EsuBft135_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft135_13a-0001
Unique NameEsuBft135_13a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_389contigScaffold_389:122187..122868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FI29
ProteomeIdEsuBft135_13
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length13
Hectar predicted targeting categoryno signal peptide or anchor
Evalue1.93e-17
EggNOG OGsCOG5164@1|root,KOG1999@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K11292,ko:K15172
Descriptionregulation of DNA-templated transcription, elongation
COG categoryK
BRITEko00000,ko03019,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft135_13aEsuBft135_13aEctocarpus subulatus male Bft15bgeneScaffold_389 122187..122868 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft135_13a-0001-exonEsuBft135_13a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_389 122187..122312 +
EsuBft135_13a-0001-exonagat-exon-61157Ectocarpus subulatus male Bft15bexonScaffold_389 122863..122868 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft135_13a-0001-exonagat-five_prime_utr-2146Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_389 122187..122198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft135_13a-0001-cdsEsuBft135_13a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_389 122199..122312 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft135_13a-0001EsuBft135_13Ectocarpus subulatus male Bft15bpolypeptideScaffold_389 122199..122868 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft135_13a-0001 ID=EsuBft135_13a-0001|Name=EsuBft135_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=132bp|location=Sequence derived from alignment at Scaffold_389:122187..122868+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGCGACGCCGTGATGGTGATCGGGTCCCGCAACGACGGCAAGACGGGCAT
CCTGAAGAAGATCGACGGAAAGGACGGCATCGTCAGATACAAGGGCGGGG
CCGAGAGGGACGTCGTGCCAATGCAGGTTTGA
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protein sequence of EsuBft135_13a-0001

>EsuBft135_13 ID=EsuBft135_13|Name=EsuBft135_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=39bp
MVIGSRNDGKTGILKKIDGKDGIVRYKGGAERDVVPMQV
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mRNA from alignment at Scaffold_389:122187..122868+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft135_13a-0001 ID=EsuBft135_13a-0001|Name=EsuBft135_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=682bp|location=Sequence derived from alignment at Scaffold_389:122187..122868+ (Ectocarpus subulatus male Bft15b)
CGCGACGCCGTGATGGTGATCGGGTCCCGCAACGACGGCAAGACGGGCAT
CCTGAAGAAGATCGACGGAAAGGACGGCATCGTCAGATACAAGGGCGGGG
CCGAGAGGGACGTCGTGCCAATGCAGGTAGTGAATGCCAACCGATGTCGT
CGTCGTCGTCTTCGTCGTGGATGTCTGGATTGCTGCAATTGGCGGTGGTG
CTCTTGTGTGTTGCATGCCCTAGCGGTTAGACCATTGACCACGCGTCGTC
TAGAGGACGGAGCATTGTTCCCACAGGACCGATCACCGATGGCCAATCGT
TCCTTCTACGTTGCCAAATTGGTGGGGGTGGTGTTTAAGGCTCCTCTCGG
GAATTTTTTTCCCGCGGGAATTTCCACGGGAACGGTAGTTGGTAACGTTA
CCGTGATCATTTCCGGTTACGCGTACCCATCGAAAGCGTTGCCGAGCAAA
TGGCCTTCTCCCATTCCCATCCAAGTCGTTACCAAGGACATGAAATCCCG
TTGTTCCCACCCAACCAAGTACCGTGCAAAATGTCGAAATCCCGTGGCTT
TTGGTTACCACCCAAGCAATTCCCGGCAAGATGTAGAATTCCCGGTACCG
TACGGGAACAAAACATGTTTTACCGTACACGTAGCTGAGCGGATAGTCTG
CGCATTTGCAGCACTGTACGTGGCAGGTTTGA
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Coding sequence (CDS) from alignment at Scaffold_389:122187..122868+

>EsuBft135_13a-0001 ID=EsuBft135_13a-0001|Name=EsuBft135_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=120bp|location=Sequence derived from alignment at Scaffold_389:122187..122868+ (Ectocarpus subulatus male Bft15b)
ATGGTGATCGGGTCCCGCAACGACGGCAAGACGGGCATCCTGAAGAAGAT
CGACGGAAAGGACGGCATCGTCAGATACAAGGGCGGGGCCGAGAGGGACG
TCGTGCCAATGCAGGTTTGA
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