EsuBft1352_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1352_7a-0001
Unique Name	EsuBft1352_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_70	contig	Scaffold_70:186192..191177 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	4530.OS11T0656500-01
ProteomeId	EsuBft1352_7
Protein domains	CYTOPLASMIC_DOMAIN
Protein domains	IPR001584
Protein domains	PTHR11439
Protein domains	IPR012337
Protein domains	TMhelix
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	TRANSMEMBRANE
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	5
Max annot lvl	35493\|Streptophyta
Length	4043
Evalue	1.24e-07
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,37THH@33090\|Viridiplantae,3GG2K@35493\|Streptophyta,3M2IR@4447\|Liliopsida,3IKX9@38820\|Poales
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Reverse transcriptase (RNA-dependent DNA polymerase)
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0003824
GO	0015074

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1352_7a	EsuBft1352_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_70 186192..191177 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1352_7a-0001	EsuBft1352_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_70 186192..188208 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1352_7a-0001-exon	agat-exon-84058	Ectocarpus subulatus male Bft15b	exon	Scaffold_70 186192..186484 +
EsuBft1352_7a-0001-exon	agat-exon-84060	Ectocarpus subulatus male Bft15b	exon	Scaffold_70 186724..186847 +
EsuBft1352_7a-0001-exon	agat-exon-84059	Ectocarpus subulatus male Bft15b	exon	Scaffold_70 187339..187590 +
EsuBft1352_7a-0001-exon	EsuBft1352_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_70 187647..188029 +
EsuBft1352_7a-0001-exon	agat-exon-84057	Ectocarpus subulatus male Bft15b	exon	Scaffold_70 188070..190764 +
EsuBft1352_7a-0001-exon	agat-exon-84056	Ectocarpus subulatus male Bft15b	exon	Scaffold_70 190882..191177 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1352_7a-0001-cds	EsuBft1352_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_70 186192..186484 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1352_7a-0001-exon	agat-three_prime_utr-3205	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_70 188209..190764 +
