Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft1352_8 |
| Protein domains | IPR001878 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Length | 339 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003676 |
| GO | 0008270 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1352_8a-0001 ID=EsuBft1352_8a-0001|Name=EsuBft1352_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3390bp|location=Sequence derived from alignment at Scaffold_70:195398..198787- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CGGCCAGTTCGTAGGGGCCACGGAACCCCAGCCGGACGTCGGGGACATGA
ACTAACCCAAAGCTACGTTGCTGGCAGAGGGGTACTCCGAGGCGCAGATC
CACCGCAGCCTCCAAGCTTTCCACTTTCTGTCCTCGGCCCTGGTGAGGGA
GCCAGACAAGGCCGTCTTCGGGAGATGTGTGACGCCGAAGCAGGCGTTGG
ATGAACTCGACAAGGTGCACAACCCGGAATCGCAGGTAGCCACACAGGAG
TTGCTCAGCAAGTTTCAGAACTTCGCAATGCCGGCCGACAAAAACCCGAC
TGAATCGCTTATCGCCATGGAGCAACTCGCAAGTCGTCTGAACGAGAGAG
GGGTCAGGGTCGAGGCTTCTTACGTGCTGTCGCTCTTCCTTTCGGCCCTA
CCGGCCGAGTACGACCATGCCAAACTGACTCTGCAGTCCGCACCGACTCT
GGACCGGGGCGAGGTCATGAGAGTGGTGGGCTCCCAGCACTCCAGCATCA
AGCAGGGGAAGAGCCATCGGAACAGCAACCGCAACAATCACAAGGCGTCT
GAGCAGGGATTACTCGTGAGCGCCGACAATGGCAGCGGCGGAAAAGCTGG
TCGCAACCGCGGCCGCGGGGGACGCGGCGGTGGCGGAAACGGCGAAAATG
GCGGCAGCGGCAACGGCAACGGCAACGGCGGTGGAGACGGCAGCAGCTAC
GGCGGCCGTCGTAGGGGCCGGTGCTACCGGTGCAAGAGGCGAGGGCACCA
GTCGTTCTCGTGCACTACCCCCATCGCCGACTTCATGACCCAGTGCGAGA
ACTGCGACGGGTATGGACACGATGAGAGCAAGTGCCCGTCGGCGAAGGAC
GAGGAGAAGGCGAAGGGCGAGACGGCGGTCATGGCGATTGCGGTGGCGAG
CGATGACGAGGAGCTGGATGTGGCAAGTGAGGCCTTGTAAGAAGAGGCGG
GGGAAAGACACAATATCCGCGCTGGTCACTACGCGCGCACCANNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNACTGAGGCAATACAGCTCCCTCTAG
CAAACCTAGGGTCGTGTAGTGCCCGTCCGCCTTTTTGACGGTGTCTGCCT
ACGCGCAAAAAAATGAGATGGGCATCACTGCCTACGCCGACGGCCAGAAA
GGCCCGCGCATCTACATTTTCCCGCCTGACCCCATCAGTG back to topprotein sequence of EsuBft1352_8a-0001 >EsuBft1352_8 ID=EsuBft1352_8|Name=EsuBft1352_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=220bp
MPADKNPTESLIAMEQLASRLNERGVRVEASYVLSLFLSALPAEYDHAKL
TLQSAPTLDRGEVMRVVGSQHSSIKQGKSHRNSNRNNHKASEQGLLVSAD
NGSGGKAGRNRGRGGRGGGGNGENGGSGNGNGNGGGDGSSYGGRRRGRCY
RCKRRGHQSFSCTTPIADFMTQCENCDGYGHDESKCPSAKDEEKAKGETA
VMAIAVASDDEELDVASEAL back to topmRNA from alignment at Scaffold_70:195398..198787- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1352_8a-0001 ID=EsuBft1352_8a-0001|Name=EsuBft1352_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3390bp|location=Sequence derived from alignment at Scaffold_70:195398..198787- (Ectocarpus subulatus male Bft15b)
