Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FXD3 |
| ProteomeId | EsuBft1352_5 |
| Protein domains | IPR004875 |
| Protein domains | PTHR19303 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | pogo transposable element with krab domain os:mus musculus gn:pogk pe:2 sv:2 [Automatic annotation] |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1107 |
| Hectar predicted targeting category | other localisation |
| Evalue | 4.85e-41 |
| EggNOG OGs | KOG3105@1|root,KOG3105@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | POGK |
| KEGG ko | ko:K09228 |
| Description | DNA binding |
| COG category | CH |
| BRITE | ko00000,ko03000 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003676 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1352_5a-0001 ID=EsuBft1352_5a-0001|Name=EsuBft1352_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1107bp|location=Sequence derived from alignment at Scaffold_70:178616..181384- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GCACACCCCTGTGCCAAGACCCCGATGTGTGCGATCCTAACATTGAAAAC
CACAGGGGATAGCAGCACTTCGCGTGTATGGTATTGCTGCAACACGATCA
CAACACAACCAAAAGACAAGCTGGTAGCTGCACACACAAACGAGTCTCGG
GGAATTGCCACCACAACAGTTCCGTGGCGGAGAAATACCGGCGGAAAATC
GGGAAAATGTCCGGGACGGAGCTGCGGGCTCGACCACACGCAACGCGCGG
CTACGATGTCGGAGGGTGCAAGCGCGGGACCTGCCGACGCCTCACAGGCC
TCACAGTCCTCACAGGCTAGTGCTGGCGGTCCTTCCTCTGCGGATCAGGG
AGCTGCCGCTGCAGACCCGAAGGCAACCGGCGAGGATATCGATGAGATGC
TAGCCGCCAACGACCCCGTCAAAAACAGCAACGGCAAACGCGTGTACCCG
GAGCCCAACTTCCCGATCGAGCGCTGGAGTGACCAGCGGGAGTGCAACGG
GTGGATCTCGGGCAGCTGGAAGCTCCGTCCCAACAACGGCAGCATCGTCC
AGCAGCGCCCGTGCATCCTGGTGCTGGACGACTTCAAGTGCCACAAGGAC
GAGGGTTTCATCGCCGCCCTCAAGAGAGACGCCAACACCATCGTCACCTT
CATCCCAGGCGGATTAACGCCCTTGCTCCAACCGCTCGACCGCATGCTCT
ACAGGCAGATGATGCGGCTGCTGCGGGGCAAGTGCACCGCCTACAGCGCG
TCGGCGGTCGCAGACGCCCGGTCGGGGAAGATGAAGCCACCGGAGCGTGG
GATCGTCTCGACGTGGTGCAAGGAAGCGTGGGAGTCCATCACCCCCGAGA
CGGTGAAGACTTGCTTCAAGATCAGCGCTCTCACGCTCGCGCTCGACGGC
AGCGAAGGCCACGCCTGGTGCGAGCACAACTTCGGGGAAGACTGCCGCGA
CCTTCTCGAGGAGCAGCACGCCGTGTGGCTCGCTGAGCACCTCGACGTGA
CTCTCCCGCCGCTCAAGCTGCTAAAGGAACCAGGGGGGTGGACTCCAACC
CCATGTTCGTATATGTCCTTTACTTGGAAGGGGAAGACGTTTTATCTCTT
GTATTAG back to topprotein sequence of EsuBft1352_5a-0001 >EsuBft1352_5 ID=EsuBft1352_5|Name=EsuBft1352_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=360bp
MCAILTLKTTGDSSTSRVWYCCNTITTQPKDKLVAAHTNESRGIATTTVP
WRRNTGGKSGKCPGRSCGLDHTQRAATMSEGASAGPADASQASQSSQASA
GGPSSADQGAAAADPKATGEDIDEMLAANDPVKNSNGKRVYPEPNFPIER
WSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALK
RDANTIVTFIPGGLTPLLQPLDRMLYRQMMRLLRGKCTAYSASAVADARS
GKMKPPERGIVSTWCKEAWESITPETVKTCFKISALTLALDGSEGHAWCE
HNFGEDCRDLLEEQHAVWLAEHLDVTLPPLKLLKEPGGWTPTPCSYMSFT
WKGKTFYLLY back to topmRNA from alignment at Scaffold_70:178616..181384- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1352_5a-0001 ID=EsuBft1352_5a-0001|Name=EsuBft1352_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2769bp|location=Sequence derived from alignment at Scaffold_70:178616..181384- (Ectocarpus subulatus male Bft15b)