EsuBft1352_7a-0001-exon	agat-three_prime_utr-3206	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_70 190882..191177 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_70:186192..191177+
coding sequence from alignment at Scaffold_70:186192..191177+

spliced messenger RNA

>EsuBft1352_7a-0001 ID=EsuBft1352_7a-0001|Name=EsuBft1352_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4043bp|location=Sequence derived from alignment at Scaffold_70:186192..191177+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACGTGGCGTGTGCCCTCGAGGCAAGTCTGAGATTGATTTTGAGAA
AGATGGTGGTTTTTCGATGTCTGACGTGTTCACGAGTGCGGAGTCGTCGA
TGTGTCAACTCCTGGTGTTCCCCGCGTGCCTGCTGTGCATGAACGTTCTG
ATGATGAGTCCGGTGTCTCGAAGTTTGGTGTGTCTACTCATGATGTACCT
CGCGTGCCCGCTGTACTTGAGAGTCCTGATGAAGTGGTCGGCGTTTCGGA
GTGTGATGCATCTGTCCCTGCTGTACCAAGTGTGCCTGGAAAGGTTCCAC
CAAATCGGAGCCGACGGGAAACAGGAGGATTTGGACGTCACTGTGCCAGA
AGTCTTGTTTGTACCCGGGTGTGGTTTCAACCTTTTTTCGGTATGGAAGG
TGTCTCACAAGCATGAGGGGGGCGGGTACCGCGGCAAGAGGGCGCCGAAC
GACGTGTTCCACATCGACCTCTGCGGCGCGTACACGGCGACGATCGGTGG
TAACCACTACATGCTCTTCGGTGTGGACGCCGCCACGGGATGGATGGTCT
GCTACGCCATGCGGCGTAAGTCGGAGGCGCTGGCGGTCGTCAAGCGCATG
GTCGTGGATGCCGCCCACAAGGCTGGTACCGCGATCAAGTGCATCCGCTG
CGACTGNGCGGCATGCGGCGCTGGTACCGCGATCAAGTGCATCCGCTGCG
ACTGCGATGTCCTCTGGACCAGCAGCGACTTCAAGGAGTTCTGTGCCAGC
ATGGGGATCGCGCTCGAGTACTCCCCTCCCGGCGTGCAGCAGTACAACGG
CGTCGTCGAGAGCGCCATCCAGAGGTGCCTCAAGGTGGCCAAGGCATCCC
GCCGGGCCGCCCAGGAGCTGCTTGGCCCCGCAGGATTTTCTCGTGTTCGC
GGGCTGAGTGTTCGTGGCGATGAGGCCGCAAAAGACGCCGCGCAGAAGCT
GAACCAGTCAGCAACTCCTTCCAACCCCGGGGGTGCGTCGCCGGAGGAAC
TCTACACCGGTAAGGGAGGCCCTTTTCCCCTTGATCCCGTTCTTCCAGTA
CGGGCCGTGCCGTGTTTTTTCCTCAACGCCGGGGACAACCACGCCGACGT
CACCGTTAAGGTGCTCAAGGAGAGGACCGGCCACGTGTGCTACACCTCGA
ATGTAGCGTGGGCGGCGCTCCCGCCGTCGGGGGGGGGNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCAAGAATCCATCGGTTGCT
CATGAATTCGAAATCCCCAATATCAAATTATCATCATGATTGCAAAAACA
AATGCTCTTCTTCTACTCCGTACATCATCCTCAAAACAACACGAAGACCA
TTGAACCAACAAGACCACTTCAAAGTATTTCCTATCGGCCAGACTTCAAC
GCAACATTCAACGAACATCAAGAAGATTCAACCGAGCATTGAACCAACAA
GACCACTTCAAAGTTTTTCCCATAGATAGGTCATTCTTCAATATCAATGT
CCAAAAGAATATCACGAGAATCCAACCGACAATCGAACCAAAAACTCTGA
AGTACTTCCTATCGGCCGGTCTTGATTTCAATACTCAACGAACTTCACGA
