EsuBft135_15a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft135_15a-0001
Unique Name	EsuBft135_15a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_389	contig	Scaffold_389:97380..104662 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FI29
ProteomeId	EsuBft135_15
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Max annot lvl	2759\|Eukaryota
Length	57
Evalue	5.53e-41
EggNOG OGs	COG5164@1\|root,KOG1999@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
KEGG ko	ko:K11292,ko:K15172
Description	regulation of DNA-templated transcription, elongation
COG category	K
BRITE	ko00000,ko03019,ko03021,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft135_15a	EsuBft135_15a	Ectocarpus subulatus male Bft15b	gene	Scaffold_389 97380..104662 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft135_15a-0001-exon	agat-exon-61176	Ectocarpus subulatus male Bft15b	exon	Scaffold_389 97380..97654 +
EsuBft135_15a-0001-exon	agat-exon-61177	Ectocarpus subulatus male Bft15b	exon	Scaffold_389 102761..102856 +
EsuBft135_15a-0001-exon	EsuBft135_15a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_389 104458..104662 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft135_15a-0001-cds	EsuBft135_15a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_389 97380..97654 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft135_15a-0001	EsuBft135_15	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_389 97380..104662 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_389:97380..104662+
coding sequence from alignment at Scaffold_389:97380..104662+

spliced messenger RNA

>EsuBft135_15a-0001 ID=EsuBft135_15a-0001|Name=EsuBft135_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=576bp|location=Sequence derived from alignment at Scaffold_389:97380..104662+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGACGACGACGGGCTGCGCGACAGCGACTCTGAGGATGAACCCCA
AGGGCAAAACGTAGAGGAAGAGGAAGAGGAGGAAGAGGAGGAGGACGAGG
AGGACGAGGAGGAAGAGGACGAGGAGGAGGAGGAGGCCGAGCCTTCGTCC
GAGGAAGATTCTGATGATGGCGGTGGTCGGAGCAGGAGGGCAAGCAGCAG
CAGCAGGGGCAAGAAGCGGGCCAGGGAGGCTCCGCCGGCGGCCAAGAAGA
AGTCGCGGAGGGGGGACATGTCACGGTTTTACGATGAGATGGCGGAGGTA
GACGATGACGCCGAGGAGGACTACGACGACAAGGACCGCGCTAACGCGAA
CGAGCTCACCGCCATGGAGAGAGACATGCACGAGCGGATCGCGCGGCGGC
AGGAGCAGAGCAAGGCCTTCATGGAGCAGCCCCTGGAGGAACAGGCCAAG
CAGACAATGAGAAGGCTCGGCGTGCGTCTTCCGGAGTCCCGCAATGACCT
AGGAGGTCGCATCGACGACGACGACGACGACGATGACGACGACTTCCGGA
TGGGACCGGGCGGCGGGGGGGGNNNN

protein sequence of EsuBft135_15a-0001

>EsuBft135_15 ID=EsuBft135_15|Name=EsuBft135_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=192bp
MSDDDGLRDSDSEDEPQGQNVEEEEEEEEEEDEEDEEEEDEEEEEAEPSS
EEDSDDGGGRSRRASSSSRGKKRAREAPPAAKKKSRRGDMSRFYDEMAEV
DDDAEEDYDDKDRANANELTAMERDMHERIARRQEQSKAFMEQPLEEQAK
QTMRRLGVRLPESRNDLGGRIDDDDDDDDDDFRMGPGGGGGX