GCACACCCCTGTGCCAAGACCCCGATGTGTGCGATCCTAACATTGAAAAC
CACAGGGGATAGCAGCACTTCGCGTGTATGGTATTGCTGCAACACGATCA
CAACACAACCAAAAGACAAGCTGGTAGCTGCACACACAAACGAGTCTCGG
GGAATTGCCACCACAACAGTTCCGTGGCGGAGAAATACCGGCGGAAAATC
GGGAAAATGTCCGGGACGGAGCTGCGGGCTCGACCACACGCAACGCGCGG
CTACGATGTCGGAGGGTGCAAGCGCGGGACCTGCCGACGCCTCACAGGCC
TCACAGTCCTCACAGGCTAGTGCTGGCGGTCCTTCCTCTGCGGATCAGGG
AGCTGCCGCTGCAGACCCGAAGGCAACCGGCGAGGATATCGATGAGATGC
TAGCCGCCAACGACCCCGTCAAAAACAGCAACGGCAAACGCGTGTACCCG
GAGCCCAACTTCCCGATCGAGCGGTCAGGAGCAGAAATATTCAACACTCT
ACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTGGAGTGACCAGCG
GGAGTGCAACGGGTGGATCTCGGGCAGCTGGAAGCTCCGTCCCAACAACG
GCAGCATCGTCCAGCAGCGCCCGTGCATCCTGGTGCTGGACGACTTCAAG
TGCCACAAGGACGAGGGTTTCATCGCCGCCCTCAAGAGAGACGCCAACAC
CATCGTCACCTTCATCCCAGGCGGATTAACGCCCTTGCTCCAACCGCTCG
ACCGCATGCTCTACAGGCAGATGATGCGGCTGCTGCGGGGCAAGTGCACC
GCCTACAGCGCGTCGGCGGTCGCAGACGCCCGGTCGGGGAAGATGAAGCC
ACCGGAGCGTGGGATCGTCTCGACGTGGTGCAAGGAAGCGTGGGAGTCCA
TCACCCCCGAGACGGTGAAGACTTGCTTCAAGATCAGCGCTCTCACGCTC
GCGCTCGACGGCAGCGAAGGCCACGCCTGGTGCGAGCACAACTTCGGGGA
AGACTGCCGCGACCTTCTCGAGGAGCAGCACGCCGTGTGGCTCGCTGAGC
ACCTCGACGTGACTCTCCCGCCGCTCAAGCTGCTAAAGGAACCAGGGGGG
TGGACTCCAACCCCATGTTCGTATATGTCCTTTACTTGGAAGGGGAAGAC
GTTTTATCTCTTGTATTAG back to topCoding sequence (CDS) from alignment at Scaffold_70:178616..181384- >EsuBft1352_5a-0001 ID=EsuBft1352_5a-0001|Name=EsuBft1352_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1083bp|location=Sequence derived from alignment at Scaffold_70:178616..181384- (Ectocarpus subulatus male Bft15b)
ATGTGTGCGATCCTAACATTGAAAACCACAGGGGATAGCAGCACTTCGCG
TGTATGGTATTGCTGCAACACGATCACAACACAACCAAAAGACAAGCTGG
TAGCTGCACACACAAACGAGTCTCGGGGAATTGCCACCACAACAGTTCCG
TGGCGGAGAAATACCGGCGGAAAATCGGGAAAATGTCCGGGACGGAGCTG
CGGGCTCGACCACACGCAACGCGCGGCTACGATGTCGGAGGGTGCAAGCG
CGGGACCTGCCGACGCCTCACAGGCCTCACAGTCCTCACAGGCTAGTGCT
GGCGGTCCTTCCTCTGCGGATCAGGGAGCTGCCGCTGCAGACCCGAAGGC
AACCGGCGAGGATATCGATGAGATGCTAGCCGCCAACGACCCCGTCAAAA
ACAGCAACGGCAAACGCGTGTACCCGGAGCCCAACTTCCCGATCGAGCGC
TGGAGTGACCAGCGGGAGTGCAACGGGTGGATCTCGGGCAGCTGGAAGCT
CCGTCCCAACAACGGCAGCATCGTCCAGCAGCGCCCGTGCATCCTGGTGC
TGGACGACTTCAAGTGCCACAAGGACGAGGGTTTCATCGCCGCCCTCAAG
AGAGACGCCAACACCATCGTCACCTTCATCCCAGGCGGATTAACGCCCTT
GCTCCAACCGCTCGACCGCATGCTCTACAGGCAGATGATGCGGCTGCTGC
GGGGCAAGTGCACCGCCTACAGCGCGTCGGCGGTCGCAGACGCCCGGTCG
GGGAAGATGAAGCCACCGGAGCGTGGGATCGTCTCGACGTGGTGCAAGGA
AGCGTGGGAGTCCATCACCCCCGAGACGGTGAAGACTTGCTTCAAGATCA
GCGCTCTCACGCTCGCGCTCGACGGCAGCGAAGGCCACGCCTGGTGCGAG
CACAACTTCGGGGAAGACTGCCGCGACCTTCTCGAGGAGCAGCACGCCGT
GTGGCTCGCTGAGCACCTCGACGTGACTCTCCCGCCGCTCAAGCTGCTAA
AGGAACCAGGGGGGTGGACTCCAACCCCATGTTCGTATATGTCCTTTACT
TGGAAGGGGAAGACGTTTTATCTCTTGTATTAG back to top
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