AAATCCAACCGACCATAAAACCAAAAACACTGCTGCAGCAAGTATTTTAT
ATCGGTCAATCTTGAATCCGATGTCCAAAAGAATGCCATGAAGATACAAA
CCAATACAGAGGACCTCGACAATACCGAACGCCAAACCTGCCTCAGAAAC
GAAAGGTCCTCGAAACATGTGACATCGCTACACATGCTGCCTGCGTGGTT
GACAGCGTGACGCAAGTTGGAGTCGGGGATTGCCACAAGACAGCCGCCCC
CCCTCCTCTGGTACTAGTCCCCGCACGCATATAACCTCCGTTCGATTTCC
AATAGAACAACAATTTTCCTTCCTGCATACCCTACCAATACATGTCTGGT
TACGGCCCCCCTACTCCGAACACCAGACGTTAAGGGATGAACCCTCTACT
TGACAAATACATCCTGCGACAACAGAGCAGTAGTTCTCCTTCCTGCATAC
CCTACCAATGCAGTCTGGTTACGGCCCCCCTGCTCCGAACACCAGACACG
TTAAGGGATCAACCCTCTACTTGACAAACGCATCCTGTGACATTTGGGTA
CGGACAGCACACCAAAGAAAATATAATAATAACTTGTATTGTCATTCACG
GAATCAAATCCCGAACTTCGCAAATCGGACATGATAAAAAAAAAAAGCAA
AAGTTTGTTCGTGATGCTGTGGCAATTGTCATGACACAACCTTTTCTCCC
TCCCCATGATAATTGCCAACAGCATCGAAAAACAGAGAGAAGGGGTTCAT
CCCTGACCGATGGTACATGGAAAGGCGCGTCAAATACACAGGG

protein sequence of EsuBft1352_7a-0001

>EsuBft1352_7 ID=EsuBft1352_7|Name=EsuBft1352_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=397bp
MARGVCPRGKSEIDFEKDGGFSMSDVFTSAESSMCQLLVFPACLLCMNVL
MMSPVSRSLVCLLMMYLACPLYLRVLMKWSAFRSVMHLSLLYQVCLERFH
QIGADGKQEDLDVTVPEVLFVPGCGFNLFSVWKVSHKHEGGGYRGKRAPN
DVFHIDLCGAYTATIGGNHYMLFGVDAATGWMVCYAMRRKSEALAVVKRM
VVDAAHKAGTAIKCIRCDXAACGAGTAIKCIRCDCDVLWTSSDFKEFCAS
MGIALEYSPPGVQQYNGVVESAIQRCLKVAKASRRAAQELLGPAGFSRVR
GLSVRGDEAAKDAAQKLNQSATPSNPGGASPEELYTGKGGPFPLDPVLPV
RAVPCFFLNAGDNHADVTVKVLKERTGHVCYTSNVAWAALPPSGGGX

mRNA from alignment at Scaffold_70:186192..191177+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1352_7a-0001 ID=EsuBft1352_7a-0001|Name=EsuBft1352_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4986bp|location=Sequence derived from alignment at Scaffold_70:186192..191177+ (Ectocarpus subulatus male Bft15b)
ATGGCACGTGGCGTGTGCCCTCGAGGCAAGTCTGAGATTGATTTTGAGAA
AGATGGTGGTTTTTCGATGTCTGACGTGTTCACGAGTGCGGAGTCGTCGA
TGTGTCAACTCCTGGTGTTCCCCGCGTGCCTGCTGTGCATGAACGTTCTG
ATGATGAGTCCGGTGTCTCGAAGTTTGGTGTGTCTACTCATGATGTACCT
CGCGTGCCCGCTGTACTTGAGAGTCCTGATGAAGTGGTCGGCGTTTCGGA
GTGTGATGCATCTGTCCCTGCTGTACCAAGTGTGCCTGGAAAGGTAGTCG
TAGCCCGTCTCACCCGCCGTCCCACGGTTGAAAAAGCTTTCTTGTGCCAA
CCCTCCATGCCGAATCCGATTGGTAGTGAACAATGGCAGGCCGATTCTGG
AGCGAGTGCAATGATTTCGAACAAAGTGGATGCAATTTACAATGTACGCC
ACTTGGGCCCGGATGAACAATTTATTCAGATCGGAGACTCGGTTCTCATC
