EsuBft135_16a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft135_16a-0001
Unique Name	EsuBft135_16a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_389	contig	Scaffold_389:90291..96883 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft135_16
Protein domains	SignalP-TM
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	174
Hectar predicted targeting category	mitochondrion
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft135_16a	EsuBft135_16a	Ectocarpus subulatus male Bft15b	gene	Scaffold_389 90291..96883 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft135_16a-0001-exon	agat-exon-61178	Ectocarpus subulatus male Bft15b	exon	Scaffold_389 90291..91704 -
EsuBft135_16a-0001-exon	agat-exon-61179	Ectocarpus subulatus male Bft15b	exon	Scaffold_389 92394..92634 -
EsuBft135_16a-0001-exon	EsuBft135_16a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_389 96795..96883 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft135_16a-0001-exon	agat-three_prime_utr-3262	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_389 90291..91611 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft135_16a-0001-cds	EsuBft135_16a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_389 91612..91704 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft135_16a-0001	EsuBft135_16	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_389 91612..96883 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_389:90291..96883-
coding sequence from alignment at Scaffold_389:90291..96883-

spliced messenger RNA

>EsuBft135_16a-0001 ID=EsuBft135_16a-0001|Name=EsuBft135_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1744bp|location=Sequence derived from alignment at Scaffold_389:90291..96883- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACTGCGTGTACCGTATGCAGTGCAGAGCATCGTGATGGCTTCTAT
CAACACTCTCGCGAGAGTAGCTACGATGTCGGTGGGGAGGGCGCCGGGGT
CGTCCCGAGGGATCGCTACTGCCTCCGCGGCGCCGGCACGGCGCTTCCTG
TCAACAACAACAAGCGAGGCCGCCGCCGCTGAGAAGCATACCCCGCCGTC
GCCACAGCCAACGCCCTCACCGGCGGCGGCGAAGACCAGCAGCGGGGGTT
CTTCTTTCCTGCAGCGATTTGCGGCATTTTTGACCGGGGCTGGGGTGGGT
TGCGGGCTCGGTTACTACCACCTGGCAACGGAGATTAAGGGTTCCACGGC
AGCATTGGAGGCGGCAATTGCCAAAAACCACCGCAATCTCAGCGATAGAC
TCGACAAGCTCGAGGGGAAGTAAGAATAGCACCGAGAGCGGCTCCGCGGG
GGAGGCAGACCCGGCGGGNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGT
TGTGGTATGCGTGCACGAGGGGGAGGGATCAATGAGTCGGCTCTTTGGTT
AGCACATGACCAGAGGTAGAAGTTGCGGTTGCATTGGTAGTGATAGCAGC
AGTGGAAGCAGTCAGAACACCCCGGTTCAGGAGCGGGCTCTGCGAGAACC
TTGCTCCTGCCGCAGCCAAGAAAAGCCACATTGCAACGTGCACGCGTGGG
ATGAGCCACGCTGAGAAGCGCCGCATCGTGTGAAGGGGATTATAGGAATG
GGTGGTGGCCGTGGACGAGGAGGCCAAACGAGGAGGGGGAAGGGGGGGGT
TAAGGAGCCGTTGCGCTCTGCCGCAGCTGGCCCTGCCCGACTGCAGTGGA
CGGCCGGCCCGAAGAGGCGCGTCGTCGATGGGGGCCTGACGCGTGTTGGT
GGCGTCGGCACAAGTTCTTGCACAAAACCCACCCCGGGAAAACATTGTGG
GTGCCCTGTTTTTTTTTGTTTGGAGAGAGAGCGGCGGCCAGCAAAAGGCT
TCATTTGCTTGCCCACGTGCTCGACGCGCGCTTAGATAAGGCGGTCGGAG
GCAGCTTGTTTTCCTCGTTTCGTGTGTGTGCGCTGCTGTGTTTTTGTTGT
AGTCTGATAAAACGTTTTTGCTGCATTTTACCGCTTTTGTGGTTAAGGAC
CTCAACGGCACGGCGCTGTCTTTGTCCCTCCCAGCGTTCGGTGATACTCC
TCCCTCGTGGCATGATGGACGAGAGGCGAAGACTGGGTGGTTTTTCTATT
TGCAAAATTGCCATCCTCTCTTGCTACGCGAGCATGCAAAAAACCGGGGT
ATGGCACCAACGCTTTTTTTTTTCTTTTCTTTTTTTCGTGTCCTCCAAGG
CCCTGTCTTTGCGCGCGTTATAGCCCATTTCGTTTCGAAGAAAGAACGTG
CAGTAGAGGTCCCTGTTGAGAGCCGGTGTGTGCACCGAAATTTCAACGGC
ACTATTTCGGGCACCTGCACTATTCAAATTATATAATGAATTGGTATTCC
AGTGTGTGCGAGCCGAAAACGCTATACCGGCACTAAACAGGGACCTCTAC
TGCACCTGCCTTCCTGTGTGCCATCTCATTATGATACCAACGACGGAGAC
GACAGCAACGCTGCCAGGGGCTCGGCTGCAACACACGGCCATCGTGTGGC
AAAGTCGGTACAGGGTGGAACGACTACGGCCGCCGGTGCTGGCGCGATGT
CGAGCCCCAGCGCGACGTGTTGCGTTGTGCTTCTAGAACGTGAA

protein sequence of EsuBft135_16a-0001

>EsuBft135_16 ID=EsuBft135_16|Name=EsuBft135_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=140bp
MALRVPYAVQSIVMASINTLARVATMSVGRAPGSSRGIATASAAPARRFL
STTTSEAAAAEKHTPPSPQPTPSPAAAKTSSGGSSFLQRFAAFLTGAGVG
CGLGYYHLATEIKGSTAALEAAIAKNHRNLSDRLDKLEGK

mRNA from alignment at Scaffold_389:90291..96883-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft135_16a-0001 ID=EsuBft135_16a-0001|Name=EsuBft135_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=6593bp|location=Sequence derived from alignment at Scaffold_389:90291..96883- (Ectocarpus subulatus male Bft15b)
ATGGCACTGCGTGTACCGTATGCAGTGCAGAGCATCGTGATGGCTTCTAT
CAACACTCTCGCGAGAGTAGCTACGATGTCGGTGGGGAGGTGAGGAAAAA
CTTTCCCCCCTCGTGAAATTCGTTTTTTGCCTTCCAATGCGCACGAAGGT
CCGTTGCATTTTCCCCCGCTCTCCAGCAGGATGAAGTGTTTTACAGCAGA
CTTGTACTGCTGCTGCCTGTCGCACAGCTTGTGTGTTCCATAGGTTCCAA