mRNA from alignment at Scaffold_389:97380..104662+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft135_15a-0001 ID=EsuBft135_15a-0001|Name=EsuBft135_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=7283bp|location=Sequence derived from alignment at Scaffold_389:97380..104662+ (Ectocarpus subulatus male Bft15b)
ATGTCGGACGACGACGGGCTGCGCGACAGCGACTCTGAGGATGAACCCCA
AGGGCAAAACGTAGAGGAAGAGGAAGAGGAGGAAGAGGAGGAGGACGAGG
AGGACGAGGAGGAAGAGGACGAGGAGGAGGAGGAGGCCGAGCCTTCGTCC
GAGGAAGATTCTGATGATGGCGGTGGTCGGAGCAGGAGGGCAAGCAGCAG
CAGCAGGGGCAAGAAGCGGGCCAGGGAGGCTCCGCCGGCGGCCAAGAAGA
AGTCGCGGAGGGGGGACATGTCACGGTGTGTGTGTGTAATTGCTCGAGCC
CTGCATCTACTACTGCTTGATCATACGTGCAAGAGGCGTCGGAAAATGCC
AGCGCTTTATTGACTGTGAAAACCACTACTTCGAAGTACTTTTTTTAACC
CTGTAGGTCGTGACTACAAATATCTCTCTCACCGCGGTTGCGCCGCGTCC
GGTCCGCGTTCGTCGTTGCACACTGCTGTACAGCAGTGGTACATACCTTA
CGCGTACGACCAACCAAACCCTAGGGCGAGGTCGTGAAACTCTGTTGTGT
GTGCGTGCACGGTTTACATCTTGTGTGTGTTTGCTTCGTACACTGGTGCA
GAGCTACTACAATAAGCTGGTTCCCCCATGTCACCGCACGTCCCTCTCCT
ACGAAGTCTCGAGGCCCCACTTTCGTGGTGCACACTGCAACATACAGATT
CCCTTCCCGCGTCTTCTGTTATTTGTTAGTTGGGCGTTGCAACATTTCGG
TTCCATGCGTGCTTAATGGTGTCAGTGTACAAGCTGGGCCAGCCAAGAAG
CTAACATTCAGTCTTCCAGCCATAAATTTTGAAGGAATCAGAATTGGAAC
GAGCTCGGCACATCTGCTCAATCAGCCAATCACAGCGGATTTGCCCATGC
CTCTCGAAATCGTGTTGAACACATTCTCTCCAAAAAAGATAACCCTCCGC
ATGTTATCTGGGTTTAAGAATGGGGAAAAATAATTATGAAACGCTTTTTT
TGCGGCGGAATTTCATTTTTTTTTGAAATTGTGCACAACGGATGCACACA
GCACCCGCTGGCACCGAGGAGTGCACAGCATGGAGAGCCTAGTAGCAGCA
ATCACACGCAATGGCTGGCAGAGAACCTCTGAACCCGTATGCTATCCAGA
GAGGTCTAAGGGGAAGTGGCGGCTACGGCTCATGTTCACAAGCCGGAAAG
GAGACAGGGCAACGAAGAAGTACGGCCCCTTGTGCAACACAGAGCAGGAA
GCGCTTTGTGGCAGCCTTGCCTTCAGGTACAGCTGGGAGGGCAGCCAACG
TGGTCAGCCCTGCGAGGTCAGCAAGGAGAATCTAGTCCCACCTGTTGCAG
CGGGTACTACGCTTCCAGCAGGCAAGTCGTGAACTGCGCAGTTGTACACT
TGTACAAACACGATGTGGACATGATCATGCAATTTTGATTTTTTTTGTTT
TTTCTGGGGTCGGAGCAACGGCAGCACACGTGACACCGTGCCAGCGACTG
CTGCTGTACCTACTGCACGCGGCCAGTCATGCCGCAGGCTGGACTTACGT
CGAGTATGTTCTTTTAGGGACGTCAAGTAGGTGGCACTCTTATAAAAGAG
ATGGCGGCGTATGTTGATTTGTACACGACCACATTTTTTGGGAGATGTGG
TCGTCAGCCGAGATTTTTGAATTTTCGACGGCATGCTTCGCACGCACAAG
TGTAATCGCCCAACGTGATATCCACGTTCACATNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAGAAACGTCAAC
TTTTGTGCGATTTGTGCAAAACATTTGTCATGCGTTTTTGGAGCGCTTAC
CTTCAGATTACAACCTCTTGCATGTATGTGTGTCACGTCATTACGATCGA
TAAGCACCCACACCTACCTGTCCAACCAAAGGGGTACAGTCAGCATCTGT
GCGCCTCTAGCCATCAGGCCGCTTTCGCGCCCCTTTTCTCGGGCTGTAAG
GCCTTCATTTTCCTACACAATTTCCGCCCCAGCACCCAGGTATCGAGGTC
ATGACGCAATTTGCTATTTCCGAGCCGGTTTTTACGAATTGGAACCTCAA
ATTTGATATGTGATTAGGAGTGGTCTTACAAATGCCCCCGAGTGAGATGC
CGTTTTTTTTTTATGAGCCACAAAAACCCCAATGCTAGGATTCTCAGTTA
TTGAATATAGGGATACCTCGCAAAAAAAAAAAAAAACGGCATCTGACTCG
GGGGCGTTTGTAAGACTGTTTCCAATCACATATCACAATTTCAGGTTCCA
ATTCGTAAAAACCAGCTCGGAAATCGCTTCTAACCATTTGGTTGACTTCT
TGGCTGGCCCAGCTTGTAGCGCTTCATAGAAACAGCAGAGCGGGATTTTT