AAGGTTGCCGCTGTAGGGAGTTTGGACCTTAGGTTCCACCAAATCGGAGC
CGACGGGAAACAGGAGGATTTGGACGTCACTGTGCCAGAAGTCTTGTTTG
TACCCGGGTGTGGTTTCAACCTTTTTTCGGTATGGAAGGTGTCTCACAAG
CATGAGGTCCGTATCAACCCCAACGGTACGCAAATGATGCACGGAAAACT
GCGTTTTATTCGTGGCGTTTCGAGCGATTCCCTTTTTGCAACCCGCCTTC
CCCACAAATCCTTACCTTCTATGGACGTTGCGAATGAGAGTGCCAGTGAG
AGTTCTTTTTCCCTTGTGGCATCGGCTCTTACAGCCGCGATGGATTCCGA
TCTAGAACCCCCCCGTGTGACGGATGCTGTAGCGGAATACTCGGCGAAGA
TGATTGATGTGTGGGAGAGTGAAGAGTGTGAACGCGCCATGGCTGTGTTG
GGTCCGGGGAAGACACCTTTCAATGTCGGCGATGCACAAAATGTTAAGGA
TATTAAAACGTTCCACAACCGTTCCGGCCACTTGTCCGAACCCATTTTGA
GACTGCGAAGCAGCACGGGATAACCCTCACGGGCACGATGGACAGCTATC
GATGGTGCTTGCCGGCGCGTGGGACGAGGGCGACGGTGCCGAAGCAGGGG
GGCGGGTACCGCGGCAAGAGGGCGCCGAACGACGTGTTCCACATCGACCT
CTGCGGCGCGTACACGGCGACGATCGGTGGTAACCACTACATGCTCTTCG
GTGTGGACGCCGCCACGGGATGGATGGTCTGCTACGCCATGCGGCGTAAG
TCGGAGGCGCTGGCGGTCGTCAAGCGCATGGTCGTGGATGCCGCCCACAA
GGCTGGTACCGCGATCAAGTGCATCCGCTGCGACTGNGCGGCATGCGGCG
TAAGTCGGAGGCGCTAGCGGTCGTCAAGCGCATGGTCGTGGATGCCGCCC
ACAAGGCTGGTACCGCGATCAAGTGCATCCGCTGCGACTGCGATGTCCTC
TGGACCAGCAGCGACTTCAAGGAGTTCTGTGCCAGCATGGGGATCGCGCT
CGAGTACTCCCCTCCCGGCGTGCAGCAGTACAACGGCGTCGTCGAGAGCG
CCATCCAGAGGTGCCTCAAGGTGGCCAAGGCATCCCGCCGGGCCGCCCAG
GAGCTGCTTGGCCCCGCAGGATTTTCTCGTGTTCGCGGGCTGAGTGTTCG
TGGCGATGAGGCCGCAAAAGACGCCGCGCAGAAGCTGAACCAGTCAGCAA
CTCCTTCCAACCCCGGGGGTGCGTCGCCGGAGGAACTCTACACCGGTAAG
GGAGGCCCTTTTCCCCTTGATCCCGTTCTTCCAGTACGGTTTCATGTGGG
AGCGGCCGGCAACGAAAATGGACGACAGGGCCGTGCCGTGTTTTTTCCTC
AACGCCGGGGACAACCACGCCGACGTCACCGTTAAGGTGCTCAAGGAGAG
GACCGGCCACGTGTGCTACACCTCGAATGTAGCGTGGGCGGCGCTCCCGC
CGTCGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNCACCAAGAATCCATCGGTTGCTCATGAATTCGAAATCCCCAATATC
AAATTATCATCATGATTGCAAAAACAAATGCTCTTCTTCTACTCCGTACA
TCATCCTCAAAACAACACGAAGACCATTGAACCAACAAGACCACTTCAAA
GTATTTCCTATCGGCCAGACTTCAACGCAACATTCAACGAACATCAAGAA
GATTCAACCGAGCATTGAACCAACAAGACCACTTCAAAGTTTTTCCCATA
GATAGGTCATTCTTCAATATCAATGTCCAAAAGAATATCACGAGAATCCA
ACCGACAATCGAACCAAAAACTCTGAAGTACTTCCTATCGGCCGGTCTTG
ATTTCAATACTCAACGAACTTCACGAAAATCCAACCGACCATAAAACCAA
AAACACTGCTGCAGCAAGTATTTTATATCGGTCAATCTTGAATCCGATGT
CCAAAAGAATGCCATGAAGATACAAACCAATACAGAGGACCTCGACAATA
CCGAACGCCAAACCTGCCTCAGAAACGAAAGGTCCTCGAAACATGTGACA
TCGCTACACATGCTGCCTGCGTGGTTGACAGCGTGACGCAAGTTGGAGTC