GAGGTCTCACTCAAACTGATATCCCGGAGGGCGTGTGAGTTATTCACGTT
ATATTCATGTATTGAGCAATACTCCGCCGCTTTTGTTTGCTTCGCGATGA
AAGGGTTGCCCAACGTGCAAGGTGTGTGATGGACATGCAGCAGTAGCAGG
TCGTAGTTGCCCTTCTCCGTAGACCGCTGCTGTGCACTCCCTCCCTCGAG
AGCCAGCAGAGAAGGGTGATGCCGGCCAGCTCTCTCCGCGAAAAGGTTGG
TGCAGGTGCTTAGCACATCCGTCGACACCGGAGAGAGAAATCGAAGAGCA
AATTGTTCTCAACCACAGCAGTCCAGTCCGTTTTGATTACAGGTACCACG
TGTCCGTGTTGTGAACGAGGAGAGCGGTCTCGACTGCTGTCAACAGCAGT
ACCATGTAAATAGCTGTAGCACCGGGGTGCAAGCCTGCCGCGAGTTCAGC
TACTCTTGTTGTATCGGAGTGGGTTTACTATGTCGACGGAGGGAGCAAGC
ACGTATACGGATCGCCAACACAAAATAGAAGTGTACCGCTCAAGCATGTC
CGCCGTGGAACTTTCAGCCGACTCAACAACAACGTCGCTTACCCTTGTGC
GACTATCGACACCGCCTGCCGCACACAATAACAAGGTCACCGAAGTACGC
ACTACAAACACGTCGCGGTCATATTTTTGTAACCCATCATGAGATCCTGG
GATTTGACATCACTCAACACTAGGTGAAGATAACACCCACCCACGTGCCG
CTGAGTGATGAATTTTTTCAAGCGTAAGGTAACAGCAGTGTCACCGGCGG
GGTGTGTTTTCCTGCGTGGTATTCGGCGGCTGATAATTGTGTAAGCTATG
GAGTTTTGATCCCCCCGGGGAGGGAATCGTTTTTTTTAAACCAATCCCCC
CCGGGGGGGGATATTGACGTACCGCGGGGGGTTAGTTTGTTGTTTTCCAT
CGCTACCCCGAGGGGAAGCCTCCCCCCGTGGGGTTGTGCAAAATAATGAT
GGTTCACACACCATACACGATGAAGGTTTACGAGCACGCGTTCAAAAATT
CAAAGCCTGGTTTGGTGTGTTGTTGTTTGTGTAATGGCAACAAAGACGAA
GAGAAAAAAGACACCAAGAGTACCATTGCCTGTGCTCATGCACAAGAATT
CGCAGTTTGTCCGCAGAAACAAGCTATTTTTATCCTTCGGTTCTACCTTG
AGTTGTGAGATCCAAAAATGAATACGATTGTTTTTTCCCTTTATGCACAA
GGTTTCGTCAGCATGCTACATGGTACGTTTCAGCTGACGCCAGGGATGAT
AAATGCAAGGAAAAGACAAAATAACGAAAAATTTTCACCCATACAACAAC
AGCGAGGGCCAAGTGACAAACGGTACACCTAAATCTCGCTCGAAGCGTAG
ATCTGCAAGTGAATTTTCCGTCCCATGTCATGCTTTTTGTGCTCCGCGAT
GCAACAAAATCGACTCAGAAAAAAAGGGATATACATCCCTCCCGGGGGGA
ACTCGTGGGAAAAATGGTACCCCGAGGGGAAATTGACGGATTTTCTTTTT
TTGGTCAAACACGATCTACCCCGGGGCTAAATCAACGAACTCATGCTTTT
CCAGGCCGAAAAGGTAATAGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGACAATCTCCACTTA
TCGGTAAACTTCTTCGCCTCGTCAATTTGCAGTTGCAGTCCCTGAGGGGT
GTCCGACATACCGACAAAATCATCCGCAAACAGCATTCCTGACACCGACG
TTTCCGTGTCCCCTACTCATACTCCCTTCCGGACTGCCTCTACNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCG
ACGTTTCCGTGTCCCGTACTTTTTCTCCCTTCCGGACTGCCTCTACGAAA
TCCAACAGATCGTTGATGAACAGCTGGAACAATGTTGGGGACAGCGTGCA
ACCTTGTGGGACCCCCTGCTCAATGTCGAAGAATTTTGACAGTTCTCCGT
CTAGCATGACCGCGCTTTTCGTACACTCTGTCATCTTCTTCAGCACGCTC
CACATTTTCCCCTTGATCCCGTATTTGGACAGTTGTTTCCACAACCCATT
TCTCCACACGGTGTCGTATGCCTTTTTCACGTCCAGGAAGAAGCAGTACG
