EsuBft1352_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1352_9a-0001
Unique NameEsuBft1352_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_70contigScaffold_70:212926..214044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1352_9
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-TM
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length93
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1352_9aEsuBft1352_9aEctocarpus subulatus male Bft15bgeneScaffold_70 212926..214044 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1352_9a-0001EsuBft1352_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_70 213082..213914 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1352_9a-0001-exonagat-exon-84062Ectocarpus subulatus male Bft15bexonScaffold_70 212926..212957 +
EsuBft1352_9a-0001-exonagat-exon-84061Ectocarpus subulatus male Bft15bexonScaffold_70 213052..213226 +
EsuBft1352_9a-0001-exonEsuBft1352_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_70 213322..214044 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1352_9a-0001-exonagat-five_prime_utr-2111Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_70 212926..212957 +
EsuBft1352_9a-0001-exonagat-five_prime_utr-2112Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_70 213052..213081 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1352_9a-0001-cdsEsuBft1352_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_70 213082..213226 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1352_9a-0001-exonagat-three_prime_utr-3208Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_70 213915..214044 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1352_9a-0001 ID=EsuBft1352_9a-0001|Name=EsuBft1352_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=930bp|location=Sequence derived from alignment at Scaffold_70:212926..214044+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AGCATCGTCCCTGGTCGCCGCGTTGGCGCCGGACGGTTGCAGCGGCGGCG
GTAGCGACATCGATGACGGGGGGTACGGCAGCGGCGACAGCAGCAGCGGC
GTCCCCGGTCGCCGCGTTGGCGTCGGGTGTCCAGACGGCCGCAACGGGGG
CGGCGGCGGCGGCACCGGTGACGGACGTATGTGACGAAGAGTTGGAGGAA
GCGGTTGCGAGGAGAGCGGCGGCAATGTTAGCGGCGATGAGGGGCTGGAT
GAAACCTGGAGTGGAGCCCCGACGCACCCTTTCGACCCCGGTAAGACATC
TTCGCGTGGCGCGAGGAGACGGGGGGCGGTACCAGGGGTTGCGTACCCCT
TCGATAGGGGCAGGAACGGGAGTGGCAGCTCCGGCGGCGGCAATGGCGGC
AGCCGCAGCAGCGACGAGAGTGGCGACTTCGGCCAGAGCTCCGGCGGCGA
CACCGGCGGCAGCAGGAGCAGCGAAGGAAGTGGTGACTTCGGCCATAGCT
CCGACGGCGACACCGGCGGCAGGGGCGGCTTCGGCCAGAACCTCGTCGGC
GGCAGCGGCGACAACGGCGGCGGTGGTAGAGGCGGTAGAAGCGACGTCAC
CGGCAGCCGTGTTGGCGCTGGAACTCATGACGGTCGTGGCGGCGGGGGAA
CGGCAACGGCGTTATGGCGGCGGCGGCAGCGGCGGTGGCGCCCTCGAGTC
GACCGGGAACGGGGAGGACACGGTGACAGCGACGACCTCACCTTGTTACA
GCCAAGTGGGAGAACATGTGAAACGTTTACGACTTTGTTCGGTTTTGTGA
GCAGGCATGTACGTTTTAGCTTCGCCATTTGGCCTCGCATTTATTTTTCT
GTTCTGTTTTTCCCTTGCCAGCGCACCGTGCACTTTGATGCAGAAAACAC
ACGTATGCAAAAGCGTGTGCGTACTGCTTT
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protein sequence of EsuBft1352_9a-0001