GGGGATTGCCACAAGACAGCCGCCCCCCCTCCTCTGGTACTAGTCCCCGC
ACGCATATAACCTCCGTTCGATTTCCAATAGAACAACAATTTTCCTTCCT
GCATACCCTACCAATACATGTCTGGTTACGGCCCCCCTACTCCGAACACC
AGACGTTAAGGGATGAACCCTCTACTTGACAAATACATCCTGCGACAACA
GAGCAGTAGTTCTCCTTCCTGCATACCCTACCAATGCAGTCTGGTTACGG
CCCCCCTGCTCCGAACACCAGACGTTAAGGGATGAACCCTCTACTTGACA
AATACATCCTGCGACAACAGAGCAGTAGTTCTCCTTCCTGCATACCCTAC
CAATGCAGTCTGGTTACGGCCCCCCTGCTCCGAACACCAGACGTTAAGGG
ATCAACCCTCTACTTGACAAACGCATCCTGTGACATTTGGGTACGGACAG
CACACCAAAGAAAATATAATAATAACTTGTATTGTCATTCACGGAATCAA
ATCCCGAACTTCGCAAATCGGACATGATAAAAAAAAAAAGCAAAAGTTTG
TTCGTGATGCTGTGGCAATTGTCATGACACAACCTTTTCTCCCTCCCCAT
GATAATTGCCAACAGCATCGAAAAACAGAGAGAAGGGGTTCATCCCTGAC
CGATGGTACATGGAAAGGCGCGTCAAATACACAGGG

Coding sequence (CDS) from alignment at Scaffold_70:186192..191177+

>EsuBft1352_7a-0001 ID=EsuBft1352_7a-0001|Name=EsuBft1352_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1191bp|location=Sequence derived from alignment at Scaffold_70:186192..191177+ (Ectocarpus subulatus male Bft15b)
ATGGCACGTGGCGTGTGCCCTCGAGGCAAGTCTGAGATTGATTTTGAGAA
AGATGGTGGTTTTTCGATGTCTGACGTGTTCACGAGTGCGGAGTCGTCGA
TGTGTCAACTCCTGGTGTTCCCCGCGTGCCTGCTGTGCATGAACGTTCTG
ATGATGAGTCCGGTGTCTCGAAGTTTGGTGTGTCTACTCATGATGTACCT
CGCGTGCCCGCTGTACTTGAGAGTCCTGATGAAGTGGTCGGCGTTTCGGA
GTGTGATGCATCTGTCCCTGCTGTACCAAGTGTGCCTGGAAAGGTTCCAC
CAAATCGGAGCCGACGGGAAACAGGAGGATTTGGACGTCACTGTGCCAGA
AGTCTTGTTTGTACCCGGGTGTGGTTTCAACCTTTTTTCGGTATGGAAGG
TGTCTCACAAGCATGAGGGGGGCGGGTACCGCGGCAAGAGGGCGCCGAAC
GACGTGTTCCACATCGACCTCTGCGGCGCGTACACGGCGACGATCGGTGG
TAACCACTACATGCTCTTCGGTGTGGACGCCGCCACGGGATGGATGGTCT
GCTACGCCATGCGGCGTAAGTCGGAGGCGCTGGCGGTCGTCAAGCGCATG
GTCGTGGATGCCGCCCACAAGGCTGGTACCGCGATCAAGTGCATCCGCTG
CGACTGNGCGGCATGCGGCGCTGGTACCGCGATCAAGTGCATCCGCTGCG
ACTGCGATGTCCTCTGGACCAGCAGCGACTTCAAGGAGTTCTGTGCCAGC
ATGGGGATCGCGCTCGAGTACTCCCCTCCCGGCGTGCAGCAGTACAACGG
CGTCGTCGAGAGCGCCATCCAGAGGTGCCTCAAGGTGGCCAAGGCATCCC
GCCGGGCCGCCCAGGAGCTGCTTGGCCCCGCAGGATTTTCTCGTGTTCGC
GGGCTGAGTGTTCGTGGCGATGAGGCCGCAAAAGACGCCGCGCAGAAGCT
GAACCAGTCAGCAACTCCTTCCAACCCCGGGGGTGCGTCGCCGGAGGAAC
TCTACACCGGTAAGGGAGGCCCTTTTCCCCTTGATCCCGTTCTTCCAGTA
CGGGCCGTGCCGTGTTTTTTCCTCAACGCCGGGGACAACCACGCCGACGT
CACCGTTAAGGTGCTCAAGGAGAGGACCGGCCACGTGTGCTACACCTCGA
ATGTAGCGTGGGCGGCGCTCCCGCCGTCGGGGGGGGGNNNN