CGGCCAGTTCGTAGGGGCCACGGAACCCCAGCCGGACGTCGGGGACATGA
ACTAACCCAAAGCTACGTTGCTGGCAGAGGGGTACTCCGAGGCGCAGATC
CACCGCAGCCTCCAAGCTTTCCACTTTCTGTCCTCGGCCCTGGTGAGGGA
GCCAGACAAGGCCGTCTTCGGGAGATGTGTGACGCCGAAGCAGGCGTTGG
ATGAACTCGACAAGGTGCACAACCCGGAATCGCAGGTAGCCACACAGGAG
TTGCTCAGCAAGTTTCAGAACTTCGCAATGCCGGCCGACAAAAACCCGAC
TGAATCGCTTATCGCCATGGAGCAACTCGCAAGTCGTCTGAACGAGAGAG
GGGTCAGGGTCGAGGCTTCTTACGTGCTGTCGCTCTTCCTTTCGGCCCTA
CCGGCCGAGTACGACCATGCCAAACTGACTCTGCAGTCCGCACCGACTCT
GGACCGGGGCGAGGTCATGAGAGTGGTGGGCTCCCAGCACTCCAGCATCA
AGCAGGGGAAGAGCCATCGGAACAGCAACCGCAACAATCACAAGGCGTCT
GAGCAGGGATTACTCGTGAGCGCCGACAATGGCAGCGGCGGAAAAGCTGG
TCGCAACCGCGGCCGCGGGGGACGCGGCGGTGGCGGAAACGGCGAAAATG
GCGGCAGCGGCAACGGCAACGGCAACGGCGGTGGAGACGGCAGCAGCTAC
GGCGGCCGTCGTAGGGGCCGGTGCTACCGGTGCAAGAGGCGAGGGCACCA
GTCGTTCTCGTGCACTACCCCCATCGCCGACTTCATGACCCAGTGCGAGA
ACTGCGACGGGTATGGACACGATGAGAGCAAGTGCCCGTCGGCGAAGGAC
GAGGAGAAGGCGAAGGGCGAGACGGCGGTCATGGCGATTGCGGTGGCGAG
CGATGACGAGGAGCTGGATGTGGCAAGTGAGGCCTTGTAAGAAGAGGCGG
GGGAAAGACACAATATCCGCGCTGGTCACTACGCGCGCACCANNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNACTGAGGCAATACAGCTCCCTCTAG
CAAACCTAGGGTCGTGTAGTGCCCGTCCGCCTTTTTGACGGTGTCTGCCT
ACGCGCAAAAAAATGAGATGGGCATCACTGCCTACGCCGACGGCCAGAAA
GGCCCGCGCATCTACATTTTCCCGCCTGACCCCATCAGTG back to topCoding sequence (CDS) from alignment at Scaffold_70:195398..198787- >EsuBft1352_8a-0001 ID=EsuBft1352_8a-0001|Name=EsuBft1352_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=663bp|location=Sequence derived from alignment at Scaffold_70:195398..198787- (Ectocarpus subulatus male Bft15b)
ATGCCGGCCGACAAAAACCCGACTGAATCGCTTATCGCCATGGAGCAACT
CGCAAGTCGTCTGAACGAGAGAGGGGTCAGGGTCGAGGCTTCTTACGTGC
TGTCGCTCTTCCTTTCGGCCCTACCGGCCGAGTACGACCATGCCAAACTG
ACTCTGCAGTCCGCACCGACTCTGGACCGGGGCGAGGTCATGAGAGTGGT
GGGCTCCCAGCACTCCAGCATCAAGCAGGGGAAGAGCCATCGGAACAGCA
ACCGCAACAATCACAAGGCGTCTGAGCAGGGATTACTCGTGAGCGCCGAC
AATGGCAGCGGCGGAAAAGCTGGTCGCAACCGCGGCCGCGGGGGACGCGG
CGGTGGCGGAAACGGCGAAAATGGCGGCAGCGGCAACGGCAACGGCAACG
GCGGTGGAGACGGCAGCAGCTACGGCGGCCGTCGTAGGGGCCGGTGCTAC
CGGTGCAAGAGGCGAGGGCACCAGTCGTTCTCGTGCACTACCCCCATCGC
CGACTTCATGACCCAGTGCGAGAACTGCGACGGGTATGGACACGATGAGA
GCAAGTGCCCGTCGGCGAAGGACGAGGAGAAGGCGAAGGGCGAGACGGCG
GTCATGGCGATTGCGGTGGCGAGCGATGACGAGGAGCTGGATGTGGCAAG
TGAGGCCTTGTAA back to top
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