>EsuBft1352_9 ID=EsuBft1352_9|Name=EsuBft1352_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=245bp
MTGGTAAATAAAASPVAALASGVQTAATGAAAAAPVTDVCDEELEEAVAR
RAAAMLAAMRGWMKPGVEPRRTLSTPVRHLRVARGDGGRYQGLRTPSIGA
GTGVAAPAAAMAAAAAATRVATSARAPAATPAAAGAAKEVVTSAIAPTAT
PAAGAASARTSSAAAATTAAVVEAVEATSPAAVLALELMTVVAAGERQRR
YGGGGSGGGALESTGNGEDTVTATTSPCYSQVGEHVKRLRLCSVL
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mRNA from alignment at Scaffold_70:212926..214044+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1352_9a-0001 ID=EsuBft1352_9a-0001|Name=EsuBft1352_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1119bp|location=Sequence derived from alignment at Scaffold_70:212926..214044+ (Ectocarpus subulatus male Bft15b)
AGCATCGTCCCTGGTCGCCGCGTTGGCGCCGGGTACTCAGACGGATGCAG
CGGCGATGGCGGCGGCGTCAGTGACAGGGGGAACGGCAGCGGCAGCAGCA
GCTGCGGCGTGTCGTCGGGTATCCAGACGGTTGCAGCGGCGGCGGTAGCG
ACATCGATGACGGGGGGTACGGCAGCGGCGACAGCAGCAGCGGCGTCCCC
GGTCGCCGCGTTGGCGTCGGGTGTCCAGACGGCCGCAACGGGGGCGGCGG
CGGCGGCACCGGTGACGGACGTATGTGACGAAGAGTTGGAGGAAGCGGTT
GGTGCGACGACGACGCCGTTGCCAGTCCTGGAGGAGCTCGACAGCCAATG
GGCTGGACGTGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGAG
GAGAGCGGCGGCAATGTTAGCGGCGATGAGGGGCTGGATGAAACCTGGAG
TGGAGCCCCGACGCACCCTTTCGACCCCGGTAAGACATCTTCGCGTGGCG
CGAGGAGACGGGGGGCGGTACCAGGGGTTGCGTACCCCTTCGATAGGGGC
AGGAACGGGAGTGGCAGCTCCGGCGGCGGCAATGGCGGCAGCCGCAGCAG
CGACGAGAGTGGCGACTTCGGCCAGAGCTCCGGCGGCGACACCGGCGGCA
GCAGGAGCAGCGAAGGAAGTGGTGACTTCGGCCATAGCTCCGACGGCGAC
ACCGGCGGCAGGGGCGGCTTCGGCCAGAACCTCGTCGGCGGCAGCGGCGA
CAACGGCGGCGGTGGTAGAGGCGGTAGAAGCGACGTCACCGGCAGCCGTG
TTGGCGCTGGAACTCATGACGGTCGTGGCGGCGGGGGAACGGCAACGGCG
TTATGGCGGCGGCGGCAGCGGCGGTGGCGCCCTCGAGTCGACCGGGAACG
GGGAGGACACGGTGACAGCGACGACCTCACCTTGTTACAGCCAAGTGGGA
GAACATGTGAAACGTTTACGACTTTGTTCGGTTTTGTGAGCAGGCATGTA
CGTTTTAGCTTCGCCATTTGGCCTCGCATTTATTTTTCTGTTCTGTTTTT
CCCTTGCCAGCGCACCGTGCACTTTGATGCAGAAAACACACGTATGCAAA
AGCGTGTGCGTACTGCTTT
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Coding sequence (CDS) from alignment at Scaffold_70:212926..214044+

>EsuBft1352_9a-0001 ID=EsuBft1352_9a-0001|Name=EsuBft1352_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=738bp|location=Sequence derived from alignment at Scaffold_70:212926..214044+ (Ectocarpus subulatus male Bft15b)
ATGACGGGGGGTACGGCAGCGGCGACAGCAGCAGCGGCGTCCCCGGTCGC
CGCGTTGGCGTCGGGTGTCCAGACGGCCGCAACGGGGGCGGCGGCGGCGG
CACCGGTGACGGACGTATGTGACGAAGAGTTGGAGGAAGCGGTTGCGAGG
AGAGCGGCGGCAATGTTAGCGGCGATGAGGGGCTGGATGAAACCTGGAGT
GGAGCCCCGACGCACCCTTTCGACCCCGGTAAGACATCTTCGCGTGGCGC
GAGGAGACGGGGGGCGGTACCAGGGGTTGCGTACCCCTTCGATAGGGGCA
GGAACGGGAGTGGCAGCTCCGGCGGCGGCAATGGCGGCAGCCGCAGCAGC
GACGAGAGTGGCGACTTCGGCCAGAGCTCCGGCGGCGACACCGGCGGCAG
CAGGAGCAGCGAAGGAAGTGGTGACTTCGGCCATAGCTCCGACGGCGACA
CCGGCGGCAGGGGCGGCTTCGGCCAGAACCTCGTCGGCGGCAGCGGCGAC
AACGGCGGCGGTGGTAGAGGCGGTAGAAGCGACGTCACCGGCAGCCGTGT
TGGCGCTGGAACTCATGACGGTCGTGGCGGCGGGGGAACGGCAACGGCGT
TATGGCGGCGGCGGCAGCGGCGGTGGCGCCCTCGAGTCGACCGGGAACGG
GGAGGACACGGTGACAGCGACGACCTCACCTTGTTACAGCCAAGTGGGAG
AACATGTGAAACGTTTACGACTTTGTTCGGTTTTGTGA
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