT
CTGTGCAAGAGGTGAAGCCGAAGAAGGGCGAGGTCTGGGCTCAGCCGCAG
TCAAGGATGATCCTCATGCTACTCTTCAACCTCCGCAAGGAAGGCCGCTC
TGAGAACAAGGCGGTGTTGAAGAGCAGGCCGATGTCATTTTAA
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protein sequence of EsuBft135_19a-0001

>EsuBft135_19 ID=EsuBft135_19|Name=EsuBft135_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=163bp
MAKPKGRRQPTGGAVGSPSKSDKRVKTAAARGASAQDKHQAELEQQRAAL
AADRAEMVQRQQALRAKEAVVDKKEQEMARAAAQRENREQQEVERVQAAA
AASAEKVAQSLDYIDTSVQEVKPKKGEVWAQPQSRMILMLLFNLRKEGRS
ENKAVLKSRPMSF
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mRNA from alignment at Scaffold_389:38045..38580-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft135_19a-0001 ID=EsuBft135_19a-0001|Name=EsuBft135_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=536bp|location=Sequence derived from alignment at Scaffold_389:38045..38580- (Ectocarpus subulatus male Bft15b)
GATGGCGAAGCCGAAGGGCAGGAGACAGCCAACTGGTGGTGCAGTTGGAA
GCCCGTCCAAGTCGGACAAGAGAGTCAAGACTGCAGCAGCGAGGGGTGCG
TCGGCCCAGGACAAACATCAAGCTGAGCTCGAGCAGCAGCGTGCAGCGCT
CGCGGCGGACAGGGCAGAGATGGTGCAGAGGCAGCAAGCGCTCAGAGCGA
AGGAGGCTGTGGTTGACAAGAAGGAGCAAGAAATGGCGCGCGCCGCTGCA
CAGCGGGAAAACCGTGAGCAGCAGGAGGTTGAGCGCGTCCAAGCAGCAGC
TGCTGCCTCGGCGGAGAAGGTTGCTCAGAGCCTGGACTACATCGACACTT
CTGTGCAAGAGGTGAAGCCGAAGAAGGGCGAGGTCTGGGCTCAGCCGCAG
TCAAGGATGATCCTCATGCTACTCTTCAACCTCCGCAAGGAAGGCCGCTC
TGAGAACAAGGCGGTGTTGAAGGTCAGTACACAAGCAGTGAAGGTCGGAT
GGTGCGCCACAGCAGAGCAGGCCGATGTCATTTTAA
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Coding sequence (CDS) from alignment at Scaffold_389:38045..38580-

>EsuBft135_19a-0001 ID=EsuBft135_19a-0001|Name=EsuBft135_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=492bp|location=Sequence derived from alignment at Scaffold_389:38045..38580- (Ectocarpus subulatus male Bft15b)
ATGGCGAAGCCGAAGGGCAGGAGACAGCCAACTGGTGGTGCAGTTGGAAG
CCCGTCCAAGTCGGACAAGAGAGTCAAGACTGCAGCAGCGAGGGGTGCGT
CGGCCCAGGACAAACATCAAGCTGAGCTCGAGCAGCAGCGTGCAGCGCTC
GCGGCGGACAGGGCAGAGATGGTGCAGAGGCAGCAAGCGCTCAGAGCGAA
GGAGGCTGTGGTTGACAAGAAGGAGCAAGAAATGGCGCGCGCCGCTGCAC
AGCGGGAAAACCGTGAGCAGCAGGAGGTTGAGCGCGTCCAAGCAGCAGCT
GCTGCCTCGGCGGAGAAGGTTGCTCAGAGCCTGGACTACATCGACACTTC
TGTGCAAGAGGTGAAGCCGAAGAAGGGCGAGGTCTGGGCTCAGCCGCAGT
CAAGGATGATCCTCATGCTACTCTTCAACCTCCGCAAGGAAGGCCGCTCT
GAGAACAAGGCGGTGTTGAAGAGCAGGCCGATGTCATTTTAA
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