TCGGCTTTCCCGCCCTCTTTCTACCTTGGATGATTCTCCCTACCGTGAAC
ACGTGGTCTACGCACCCCCTCTTCTTGCGGAAACCTGCCTGGCCCTCACT
AATGCTATGTTCCTTCTCCAATACTCCCACTATCCTATCNTCCACATTTT
CCCCTTGATCCCGTATTTGGACAGTTGTTTCCACGGCCCATTTCTCCATA
CGGTGTCACATGCCTTTTTCATGTCTAGGAAGAAGCAGTATGTCGGCTTT
CCCGCCCTCTTTGTACCTTGGATGATTCTCCCTACCGTGAACACGTGGTC
TACGCACCCCCTCTTCTTGCGGAAACCTGCCTGGCCCTCACTAATGCTAT
GTTCCTTCTCCAATACTCCCACTATCCTATCGTTCAGCAGCTTACAGAAC
ACTTTTCCTACTGTGCTCAACAGTGTGATACCCCTGTAGTTTCCTGGGCC
AGTCTTGTCTCTTTTCTTAAACAAGTTCACAACCACCCCTTCCCTCCATC
TGCTTGGCGTATACTCGTTTTTCCAAACCCAATTGTATAGCAGTACCATC
AGCTGGATCATCCCCTTCCCCCCAAACTTCATGAACTCGTTGACTATCCC
CTCCACTCCTGCTGCTTTGTGGCACCTCAGCTTGTTCACACACGCCTCAA
CCTCGTCCTCATTGAAATCCTTTTCTAGTTCTACGTTCCCATCGTCTGCC
TTCGATGTTTTCTTTCTGGGTCCATGCGTCCACCTCCTTCTTAAAACACT
TGGTCAAAAGCTTCACTCTCCGAGGGCACTCCAAGTCTCTCGTAGTGTCC
TGCTACAACTTCCCTTTTTTCCTTCCCACTGCTGACTAGTCCACCGTTCA
CACCTCGCAAAGTTGCTACCCCTGTATCCCCCCCTTGCGCGGTCTTTTTT
ACCATTCCACCAATCCTTTCCCGCATCTGCTTGACGTTCCCCTCCAGGCC
TCCGTTGGTCTTCTGCACTACTTCGTCCCAAATGCACTTTTTCTCCTTTT
TCACTAGTCCCTTCACCTGTTTTCTTTTGGCCCTGTACTTTTCCCAACTC
TCCTCAGACGCCTCACTCAGGTACTGCTNNTCTACGTTCCCCTATTTCTT
CTTTCAGCTCGTCATCCCACCACTTAACCGATACCCCACATCGTACCACC
TTCTTTTCCACTACTCTCTCTGCCGTTGCGTTCACCATGGACTCCCACCA
ATGGGGGGAGGGGAGGGACACTCGAACTCGTGGGGAAAACTCCATAGTTT
ACGGTAATCGCTGCCGTCGGCCGTTGCTGTCCCATCGTGTTCATTGCAGG
GCGCCGGGGTCGTCCCGAGGGATCGCTACTGCCTCCGCGGCGCCGGCACG
GCGCTTCCTGTCAACAACAACAAGCGAGGCCGCCGCCGCTGAGAAGCATA
CCCCGCCGTCGCCACAGCCAACGCCCTCACCGGCGGCGGCGAAGACCAGC
AGCGGGGGTTCTTCTTTCCTGCAGCGATTTGCGGCATTTTTGACCGGGGC
TGGGGTGGGTTGCGGGCTCGGTTACTACCACCTGGCAACGGTGAGAAGGA
TCCATATATACCGATAGCGCCCGCACGGGTAGCTTCTGACGGACCCAGGT
GCCGTTCGCGCCCGCACTGCGAGTTTCGAGTCTGGGACTTCTTTGTGCCT
GGGGCTATGCCGCGAAATAGCCGCTAGGGGCTCTTAACCGAGTTCACAAA
CGATGCTCAAGTTCATAGATCTTTTTGTGTTTCGGAGGCTCAGTTTTTTT
ACTGCAAAGTGCTCATGCGCCACGCTAAACTGCATGTGTGTACGACCTGT
TGGAAGTATCCCTCGCCGGGATTCGAGCCGCCGCCCTCCCACACTGGTAC
TTCGTGTTGTTCTCCTGTGGTTCCCGACCTGCTCGTTGTAACGTTCGCGA
AAACTAGGCGTGTTGTGTAGTGCTTGTGTTCGGCACCGTCTACAGGTCAG
ATGCCTCTTCCGCTCCGTGCAGCCGTACATGCTTGATCGTTTATGTCACC
CCCCCCTCCCCCCCCCCCCCCCCCCCCCNGCCCGCTGAAGCGGCATGCTT
TATGTGCATTTTCCCTGTTCCCAAGTTCTCTCGTTGCGGCCACGCGGTGT
TCCCTCGCTGAAAAACGTTTCGACGTCCGGTCTCTTTCGTCCAATAATGG
GTGGCACGCACATCGCAACGTCGCGTACGTTTATTTTTCCCTATTCGTTT