TAGCTCAAACCATGTCTTCACCATATTACCGTACATGACACAAGATAACA
CACCCCCTTGACCAATTTTCGAAGTTCGATTTCTCAACTGCAGGGACAGT
CATAGCGCCGAAAATGGCGGCGTTGAAACCGTCTCGTCGAGAGCTTTTCG
AAAATGTATCGTTTCGTTTATGCATCCTCTTCGTCGTGGAGTAATCGAGC
TTTGAAAATCGGTCTAGGGGGGTGTGTTATCTTGTGTCATATACGGTACT
GTGGTGCAAGCAGTCGTGGTCCCGGTTTAGCGGTTCCTTCCCTGTTTCGC
GGGTTGCCCCGAATAACGGTTACAAAATCCCGTGGCGCGGCTGCACCTTG
TTAGTCGAACTACTTATACTATATTGCTACCAATCCGATTCAGAGGTGAT
GCCCTCCATGTAGCATTTTGTGCCACGATGTGGACCGTTAAACCGGGACC
ACGACCGTGGCTGCACCAGGAGTAGCCATCCAACACGTTTTGGTTTCGGT
TCGTAAGTAAAAGCCTTTCGTTCTTCTTGTCGTTGTGTCCGATGCTAGGG
GGGGGCGGGGGGCGGGGGGAGACTGACCGATGCAGAGCCTGCACCGACAA
AGCATGCCTACTGCATGTACCAACGAATCGATTTCCCGATAGGAAGAAAA
TGGCACAACAAAAATCCAAAACATTAGCCATACGTCTTGTCTCTCCTCGC
GCCTCCCGTGCCTGCCTCTCCCTAAACCTCATCCTGCTTGCTTGCTTTTG
TCCCAAAATCTTGTATCGTTTGTTGTCGCAGGTTTTACGATGAGATGGCG
GAGGTAGACGATGACGCCGAGGAGGACTACGACGACAAGGACCGCGCTAA
CGCGAACGAGCTCACCGCCATGGAGAGGTGACCATTTCTTACCTCACCCA
GATACAGTTACGCGCCCGCGATTGAAGACACAAACCTTTTGAGAAACTAA
GGCTCAGATGAATATGAAAATTCGACGAAGAAACACACCTACCTCAACCG
TGGATCCTACACTAAACTCTATTTTGTGAGTAGTCTAGGCTGCGAAATTG
GTGTGCGTGTGTGCTCGTGGCGAGCGTGCGTGTGACATATCGTCAAGACT
ATTCCAATAGCATCGTCAATACACCAACGATCGTCGTCAACCATCGAAGG
AACCCTAAGCACGAGGTGGGTCTCGTCTACCAATGTCAGCGACGCTCTCG
AGTGACCTATGCTCGACGGTGTTGACGAAATTTGAAACTGAACCTCGGCC
CCGAAGTTGGCGTTACTTTAACGTTCCCTCGAACTGGTAAGTATTGTTCA
CGTCTCCGTTCAGCATTCTCCCCACACGTGATGCATACAGAGACCAATAC
TATAAATATAAAGAGTTGTTCGTCTCTGTTTGCATCAAACCGCTCTCTCC
ACACGCGATGTTAACATGGACCGATGCTGTGTTGCATTGTTTGTCTCTGT
TCAGCGTTCAACCACCCTCTTCTGTGTGTGTGCTACTGCTGCTGTATTCA
CCTTTCAACAAGTTCCGCTGTGCAATAAGCTTGCGTCTGTTCCAGTACGC
CTCCTGTTCAGCACTGCTGCTACTGGTCATTCGACGCATTTGGCGAAAAA
TTGGGTCAGGCGTAGGGTTATTGTCAGGGTGAAAGGCCTACCCCTTTGGT
AGCCATAAACAACCCCAACATGAGCAGGAGATACGCCAAGACCATCTCTT
TTTTCTTACACCAAGGTCTTCAGGGCGCCAAACCTATGGAATGGTGTGCA
GTATGCAGTTGGTACTGGTTGACGCACAACTCCTTTTTGGTTGTACTTAT
ACAGGAATGACAGTATTCATTTGAGGGGTATTCGATTCAAGGCGGCGAAA
AAACGAAAAAAAATCGGCGCTGTGGCCACAACCAATGCCACCGCCGAAAA
GCGCATTATCCTGTGCCGGGCACGCGTCACACCAGCGCGGGATGAATCGC
TGTTTTCTTTGCGTGCGCATCGTGGGGCTGGCGCCCCACCATGTATGCCG
GGTCGGGATTTGTAGGCATTGTGTCGGCAACCACATCCGCAGCGCGATGT
CCTCAGGTCACGATTGTGCGACCGCCTGTCTCGCGTGAAGGTCGTGAGTT
CGGCTACTACGCACATTGACATCTGCTAATTTACTTGTACAACGAGCGCT
GCGTGCGTGCTTTTTTTCTTTTCTCAACGTGAGTTTTTTTTTTCTCGGCG
CGTCGCAGCGCTTTCTTTCAGGAGCGAGACCCTACGCCGTTGATATACTC
TTTCCATATTTGCGGCTGTAGAACTGACGCAAGTATCGTCGACGACAACA
TCGACGAAAGCGGCTTTTTTTTCGTGTTTTCCTTTGCGTTCCATGAGAAA
CGGCTGTCAAAGGTACACCTCCTCCCGGTGAGAATAGGCCATTTATATCG
TTCCCGAGTTTCTCCAGCTACCACCCGTCCCTTTCACCCATCGCCCGGCC
CTGCCTCTCCCTTCTGTCCCAACAACAGAGACATGCACGAGCGGATCGCG
CGGCGGCAGGAGCAGAGCAAGGCCTTCATGGAGCAGCCCCTGGAGGAACA
GGCCAAGCAGACAATGAGAAGGCTCGGCGTGCGTCTTCCGGAGTCCCGCA
ATGACCTAGGAGGTCGCATCGACGACGACGACGACGACGATGACGACGAC
TTCCGGATGGGACCGGGCGGCGGGGGGGGNNNN

Coding sequence (CDS) from alignment at Scaffold_389:97380..104662+

>EsuBft135_15a-0001 ID=EsuBft135_15a-0001|Name=EsuBft135_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=576bp|location=Sequence derived from alignment at Scaffold_389:97380..104662+ (Ectocarpus subulatus male Bft15b)
ATGTCGGACGACGACGGGCTGCGCGACAGCGACTCTGAGGATGAACCCCA
AGGGCAAAACGTAGAGGAAGAGGAAGAGGAGGAAGAGGAGGAGGACGAGG
AGGACGAGGAGGAAGAGGACGAGGAGGAGGAGGAGGCCGAGCCTTCGTCC
GAGGAAGATTCTGATGATGGCGGTGGTCGGAGCAGGAGGGCAAGCAGCAG
CAGCAGGGGCAAGAAGCGGGCCAGGGAGGCTCCGCCGGCGGCCAAGAAGA
AGTCGCGGAGGGGGGACATGTCACGGTTTTACGATGAGATGGCGGAGGTA
GACGATGACGCCGAGGAGGACTACGACGACAAGGACCGCGCTAACGCGAA
CGAGCTCACCGCCATGGAGAGAGACATGCACGAGCGGATCGCGCGGCGGC
AGGAGCAGAGCAAGGCCTTCATGGAGCAGCCCCTGGAGGAACAGGCCAAG
CAGACAATGAGAAGGCTCGGCGTGCGTCTTCCGGAGTCCCGCAATGACCT
AGGAGGTCGCATCGACGACGACGACGACGACGATGACGACGACTTCCGGA
TGGGACCGGGCGGCGGGGGGGGNNNN