TTCTCTCGTTTTTTTGTCTTTGTTTGCAGGAGATTAAGGGTTCCACGGCA
GCATTGGAGGCGGCAATTGCCAAAAACCACCGCAATCTCAGCGATAGACT
CGACAAGCTCGAGGGGAAGTAAGAATAGCACCGAGAGCGGCTCCGCGGGG
GAGGCAGACCCGGCGGGNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGTT
GTGGTATGCGTGCACGAGGGGGAGGGATCAATGAGTCGGCTCTTTGGTTA
GCACATGACCAGAGGTAGAAGTTGCGGTTGCATTGGTAGTGATAGCAGCA
GTGGAAGCAGTCAGAACACCCCGGTTCAGGAGCGGGCTCTGCGAGAACCT
TGCTCCTGCCGCAGCCAAGAAAAGCCACATTGCAACGTGCACGCGTGGGA
TGAGCCACGCTGAGAAGCGCCGCATCGTGTGAAGGGGATTATAGGAATGG
GTGGTGGCCGTGGACGAGGAGGCCAAACGAGGAGGGGGAAGGGGGGGGTT
AAGGAGCCGTTGCGCTCTGCCGCAGCTGGCCCTGCCCGACTGCAGTGGAC
GGCCGGCCCGAAGAGGCGCGTCGTCGATGGGGGCCTGACGCGTGTTGGTG
GCGTCGGCACAAGTTCTTGCACAAAACCCACCCCGGGAAAACATTGTGGG
TGCCCTGTTTTTTTTTGTTTGGAGAGAGAGCGGCGGCCAGCAAAAGGCTT
CATTTGCTTGCCCACGTGCTCGACGCGCGCTTAGATAAGGCGGTCGGAGG
CAGCTTGTTTTCCTCGTTTCGTGTGTGTGCGCTGCTGTGTTTTTGTTGTA
GTCTGATAAAACGTTTTTGCTGCATTTTACCGCTTTTGTGGTTAAGGACC
TCAACGGCACGGCGCTGTCTTTGTCCCTCCCAGCGTTCGGTGATACTCCT
CCCTCGTGGCATGATGGACGAGAGGCGAAGACTGGGTGGTTTTTCTATTT
GCAAAATTGCCATCCTCTCTTGCTACGCGAGCATGCAAAAAACCGGGGTA
TGGCACCAACGCTTTTTTTTTTCTTTTCTTTTTTTCGTGTCCTCCAAGGC
CCTGTCTTTGCGCGCGTTATAGCCCATTTCGTTTCGAAGAAAGAACGTGC
AGTAGAGGTCCCTGTTGAGAGCCGGTGTGTGCACCGAAATTTCAACGGCA
CTATTTCGGGCACCTGCACTATTCAAATTATATAATGAATTGGTATTCCA
GTGTGTGCGAGCCGAAAACGCTATACCGGCACTAAACAGGGACCTCTACT
GCACCTGCCTTCCTGTGTGCCATCTCATTATGATACCAACGACGGAGACG
ACAGCAACGCTGCCAGGGGCTCGGCTGCAACACACGGCCATCGTGTGGCA
AAGTCGGTACAGGGTGGAACGACTACGGCCGCCGGTGCTGGCGCGATGTC
GAGCCCCAGCGCGACGTGTTGCGTTGTGCTTCTAGAACGTGAA

Coding sequence (CDS) from alignment at Scaffold_389:90291..96883-

>EsuBft135_16a-0001 ID=EsuBft135_16a-0001|Name=EsuBft135_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=423bp|location=Sequence derived from alignment at Scaffold_389:90291..96883- (Ectocarpus subulatus male Bft15b)
ATGGCACTGCGTGTACCGTATGCAGTGCAGAGCATCGTGATGGCTTCTAT
CAACACTCTCGCGAGAGTAGCTACGATGTCGGTGGGGAGGGCGCCGGGGT
CGTCCCGAGGGATCGCTACTGCCTCCGCGGCGCCGGCACGGCGCTTCCTG
TCAACAACAACAAGCGAGGCCGCCGCCGCTGAGAAGCATACCCCGCCGTC
GCCACAGCCAACGCCCTCACCGGCGGCGGCGAAGACCAGCAGCGGGGGTT
CTTCTTTCCTGCAGCGATTTGCGGCATTTTTGACCGGGGCTGGGGTGGGT
TGCGGGCTCGGTTACTACCACCTGGCAACGGAGATTAAGGGTTCCACGGC
AGCATTGGAGGCGGCAATTGCCAAAAACCACCGCAATCTCAGCGATAGAC
TCGACAAGCTCGAGGGGAAGTAA